PubRank

Daniel S Rokhsar

Author PubWeight™ 214.24‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 2004 20.20
2 The Sorghum bicolor genome and the diversification of grasses. Nature 2009 14.62
3 Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res 2011 11.32
4 The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 2007 11.15
5 The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 2002 11.11
6 The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 2004 9.97
7 Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 2007 9.79
8 Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Res 2011 8.38
9 The amphioxus genome and the evolution of the chordate karyotype. Nature 2008 8.03
10 Rapid whole-genome mutational profiling using next-generation sequencing technologies. Genome Res 2008 8.01
11 Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. Nature 2008 6.81
12 Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science 2006 6.74
13 The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature 2008 6.70
14 The Trichoplax genome and the nature of placozoans. Nature 2008 5.56
15 Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nat Biotechnol 2008 5.38
16 The Amphimedon queenslandica genome and the evolution of animal complexity. Nature 2010 5.11
17 The genome of the Western clawed frog Xenopus tropicalis. Science 2010 4.70
18 The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nat Genet 2013 4.20
19 Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience 2013 4.11
20 The dynamic genome of Hydra. Nature 2010 4.00
21 Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature 2012 4.00
22 Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri. Science 2010 3.70
23 The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Res 2008 3.04
24 The genome of Naegleria gruberi illuminates early eukaryotic versatility. Cell 2010 2.93
25 The DNA sequence and biology of human chromosome 19. Nature 2004 2.29
26 Promoter elements associated with RNA Pol II stalling in the Drosophila embryo. Proc Natl Acad Sci U S A 2008 2.25
27 Evidence for a microRNA expansion in the bilaterian ancestor. Dev Genes Evol 2006 2.11
28 Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). Plant J 2013 2.02
29 Genesis and expansion of metazoan transcription factor gene classes. Mol Biol Evol 2008 2.01
30 Insights into bilaterian evolution from three spiralian genomes. Nature 2012 1.97
31 Parallel evolution of nacre building gene sets in molluscs. Mol Biol Evol 2009 1.88
32 Genomic analysis of immunity in a Urochordate and the emergence of the vertebrate immune system: "waiting for Godot". Immunogenetics 2003 1.75
33 The Cassava Genome: Current Progress, Future Directions. Trop Plant Biol 2012 1.75
34 The NK homeobox gene cluster predates the origin of Hox genes. Curr Biol 2007 1.71
35 Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans. Nat Struct Mol Biol 2010 1.69
36 The DNA sequence and comparative analysis of human chromosome 5. Nature 2004 1.62
37 Accelerated gene evolution and subfunctionalization in the pseudotetraploid frog Xenopus laevis. BMC Biol 2007 1.59
38 The evolutionary origin of hedgehog proteins. Curr Biol 2007 1.40
39 The sequence and analysis of duplication-rich human chromosome 16. Nature 2004 1.38
40 Meraculous: de novo genome assembly with short paired-end reads. PLoS One 2011 1.37
41 Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes. BMC Genomics 2010 1.32
42 Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing. Proc Natl Acad Sci U S A 2013 1.21
43 Domain shuffling and the evolution of vertebrates. Genome Res 2009 1.18
44 Transcription factor binding site identification using the self-organizing map. Bioinformatics 2005 1.11
45 Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis. Genome Res 2005 1.09
46 Early evolution of the LIM homeobox gene family. BMC Biol 2010 1.08
47 A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy. BMC Genomics 2012 1.04
48 A New Nomenclature of Xenopus laevis Chromosomes Based on the Phylogenetic Relationship to Silurana/Xenopus tropicalis. Cytogenet Genome Res 2015 1.01
49 Conservation of linkage and evolution of developmental function within the Tbx2/3/4/5 subfamily of T-box genes: implications for the origin of vertebrate limbs. Dev Genes Evol 2008 0.97
50 A proposal to sequence the amphioxus genome submitted to the Joint Genome Institute of the US Department of Energy. J Exp Zool B Mol Dev Evol 2003 0.92
51 The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii. New Phytol 2014 0.88
52 Old can be new again: HAPPY whole genome sequencing, mapping and assembly. Int J Biol Sci 2009 0.88
53 A segmental genomic duplication generates a functional intron. Nat Commun 2011 0.84
54 A detailed gene expression study of the Miscanthus genus reveals changes in the transcriptome associated with the rejuvenation of spring rhizomes. BMC Genomics 2013 0.84
55 Comparative pair-wise domain-combinations for screening the clade specific domain-architectures in metazoan genomes. Genome Inform 2007 0.77
56 Development and initial characterization of a HAPPY panel for mapping the X. tropicalis genome. Int J Biol Sci 2011 0.75