Published in J Virol on March 03, 2010
The influence of external factors on bacteriophages--review. Folia Microbiol (Praha) (2011) 1.22
Computational design of a protein-based enzyme inhibitor. J Mol Biol (2013) 0.98
Related haloarchaeal pleomorphic viruses contain different genome types. Nucleic Acids Res (2012) 0.95
Crystal structure of ATV(ORF273), a new fold for a thermo- and acido-stable protein from the Acidianus two-tailed virus. PLoS One (2012) 0.79
A survey of protein structures from archaeal viruses. Life (Basel) (2013) 0.76
Crystal structure of PAV1-137: a protein from the virus PAV1 that infects Pyrococcus abyssi. Archaea (2013) 0.75
A short history of SHELX. Acta Crystallogr A (2007) 7339.18
Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr (2004) 227.01
The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr (1994) 187.88
Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D Biol Crystallogr (1997) 137.43
UCSF Chimera--a visualization system for exploratory research and analysis. J Comput Chem (2004) 112.47
Scaling and assessment of data quality. Acta Crystallogr D Biol Crystallogr (2005) 61.38
PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr D Biol Crystallogr (2002) 53.61
Electrostatics of nanosystems: application to microtubules and the ribosome. Proc Natl Acad Sci U S A (2001) 42.14
CATH--a hierarchic classification of protein domain structures. Structure (1997) 29.95
Automated protein model building combined with iterative structure refinement. Nat Struct Biol (1999) 27.52
ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics (1999) 21.85
Use of TLS parameters to model anisotropic displacements in macromolecular refinement. Acta Crystallogr D Biol Crystallogr (2001) 21.01
Main-chain bond lengths and bond angles in protein structures. J Mol Biol (1993) 9.80
GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes. Methods Enzymol (2000) 7.46
The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Res (2004) 7.21
Crystal structure of the catalytic domain of HIV-1 integrase: similarity to other polynucleotidyl transferases. Science (1994) 6.69
Crystal structure of the ribonuclease H domain of HIV-1 reverse transcriptase. Science (1991) 5.42
Conserved domains in DNA repair proteins and evolution of repair systems. Nucleic Acids Res (1999) 4.80
Structure and function of type II restriction endonucleases. Nucleic Acids Res (2001) 4.78
Making and breaking nucleic acids: two-Mg2+-ion catalysis and substrate specificity. Mol Cell (2006) 4.26
Viruses of the Archaea: a unifying view. Nat Rev Microbiol (2006) 2.61
Three-dimensional structure of ribonuclease H from E. coli. Nature (1990) 2.58
Atomic structure of the RuvC resolvase: a holliday junction-specific endonuclease from E. coli. Cell (1994) 2.55
Structure of the bacteriophage Mu transposase core: a common structural motif for DNA transposition and retroviral integration. Cell (1995) 2.44
Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses. Proc Natl Acad Sci U S A (2005) 2.26
High-resolution structure of the catalytic domain of avian sarcoma virus integrase. J Mol Biol (1995) 2.16
Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life. Virus Res (2006) 2.02
AFV1, a novel virus infecting hyperthermophilic archaea of the genus acidianus. Virology (2003) 1.56
A unique virus release mechanism in the Archaea. Proc Natl Acad Sci U S A (2009) 1.47
Transcriptome analysis of infection of the archaeon Sulfolobus solfataricus with Sulfolobus turreted icosahedral virus. J Virol (2008) 1.37
A topological model of the baseplate of lactococcal phage Tuc2009. J Biol Chem (2007) 1.36
Particle assembly and ultrastructural features associated with replication of the lytic archaeal virus sulfolobus turreted icosahedral virus. J Virol (2009) 1.36
A winged-helix protein from Sulfolobus turreted icosahedral virus points toward stabilizing disulfide bonds in the intracellular proteins of a hyperthermophilic virus. Virology (2007) 1.20
Transcription of the rod-shaped viruses SIRV1 and SIRV2 of the hyperthermophilic archaeon sulfolobus. J Bacteriol (2004) 1.19
Elucidating the transcription cycle of the UV-inducible hyperthermophilic archaeal virus SSV1 by DNA microarrays. Virology (2007) 1.18
MutH complexed with hemi- and unmethylated DNAs: coupling base recognition and DNA cleavage. Mol Cell (2005) 1.18
Structure of A197 from Sulfolobus turreted icosahedral virus: a crenarchaeal viral glycosyltransferase exhibiting the GT-A fold. J Virol (2006) 1.15
A new DNA binding protein highly conserved in diverse crenarchaeal viruses. Virology (2007) 1.12
Catalytic center of an archaeal type 2 ribonuclease H as revealed by X-ray crystallographic and mutational analyses. Protein Sci (2001) 1.08
Cysteine usage in Sulfolobus spindle-shaped virus 1 and extension to hyperthermophilic viruses in general. Virology (2008) 1.05
Structure and function of nucleases in DNA repair: shape, grip and blade of the DNA scissors. Oncogene (2002) 1.01
Structure of D-63 from sulfolobus spindle-shaped virus 1: surface properties of the dimeric four-helix bundle suggest an adaptor protein function. J Virol (2004) 1.01
Crystal structure of F-93 from Sulfolobus spindle-shaped virus 1, a winged-helix DNA binding protein. J Virol (2004) 0.95
Crystal structure of AFV3-109, a highly conserved protein from crenarchaeal viruses. Virol J (2007) 0.94
Novel archaeal plasmid pAH1 and its interactions with the lipothrixvirus AFV1. Mol Microbiol (2008) 0.90
Viruses in acidic geothermal environments of the Kamchatka Peninsula. Res Microbiol (2008) 0.86
The thermo- and acido-stable ORF-99 from the archaeal virus AFV1. Protein Sci (2009) 0.84
The crystal structure of ORF14 from Sulfolobus islandicus filamentous virus. Proteins (2009) 0.82
Crystal structure of AFV1-102, a protein from the acidianus filamentous virus 1. Protein Sci (2009) 0.81
A putative viral defence mechanism in archaeal cells. Archaea (2006) 4.84
Protein production and purification. Nat Methods (2008) 3.97
CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties. Mol Microbiol (2009) 3.37
The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. J Bacteriol (2005) 2.31
Discovery of an RNA virus 3'->5' exoribonuclease that is critically involved in coronavirus RNA synthesis. Proc Natl Acad Sci U S A (2006) 2.07
Inhibitory signalling to the Arp2/3 complex steers cell migration. Nature (2013) 2.06
ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome. Nat Methods (2007) 2.04
A common evolutionary origin for tailed-bacteriophage functional modules and bacterial machineries. Microbiol Mol Biol Rev (2011) 1.92
Receptor-binding protein of Lactococcus lactis phages: identification and characterization of the saccharide receptor-binding site. J Bacteriol (2006) 1.85
Lactococcal bacteriophage p2 receptor-binding protein structure suggests a common ancestor gene with bacterial and mammalian viruses. Nat Struct Mol Biol (2005) 1.84
Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere. Microbiol Mol Biol Rev (2011) 1.78
Structural biology of type VI secretion systems. Philos Trans R Soc Lond B Biol Sci (2012) 1.72
A medium-throughput crystallization approach. Acta Crystallogr D Biol Crystallogr (2002) 1.72
Structural and functional basis for ADP-ribose and poly(ADP-ribose) binding by viral macro domains. J Virol (2006) 1.70
The Scottish Structural Proteomics Facility: targets, methods and outputs. J Struct Funct Genomics (2010) 1.66
Zinc induces structural reorganization of gelatin binding domain from human fibronectin and affects collagen binding. Structure (2010) 1.63
The archeoviruses. FEMS Microbiol Rev (2011) 1.62
The severe acute respiratory syndrome-coronavirus replicative protein nsp9 is a single-stranded RNA-binding subunit unique in the RNA virus world. Proc Natl Acad Sci U S A (2004) 1.61
Modular structure of the receptor binding proteins of Lactococcus lactis phages. The RBP structure of the temperate phage TP901-1. J Biol Chem (2006) 1.57
AFV1, a novel virus infecting hyperthermophilic archaea of the genus acidianus. Virology (2003) 1.56
Integrated conformational and lipid-sensing regulation of endosomal ArfGEF BRAG2. PLoS Biol (2013) 1.54
Medium-scale structural genomics: strategies for protein expression and crystallization. Acc Chem Res (2003) 1.53
Position paper: the creation of a rational scheme for the nomenclature of viruses of Bacteria and Archaea. Environ Microbiol (2009) 1.53
Structure of lactococcal phage p2 baseplate and its mechanism of activation. Proc Natl Acad Sci U S A (2010) 1.53
Three camelid VHH domains in complex with porcine pancreatic alpha-amylase. Inhibition and versatility of binding topology. J Biol Chem (2002) 1.51
Mobile elements in archaeal genomes. FEMS Microbiol Lett (2002) 1.51
Virology: independent virus development outside a host. Nature (2005) 1.50
A unique virus release mechanism in the Archaea. Proc Natl Acad Sci U S A (2009) 1.47
Directed in vitro evolution and crystallographic analysis of a peptide-binding single chain antibody fragment (scFv) with low picomolar affinity. J Biol Chem (2004) 1.46
Roles of viruses in the environment. Environ Microbiol (2009) 1.45
Genome analyses of Icelandic strains of Sulfolobus islandicus, model organisms for genetic and virus-host interaction studies. J Bacteriol (2011) 1.45
Towards a structural comprehension of bacterial type VI secretion systems: characterization of the TssJ-TssM complex of an Escherichia coli pathovar. PLoS Pathog (2011) 1.44
Crystal structure of the measles virus phosphoprotein domain responsible for the induced folding of the C-terminal domain of the nucleoprotein. J Biol Chem (2003) 1.43
Structure of yeast Dom34: a protein related to translation termination factor Erf1 and involved in No-Go decay. J Biol Chem (2008) 1.39
Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism. Proc Natl Acad Sci U S A (2012) 1.37
Structural aspects of sexual attraction and chemical communication in insects. Trends Biochem Sci (2004) 1.37
A topological model of the baseplate of lactococcal phage Tuc2009. J Biol Chem (2007) 1.36
The crystal structure of a cockroach pheromone-binding protein suggests a new ligand binding and release mechanism. J Biol Chem (2003) 1.36
Prp43p contains a processive helicase structural architecture with a specific regulatory domain. EMBO J (2010) 1.36
An archaeal orthologue of the universal protein Kae1 is an iron metalloprotein which exhibits atypical DNA-binding properties and apurinic-endonuclease activity in vitro. Nucleic Acids Res (2007) 1.36
Structural basis of enzyme encapsulation into a bacterial nanocompartment. Nat Struct Mol Biol (2008) 1.36
Crystal structure and mechanistic determinants of SARS coronavirus nonstructural protein 15 define an endoribonuclease family. Proc Natl Acad Sci U S A (2006) 1.33
Automated expression and solubility screening of His-tagged proteins in 96-well format. Anal Biochem (2005) 1.32
LppX is a lipoprotein required for the translocation of phthiocerol dimycocerosates to the surface of Mycobacterium tuberculosis. EMBO J (2006) 1.31
Catalytic mechanism and structure of viral flavin-dependent thymidylate synthase ThyX. J Biol Chem (2006) 1.31
Structural inhibition of the colicin D tRNase by the tRNA-mimicking immunity protein. EMBO J (2004) 1.31
Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism. Environ Microbiol (2009) 1.27
Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity. BMC Biol (2014) 1.25
Direct in vivo screening of intrabody libraries constructed on a highly stable single-chain framework. J Biol Chem (2002) 1.25
Stygiolobus rod-shaped virus and the interplay of crenarchaeal rudiviruses with the CRISPR antiviral system. J Bacteriol (2008) 1.24
High-throughput automated refolding screening of inclusion bodies. Protein Sci (2004) 1.23
The great billion-year war between ribosome- and capsid-encoding organisms (cells and viruses) as the major source of evolutionary novelties. Ann N Y Acad Sci (2009) 1.23
Morphology and genome organization of the virus PSV of the hyperthermophilic archaeal genera Pyrobaculum and Thermoproteus: a novel virus family, the Globuloviridae. Virology (2004) 1.23
Solution and electron microscopy characterization of lactococcal phage baseplates expressed in Escherichia coli. J Struct Biol (2010) 1.22
Biophysical properties of camelid V(HH) domains compared to those of human V(H)3 domains. Biochemistry (2002) 1.22
The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C. Archaea (2007) 1.22
Crystal structure of the receptor-binding protein head domain from Lactococcus lactis phage bIL170. J Virol (2006) 1.22
Structure of the archaeal Kae1/Bud32 fusion protein MJ1130: a model for the eukaryotic EKC/KEOPS subcomplex. EMBO J (2008) 1.21
Crystal structure of the yeast Phox homology (PX) domain protein Grd19p complexed to phosphatidylinositol-3-phosphate. J Biol Chem (2003) 1.20
Gcn4 misregulation reveals a direct role for the evolutionary conserved EKC/KEOPS in the t6A modification of tRNAs. Nucleic Acids Res (2011) 1.20
Expression and characterization of the protein Rv1399c from Mycobacterium tuberculosis. A novel carboxyl esterase structurally related to the HSL family. Eur J Biochem (2004) 1.20
Crystal structure of E.coli alcohol dehydrogenase YqhD: evidence of a covalently modified NADP coenzyme. J Mol Biol (2004) 1.20
HalX: an open-source LIMS (Laboratory Information Management System) for small- to large-scale laboratories. Acta Crystallogr D Biol Crystallogr (2005) 1.19
Crystal structure and function of a DARPin neutralizing inhibitor of lactococcal phage TP901-1: comparison of DARPin and camelid VHH binding mode. J Biol Chem (2009) 1.19
Transcription of the rod-shaped viruses SIRV1 and SIRV2 of the hyperthermophilic archaeon sulfolobus. J Bacteriol (2004) 1.19
The structure of an archaeal homodimeric ligase which has RNA circularization activity. Protein Sci (2008) 1.16
A novel rudivirus, ARV1, of the hyperthermophilic archaeal genus Acidianus. Virology (2005) 1.16
Crystal structure of bacteriophage SPP1 distal tail protein (gp19.1): a baseplate hub paradigm in gram-positive infecting phages. J Biol Chem (2010) 1.16
Structure of protein phosphatase methyltransferase 1 (PPM1), a leucine carboxyl methyltransferase involved in the regulation of protein phosphatase 2A activity. J Biol Chem (2003) 1.15
Activation of the LicT transcriptional antiterminator involves a domain swing/lock mechanism provoking massive structural changes. J Biol Chem (2005) 1.15