PubRank

Shin-Han Shiu

Author PubWeight™ 61.49‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 2007 8.12
2 The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis. Proc Natl Acad Sci U S A 2002 3.82
3 A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection. Genome Res 2007 2.72
4 Changes in transcript abundance in Chlamydomonas reinhardtii following nitrogen deprivation predict diversion of metabolism. Plant Physiol 2010 2.44
5 Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli. Plant Physiol 2008 2.14
6 Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays. PLoS Genet 2008 1.99
7 Evolutionary history and stress regulation of plant receptor-like kinase/pelle genes. Plant Physiol 2009 1.94
8 Two-component systems and their co-option for eukaryotic signal transduction. Curr Biol 2011 1.74
9 A large complement of the predicted Arabidopsis ARM repeat proteins are members of the U-box E3 ubiquitin ligase family. Plant Physiol 2003 1.60
10 Identification of important regions for ethylene binding and signaling in the transmembrane domain of the ETR1 ethylene receptor of Arabidopsis. Plant Cell 2006 1.50
11 MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations. Plant Physiol 2013 1.48
12 Patterns of expansion and expression divergence in the plant polygalacturonase gene family. Genome Biol 2006 1.36
13 Large-scale, lineage-specific expansion of a bric-a-brac/tramtrack/broad complex ubiquitin-ligase gene family in rice. Plant Cell 2007 1.36
14 Two-component signaling elements and histidyl-aspartyl phosphorelays. Arabidopsis Book 2008 1.32
15 Genomic transition to pathogenicity in chytrid fungi. PLoS Pathog 2011 1.31
16 Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana. BMC Evol Biol 2010 1.28
17 Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution. Plant J 2012 1.27
18 The functional role of pack-MULEs in rice inferred from purifying selection and expression profile. Plant Cell 2009 1.27
19 Molecular identification and characterization of the tomato flagellin receptor LeFLS2, an orthologue of Arabidopsis FLS2 exhibiting characteristically different perception specificities. Plant Mol Biol 2007 1.26
20 Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779. PLoS Genet 2012 1.25
21 Gene expression shifts during perithecium development in Gibberella zeae (anamorph Fusarium graminearum), with particular emphasis on ion transport proteins. Fungal Genet Biol 2007 1.25
22 Characterization of genes involved in cytokinin signaling and metabolism from rice. Plant Physiol 2012 1.23
23 Cis-regulatory code of stress-responsive transcription in Arabidopsis thaliana. Proc Natl Acad Sci U S A 2011 1.21
24 Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift. PLoS One 2011 1.19
25 Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice. Plant Physiol 2009 1.18
26 A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana. J Exp Bot 2011 1.12
27 Evolution of stress-regulated gene expression in duplicate genes of Arabidopsis thaliana. PLoS Genet 2009 1.09
28 Diversity, classification and function of the plant protein kinase superfamily. Philos Trans R Soc Lond B Biol Sci 2012 1.08
29 The nonsynonymous/synonymous substitution rate ratio versus the radical/conservative replacement rate ratio in the evolution of mammalian genes. Mol Biol Evol 2007 1.07
30 Nomenclature for two-component signaling elements of rice. Plant Physiol 2007 1.03
31 sORF finder: a program package to identify small open reading frames with high coding potential. Bioinformatics 2009 1.00
32 Evolutionary relationships and functional diversity of plant sulfate transporters. Front Plant Sci 2012 1.00
33 Multifunctional arm repeat domains in plants. Int Rev Cytol 2006 1.00
34 The causes and molecular consequences of polyploidy in flowering plants. Ann N Y Acad Sci 2014 1.00
35 A comprehensive expression analysis of the Arabidopsis proline-rich extensin-like receptor kinase gene family using bioinformatic and experimental approaches. Plant Cell Physiol 2004 0.99
36 Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 35. Phytochemistry 2007 0.97
37 Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination. Proc Natl Acad Sci U S A 2013 0.95
38 Characteristics and significance of intergenic polyadenylated RNA transcription in Arabidopsis. Plant Physiol 2012 0.88
39 Alternative splicing of a multi-drug transporter from Pseudoperonospora cubensis generates an RXLR effector protein that elicits a rapid cell death. PLoS One 2012 0.87
40 CLUMPED CHLOROPLASTS 1 is required for plastid separation in Arabidopsis. Proc Natl Acad Sci U S A 2011 0.84
41 Epigenomic programming contributes to the genomic drift evolution of the F-Box protein superfamily in Arabidopsis. Proc Natl Acad Sci U S A 2013 0.78
42 Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779. PLoS Genet 2017 0.76