Published in Nucleic Acids Res on February 09, 2010
High-resolution mapping of protein sequence-function relationships. Nat Methods (2010) 3.47
The expanding scope of DNA sequencing. Nat Biotechnol (2012) 2.57
By-passing in vitro screening--next generation sequencing technologies applied to antibody display and in silico candidate selection. Nucleic Acids Res (2010) 1.87
Deep mutational scanning: assessing protein function on a massive scale. Trends Biotechnol (2011) 1.74
Enrich: software for analysis of protein function by enrichment and depletion of variants. Bioinformatics (2011) 1.47
Using phage and yeast display to select hundreds of monoclonal antibodies: application to antigen 85, a tuberculosis biomarker. PLoS One (2012) 1.13
FASTAptamer: A Bioinformatic Toolkit for High-throughput Sequence Analysis of Combinatorial Selections. Mol Ther Nucleic Acids (2015) 1.11
Deep Panning: steps towards probing the IgOme. PLoS One (2012) 1.08
The antibody mining toolbox: an open source tool for the rapid analysis of antibody repertoires. MAbs (2014) 1.02
The redox state of transglutaminase 2 controls arterial remodeling. PLoS One (2011) 0.97
Identification of Hnrph3 as an autoantigen for acute anterior uveitis. Clin Immunol (2010) 0.91
Filtering "genic" open reading frames from genomic DNA samples for advanced annotation. BMC Genomics (2011) 0.88
ORF phage display to identify cellular proteins with different functions. Methods (2012) 0.86
Deep mutational scanning of an antibody against epidermal growth factor receptor using mammalian cell display and massively parallel pyrosequencing. MAbs (2013) 0.85
From deep sequencing to actual clones. Protein Eng Des Sel (2014) 0.83
Interaction analysis through proteomic phage display. Biomed Res Int (2014) 0.82
High-throughput methods for identification of protein-protein interactions involving short linear motifs. Cell Commun Signal (2015) 0.81
High-throughput sequencing enhanced phage display enables the identification of patient-specific epitope motifs in serum. Sci Rep (2015) 0.81
A novel helper phage enabling construction of genome-scale ORF-enriched phage display libraries. PLoS One (2013) 0.81
Identification of calpain substrates by ORF phage display. Molecules (2011) 0.78
Exploring the Secretomes of Microbes and Microbial Communities Using Filamentous Phage Display. Front Microbiol (2016) 0.76
An Air-Well sparging minifermenter system for high-throughput protein production. Microb Cell Fact (2014) 0.76
Identification of novel proteins binding the AU-rich element of α-prothymosin mRNA through the selection of open reading frames (RIDome). RNA Biol (2015) 0.75
Mining gut microbiome oligopeptides by functional metaproteome display. Sci Rep (2016) 0.75
Screening the Molecular Framework Underlying Local Dendritic mRNA Translation. Front Mol Neurosci (2017) 0.75
Genome sequencing in microfabricated high-density picolitre reactors. Nature (2005) 150.21
Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods (2008) 126.81
Towards a proteome-scale map of the human protein-protein interaction network. Nature (2005) 24.76
Rapid protein-folding assay using green fluorescent protein. Nat Biotechnol (1999) 6.98
By-passing immunization. Human antibodies from V-gene libraries displayed on phage. J Mol Biol (1991) 6.62
Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Genome Res (2000) 3.78
Transglutaminases: nature's biological glues. Biochem J (2002) 3.42
Tissue transglutaminase is an integrin-binding adhesion coreceptor for fibronectin. J Cell Biol (2000) 2.86
Transglutaminase 2: an enigmatic enzyme with diverse functions. Trends Biochem Sci (2002) 2.74
Protein solubility and folding monitored in vivo by structural complementation of a genetic marker protein. Nat Biotechnol (2001) 2.60
Transglutaminase 2 undergoes a large conformational change upon activation. PLoS Biol (2007) 2.53
Molecular dissection of the tissue transglutaminase autoantibody response in celiac disease. J Immunol (2001) 1.65
A simple in vivo assay for increased protein solubility. Protein Sci (1999) 1.50
Screening for the preferred substrate sequence of transglutaminase using a phage-displayed peptide library: identification of peptide substrates for TGASE 2 and Factor XIIIA. J Biol Chem (2006) 1.37
Mammalian transglutaminases. Identification of substrates as a key to physiological function and physiopathological relevance. FEBS J (2005) 1.33
A novel function of tissue-type transglutaminase: protein disulphide isomerase. Biochem J (2003) 1.31
Tissue transglutaminase has intrinsic kinase activity: identification of transglutaminase 2 as an insulin-like growth factor-binding protein-3 kinase. J Biol Chem (2004) 1.27
Genetic screens and directed evolution for protein solubility. Curr Opin Chem Biol (2003) 1.26
Reduced expression of tissue transglutaminase in a human endothelial cell line leads to changes in cell spreading, cell adhesion and reduced polymerisation of fibronectin. J Cell Sci (1997) 1.26
Ligand-induced conformational changes in tissue transglutaminase: Monte Carlo analysis of small-angle scattering data. Biophys J (2000) 1.23
Efficient identification of tubby-binding proteins by an improved system of T7 phage display. J Mol Recognit (2009) 1.23
Phage display of cDNA libraries: enrichment of cDNA expression using open reading frame selection. Biotechniques (2004) 1.12
Rapid and efficient cDNA library screening by self-ligation of inverse PCR products (SLIP). Nucleic Acids Res (2005) 1.11
Transdab wiki: the interactive transglutaminase substrate database on web 2.0 surface. Amino Acids (2008) 1.10
The role of the matricellular protein SPARC in the dynamic interaction between the tumor and the host. Cancer Metastasis Rev (2008) 1.10
Selecting open reading frames from DNA. Genome Res (2003) 1.10
The role of transglutaminase-2 and its substrates in human diseases. Front Biosci (2006) 1.05
Efficient identification of phosphatidylserine-binding proteins by ORF phage display. Biochem Biophys Res Commun (2009) 1.03
Enrichment of open reading frames presented on bacteriophage M13 using hyperphage. Biotechniques (2006) 1.00
Antibodies in haystacks: how selection strategy influences the outcome of selection from molecular diversity libraries. J Immunol Methods (2001) 0.99
Characterizing monoclonal antibody epitopes by filtered gene fragment phage display. Biochem J (2005) 0.97
Identification of 'tissue' transglutaminase binding proteins in neural cells committed to apoptosis. FASEB J (1999) 0.95
Ca(2+)/Calmodulin-binding proteins from the C. elegans proteome. Cell Calcium (2007) 0.94
Interactive proteomics: what lies ahead? Biotechniques (2008) 0.92
Biotin-tagged cDNA expression libraries displayed on lambda phage: a new tool for the selection of natural protein ligands. Nucleic Acids Res (2002) 0.91
Comparison of mRNA-display-based selections using synthetic peptide and natural protein libraries. Biochemistry (2007) 0.90
Phage display selection of efficient glutamine-donor substrate peptides for transglutaminase 2. Protein Sci (2006) 0.83
Antibody library selection by the {beta}-lactamase protein fragment complementation assay. Protein Eng Des Sel (2008) 0.82
Detection of protein-protein interactions by ribosome display and protein in situ immobilisation. N Biotechnol (2009) 0.78
Endothelial progenitor cell derived microvesicles activate an angiogenic program in endothelial cells by a horizontal transfer of mRNA. Blood (2007) 4.73
Exosomes/microvesicles as a mechanism of cell-to-cell communication. Kidney Int (2010) 4.13
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002. Nucleic Acids Res (2002) 3.57
Whole-genome pyrosequencing of an epidemic multidrug-resistant Acinetobacter baumannii strain belonging to the European clone II group. Antimicrob Agents Chemother (2008) 3.24
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat. Nature (2012) 3.08
Development of a universal microarray based on the ligation detection reaction and 16S rrna gene polymorphism to target diversity of cyanobacteria. Appl Environ Microbiol (2004) 3.05
UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res (2005) 2.80
Diversity of bifidobacteria within the infant gut microbiota. PLoS One (2012) 2.71
uAUG and uORFs in human and rodent 5'untranslated mRNAs. Gene (2005) 2.54
Unraveling the complexity of tyrosine kinase inhibitor-resistant populations by ultra-deep sequencing of the BCR-ABL kinase domain. Blood (2013) 2.53
Microvesicles derived from endothelial progenitor cells protect the kidney from ischemia-reperfusion injury by microRNA-dependent reprogramming of resident renal cells. Kidney Int (2012) 2.47
A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. BMC Genomics (2009) 2.27
Microvesicles derived from mesenchymal stem cells enhance survival in a lethal model of acute kidney injury. PLoS One (2012) 2.23
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res (2009) 2.11
EXCAVATOR: detecting copy number variants from whole-exome sequencing data. Genome Biol (2013) 1.90
Discrimination of non-protein-coding transcripts from protein-coding mRNA. RNA Biol (2006) 1.82
Interactions between RPS19, mutated in Diamond-Blackfan anemia, and the PIM-1 oncoprotein. Haematologica (2005) 1.79
High-definition mapping of retroviral integration sites identifies active regulatory elements in human multipotent hematopoietic progenitors. Blood (2010) 1.75
Mycobacterium tuberculosis functional network analysis by global subcellular protein profiling. Mol Biol Cell (2004) 1.73
Unexpected expression of alpha- and beta-globin in mesencephalic dopaminergic neurons and glial cells. Proc Natl Acad Sci U S A (2009) 1.64
Treatment of experimental arthritis by targeting synovial endothelium with a neutralizing recombinant antibody to C5. Arthritis Rheum (2012) 1.61
Complete mitochondrial genome sequence of the Tyrolean Iceman. Curr Biol (2008) 1.55
Modulation of microRNA expression in human T-cell development: targeting of NOTCH3 by miR-150. Blood (2011) 1.47
Thrombus formation induced by antibodies to beta2-glycoprotein I is complement dependent and requires a priming factor. Blood (2005) 1.44
Retracted Fluorobodies combine GFP fluorescence with the binding characteristics of antibodies. Nat Biotechnol (2003) 1.41
Effect of the intracellular localization of a Gd-based imaging probe on the relaxation enhancement of water protons. Magn Reson Med (2006) 1.38
Unbalance of intestinal microbiota in atopic children. BMC Microbiol (2012) 1.37
Acquired copy-neutral loss of heterozygosity of chromosome 1p as a molecular event associated with marrow fibrosis in MPL-mutated myeloproliferative neoplasms. Blood (2013) 1.30
Methods for detection of GMOs in food and feed. Anal Bioanal Chem (2008) 1.27
Deep sequencing reveals double mutations in cis of MPL exon 10 in myeloproliferative neoplasms. Haematologica (2011) 1.25
Missense mutations associated with Diamond-Blackfan anemia affect the assembly of ribosomal protein S19 into the ribosome. Hum Mol Genet (2007) 1.24
"Remake" by high-throughput sequencing of the microbiota involved in the production of water buffalo mozzarella cheese. Appl Environ Microbiol (2012) 1.23
Obestatin promotes survival of pancreatic beta-cells and human islets and induces expression of genes involved in the regulation of beta-cell mass and function. Diabetes (2007) 1.22
Circulating plasma factors induce tubular and glomerular alterations in septic burns patients. Crit Care (2008) 1.22
In vivo targeting of human neutralizing antibodies against CD55 and CD59 to lymphoma cells increases the antitumor activity of rituximab. Cancer Res (2007) 1.21
Modification of the erythroid transcription factor GATA-1 by SUMO-1. Proc Natl Acad Sci U S A (2004) 1.21
Isolation and characterization of resident mesenchymal stem cells in human glomeruli. Stem Cells Dev (2009) 1.20
Macrophage stimulating protein may promote tubular regeneration after acute injury. J Am Soc Nephrol (2008) 1.19
High-throughput sequencing allows the identification of binding molecules isolated from DNA-encoded chemical libraries. Proc Natl Acad Sci U S A (2008) 1.18
High levels of osteopontin associated with polymorphisms in its gene are a risk factor for development of autoimmunity/lymphoproliferation. Blood (2003) 1.16
Improved route for the visualization of stem cells labeled with a Gd-/Eu-chelate as dual (MRI and fluorescence) agent. Magn Reson Med (2004) 1.15
Looking for celiac disease: diagnostic accuracy of two rapid commercial assays. Am J Gastroenterol (2006) 1.14
Microvesicles derived from endothelial progenitor cells enhance neoangiogenesis of human pancreatic islets. Cell Transplant (2012) 1.14
Strategies for comparing gene expression profiles from different microarray platforms: application to a case-control experiment. Anal Biochem (2006) 1.14
A case of recurrent proliferative glomerulonephritis with monoclonal IgG deposits after kidney transplant treated with plasmapheresis. Case Rep Nephrol Urol (2012) 1.14
Using phage and yeast display to select hundreds of monoclonal antibodies: application to antigen 85, a tuberculosis biomarker. PLoS One (2012) 1.13
A community standard format for the representation of protein affinity reagents. Mol Cell Proteomics (2009) 1.11
Selecting open reading frames from DNA. Genome Res (2003) 1.10
Phenotypes and gene expression profiles of Saccharopolyspora erythraea rifampicin-resistant (rif) mutants affected in erythromycin production. Microb Cell Fact (2009) 1.09
Humoral immune response to tissue transglutaminase is related to epithelial cell proliferation in celiac disease. Gastroenterology (2007) 1.08
Cryptic genetic gluten intolerance revealed by intestinal antitransglutaminase antibodies and response to gluten-free diet. Gut (2011) 1.07
The genomics of Acinetobacter baumannii: insights into genome plasticity, antimicrobial resistance and pathogenicity. IUBMB Life (2011) 1.07
CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison. Nucleic Acids Res (2004) 1.07
In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements. Nucleic Acids Res (2011) 1.07
Specific inactivation of two immunomodulatory SIGLEC genes during human evolution. Proc Natl Acad Sci U S A (2012) 1.06
Bacterial discrimination by means of a universal array approach mediated by LDR (ligase detection reaction). BMC Microbiol (2002) 1.06
Controlling complement resistance in cancer by using human monoclonal antibodies that neutralize complement-regulatory proteins CD55 and CD59. Eur J Immunol (2005) 1.04
The analysis of the fine specificity of celiac disease antibodies using tissue transglutaminase fragments. Eur J Biochem (2002) 1.03
Complete genome sequence of a serotype 11A, ST62 Streptococcus pneumoniae invasive isolate. BMC Microbiol (2011) 1.03
Anti transglutaminase antibodies cause ataxia in mice. PLoS One (2010) 1.02
The complete mitochondrial genome of an 11,450-year-old aurochsen (Bos primigenius) from Central Italy. BMC Evol Biol (2011) 1.02
Evaluation of human gene variant detection in amplicon pools by the GS-FLX parallel Pyrosequencer. BMC Genomics (2008) 1.02
A single conformational transglutaminase 2 epitope contributed by three domains is critical for celiac antibody binding and effects. Proc Natl Acad Sci U S A (2011) 1.02
Avoiding and controlling double transformation artifacts. Protein Eng Des Sel (2007) 1.01
Polymorphism analysis within the HLA-A locus by universal oligonucleotide array. Hum Mutat (2004) 1.01
High taxonomic level fingerprint of the human intestinal microbiota by ligase detection reaction--universal array approach. BMC Microbiol (2010) 1.01
Celiac disease in patients with sporadic and inherited cardiomyopathies and in their relatives. Eur Heart J (2003) 1.01
Using phage display to select antibodies recognizing post-translational modifications independently of sequence context. Mol Cell Proteomics (2006) 1.00
Plasmid incompatibility: more compatible than previously thought? Protein Eng Des Sel (2007) 1.00
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. Nucleic Acids Res (2010) 0.99
Analysis of the ribosomal protein S19 interactome. Mol Cell Proteomics (2006) 0.98
Data handling strategies for high throughput pyrosequencers. BMC Bioinformatics (2007) 0.98
Directed evolution of an extremely stable fluorescent protein. Protein Eng Des Sel (2009) 0.98
Characterizing monoclonal antibody epitopes by filtered gene fragment phage display. Biochem J (2005) 0.97
Selective therapeutic control of C5a and the terminal complement complex by anti-C5 single-chain Fv in an experimental model of antigen-induced arthritis in rats. Arthritis Rheum (2007) 0.97