Published in Comput Stat Data Anal on March 15, 2009
Comparative study on ChIP-seq data: normalization and binding pattern characterization. Bioinformatics (2009) 2.02
Early Pregnancy Maternal Blood DNA Methylation in Repeat Pregnancies and Change in Gestational Diabetes Mellitus Status—A Pilot Study. Reprod Sci (2015) 1.12
A mixture modeling framework for differential analysis of high-throughput data. Comput Math Methods Med (2014) 0.79
BOG: R-package for Bacterium and virus analysis of Orthologous Groups. Comput Struct Biotechnol J (2015) 0.76
Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A (2001) 132.88
Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proc Natl Acad Sci U S A (1996) 24.18
CpG island methylator phenotype in colorectal cancer. Proc Natl Acad Sci U S A (1999) 13.02
Detecting differential gene expression with a semiparametric hierarchical mixture method. Biostatistics (2004) 6.51
Aging and DNA methylation in colorectal mucosa and cancer. Cancer Res (1998) 4.39
Cancer epigenetics. Hum Mol Genet (2005) 3.63
Cellular gene expression upon human immunodeficiency virus type 1 infection of CD4(+)-T-cell lines. J Virol (2003) 2.46
Abnormal CpG island methylation occurs during in vitro differentiation of human embryonic stem cells. Hum Mol Genet (2006) 2.27
A simple implementation of a normal mixture approach to differential gene expression in multiclass microarrays. Bioinformatics (2006) 2.15
Normal uniform mixture differential gene expression detection for cDNA microarrays. BMC Bioinformatics (2005) 1.79
A mixture model approach to detecting differentially expressed genes with microarray data. Funct Integr Genomics (2003) 1.71
Applications of CpG island microarrays for high-throughput analysis of DNA methylation. J Nutr (2002) 1.46
Gamma-Normal-Gamma mixture model for detecting differentially methylated loci in three breast cancer cell lines. Cancer Inform (2007) 1.12
Microarray-based survey of CpG islands identifies concurrent hyper- and hypomethylation patterns in tissues derived from patients with breast cancer. Genes Chromosomes Cancer (2006) 1.05
A Laplace mixture model for identification of differential expression in microarray experiments. Biostatistics (2006) 0.96
MicroRNAs modulate the chemosensitivity of tumor cells. Mol Cancer Ther (2008) 3.06
MicroRNA expression profiles for the NCI-60 cancer cell panel. Mol Cancer Ther (2007) 2.53
Identification of novel pRb binding sites using CpG microarrays suggests that E2F recruits pRb to specific genomic sites during S phase. Oncogene (2003) 2.22
Comparative study on ChIP-seq data: normalization and binding pattern characterization. Bioinformatics (2009) 2.02
Linkage analysis with sequential imputation. Genet Epidemiol (2003) 1.92
Epigenetic resensitization to platinum in ovarian cancer. Cancer Res (2012) 1.88
Fibroblasts isolated from common sites of breast cancer metastasis enhance cancer cell growth rates and invasiveness in an interleukin-6-dependent manner. Cancer Res (2008) 1.78
Generalized linear modeling with regularization for detecting common disease rare haplotype association. Genet Epidemiol (2009) 1.75
CD24 is a genetic modifier for risk and progression of multiple sclerosis. Proc Natl Acad Sci U S A (2003) 1.51
Monte Carlo pedigree disequilibrium test for markers on the X chromosome. Am J Hum Genet (2006) 1.50
Canonical and atypical E2Fs regulate the mammalian endocycle. Nat Cell Biol (2012) 1.37
Multilocus LD measure and tagging SNP selection with generalized mutual information. Genet Epidemiol (2005) 1.33
Breast cancer-associated fibroblasts confer AKT1-mediated epigenetic silencing of Cystatin M in epithelial cells. Cancer Res (2008) 1.30
Logistic Bayesian LASSO for identifying association with rare haplotypes and application to age-related macular degeneration. Biometrics (2011) 1.28
Microarray analysis of gene expression: considerations in data mining and statistical treatment. Physiol Genomics (2006) 1.26
A dinucleotide deletion in CD24 confers protection against autoimmune diseases. PLoS Genet (2007) 1.25
Differential methylation hybridization: profiling DNA methylation with a high-density CpG island microarray. Methods Mol Biol (2009) 1.15
Gamma-Normal-Gamma mixture model for detecting differentially methylated loci in three breast cancer cell lines. Cancer Inform (2007) 1.12
Photoperiod reverses the effects of estrogens on male aggression via genomic and nongenomic pathways. Proc Natl Acad Sci U S A (2007) 1.11
DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models. Bioinformatics (2011) 1.10
HOXB13, a target of DNMT3B, is methylated at an upstream CpG island, and functions as a tumor suppressor in primary colorectal tumors. PLoS One (2010) 1.08
Detection of parent-of-origin effects based on complete and incomplete nuclear families with multiple affected children. Hum Hered (2008) 1.07
Growth inhibition of ovarian tumor-initiating cells by niclosamide. Mol Cancer Ther (2012) 1.06
Clinical presentations of naturally occurring canine seizures: similarities to human seizures. Epilepsy Behav (2002) 1.04
Cyclosporin and plasma exchange in thrombotic thrombocytopenic purpura: long-term follow-up with serial analysis of ADAMTS13 activity. Br J Haematol (2007) 1.00
Probe signal correction for differential methylation hybridization experiments. BMC Bioinformatics (2008) 0.99
Relationship between ADAMTS13 activity in clinical remission and the risk of TTP relapse. Br J Haematol (2008) 0.99
Microsatellites versus Single-Nucleotide Polymorphisms in confidence interval estimation of disease loci. Genet Epidemiol (2006) 0.99
Detecting rare haplotype-environment interaction with logistic Bayesian LASSO. Genet Epidemiol (2013) 0.98
Detection of imprinting and heterogeneous maternal effects on high blood pressure using Framingham Heart Study data. BMC Proc (2009) 0.97
Class discovery and classification of tumor samples using mixture modeling of gene expression data--a unified approach. Bioinformatics (2004) 0.97
Nonparametric disequilibrium mapping of functional sites using haplotypes of multiple tightly linked single-nucleotide polymorphism markers. Genetics (2003) 0.97
Haplotyping using SIMPLE: caution on ignoring interference. Genet Epidemiol (2003) 0.95
A comparison of methods for intermediate fine mapping. Genet Epidemiol (2006) 0.94
A two-step procedure for constructing confidence intervals of trait loci with application to a rheumatoid arthritis dataset. Genet Epidemiol (2006) 0.93
Gene-based partial least-squares approaches for detecting rare variant associations with complex traits. BMC Proc (2011) 0.93
A quantitative proteomic workflow for characterization of frozen clinical biopsies: laser capture microdissection coupled with label-free mass spectrometry. J Proteomics (2012) 0.92
Sparse support vector machines with Lp penalty for biomarker identification. IEEE/ACM Trans Comput Biol Bioinform (2010) 0.92
Detection of parent-of-origin effects using general pedigree data. Genet Epidemiol (2010) 0.92
From sequencer to supercomputer: an automatic pipeline for managing and processing next generation sequencing data. AMIA Jt Summits Transl Sci Proc (2012) 0.92
Likelihood approach for detecting imprinting and in utero maternal effects using general pedigrees from prospective family-based association studies. Biometrics (2011) 0.92
Identification and characterization of CCAAT/Enhancer Binding proteindelta (C/EBPdelta) target genes in G0 growth arrested mammary epithelial cells. BMC Mol Biol (2008) 0.91
Joint detection of association, imprinting and maternal effects using all children and their parents. Eur J Hum Genet (2013) 0.91
Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data. BMC Bioinformatics (2007) 0.90
Preprocessing differential methylation hybridization microarray data. BioData Min (2011) 0.89
Linkage analysis of the simulated data - evaluations and comparisons of methods. BMC Genet (2003) 0.89
Identifying differentially methylated genes using mixed effect and generalized least square models. BMC Bioinformatics (2009) 0.89
Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research. Proceedings (IEEE Int Conf Bioinformatics Biomed) (2009) 0.88
A confidence set inference method for identifying SNPs that regulate quantitative phenotypes. Hum Hered (2012) 0.87
Linkage analyses of rheumatoid arthritis and related quantitative phenotypes: the GAW15 experience. Genet Epidemiol (2007) 0.87
Integrated analysis identifies a class of androgen-responsive genes regulated by short combinatorial long-range mechanism facilitated by CTCF. Nucleic Acids Res (2012) 0.86
A hypermorphic SP1-binding CD24 variant associates with risk and progression of multiple sclerosis. Am J Transl Res (2012) 0.86
An optimum projection and noise reduction approach for detecting rare and common variants associated with complex diseases. Hum Hered (2012) 0.86
CpG island hypermethylation profiling of lung cancer using restriction landmark genomic scanning (RLGS) analysis. Cancer Biomark (2005) 0.86
Detecting associations of rare variants with common diseases: collapsing or haplotyping? Brief Bioinform (2015) 0.86
Analyzing ChIP-seq data: preprocessing, normalization, differential identification, and binding pattern characterization. Methods Mol Biol (2012) 0.85
Identifying hypermethylated CpG islands using a quantile regression model. BMC Bioinformatics (2011) 0.84
A confidence set inference procedure for gene mapping using markers with incomplete polymorphism. Hum Hered (2005) 0.84
Kullback-Leibler distance methods for detecting disease association with rare variants from sequencing data. Ann Hum Genet (2015) 0.83
Clinical characteristics and mode of inheritance of familial focal seizures in Standard Poodles. J Am Vet Med Assoc (2007) 0.83
ADAMTS13 activity and antigen during therapy and follow-up of patients with idiopathic thrombotic thrombocytopenic purpura: correlation with clinical outcome. Haematologica (2011) 0.81
A dynamic time order network for time-series gene expression data analysis. BMC Syst Biol (2012) 0.80
Effect of prophylactic cyclosporine therapy on ADAMTS13 biomarkers in patients with idiopathic thrombotic thrombocytopenic purpura. Am J Hematol (2008) 0.80
Detection of parent-of-origin effects for quantitative traits in complete and incomplete nuclear families with multiple children. Am J Epidemiol (2011) 0.80
A Bayesian mixture model for chromatin interaction data. Stat Appl Genet Mol Biol (2015) 0.80
Methylation analysis by microarray. Methods Mol Biol (2009) 0.79
Detection of parent-of-origin effects in complete and incomplete nuclear families with multiple affected children using multiple tightly linked markers. Hum Hered (2008) 0.79
Demographic and ADAMTS13 biomarker data as predictors of early recurrences of idiopathic thrombotic thrombocytopenic purpura. Eur J Haematol (2009) 0.79
Haplotype association analysis of North American Rheumatoid Arthritis Consortium data using a generalized linear model with regularization. BMC Proc (2009) 0.79
XMCPDT does have correct type I error rates. Am J Hum Genet (2008) 0.79
Genome-wide tagging SNPs with entropy-based Monte Carlo method. J Comput Biol (2006) 0.78
Integrative genome-wide chromatin signature analysis using finite mixture models. BMC Genomics (2012) 0.78
Feature selection in finite mixture of sparse normal linear models in high-dimensional feature space. Biostatistics (2010) 0.78
TopKLists: a comprehensive R package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked lists. Stat Appl Genet Mol Biol (2015) 0.77
Incorporating covariates in mapping heterogeneous traits: a hierarchical model using empirical Bayes estimation. Genet Epidemiol (2007) 0.77
A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data. BMC Bioinformatics (2012) 0.77
Serial analysis of gene expression profiles of adult and aged mouse cerebellum. Neurobiol Aging (2007) 0.77
A likelihood-based procedure for obtaining confidence intervals of disease loci with general pedigree data. BMC Proc (2007) 0.77
Modeling and analysis of multi-library, multi-group SAGE data with application to a study of mouse cerebellum. Biometrics (2007) 0.77
A new Bayesian approach incorporating covariate information for heterogeneity and its comparison with HLOD. BMC Genet (2005) 0.77
Statistical methods for detecting differentially methylated regions based on MethylCap-seq data. Brief Bioinform (2015) 0.76
Regulation of adipose oestrogen output by mechanical stress. Nat Commun (2013) 0.76
Confidence intervals for putative quantitative trait loci - development and applications of new linkage methods. BMC Proc (2007) 0.75
Interval estimation of disease loci: development and applications of new linkage methods. BMC Genet (2005) 0.75
Regularization in finite mixture of regression models with diverging number of parameters. Biometrics (2013) 0.75
Finding starting points for Markov chain Monte Carlo analysis of genetic data from large and complex pedigrees. Genet Epidemiol (2003) 0.75
Evaluation and comparison of methods for recapitulation of 3D spatial chromatin structures. Brief Bioinform (2017) 0.75
Evaluations of maximization procedures for estimating linkage parameters under heterogeneity. Genet Epidemiol (2004) 0.75
Information gain for genetic parameter estimation with incorporation of marker data. Biometrics (2003) 0.75