PubRank

Joel S Bader

Author PubWeight™ 235.58‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005 150.21
2 Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets. Nat Genet 2006 6.74
3 A DNA integrity network in the yeast Saccharomyces cerevisiae. Cell 2006 6.61
4 DNA Pooling: a tool for large-scale association studies. Nat Rev Genet 2002 5.66
5 A robust toolkit for functional profiling of the yeast genome. Mol Cell 2004 4.69
6 Human Proteinpedia enables sharing of human protein data. Nat Biotechnol 2008 4.21
7 Total synthesis of a functional designer eukaryotic chromosome. Science 2014 3.31
8 Synthetic chromosome arms function in yeast and generate phenotypic diversity by design. Nature 2011 2.81
9 RNA interference analysis of Legionella in Drosophila cells: exploitation of early secretory apparatus dynamics. PLoS Pathog 2006 2.44
10 Phosphoproteomic analysis of Her2/neu signaling and inhibition. Proc Natl Acad Sci U S A 2006 2.30
11 Gene function prediction from congruent synthetic lethal interactions in yeast. Mol Syst Biol 2005 2.04
12 A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation. Genes Dev 2008 2.01
13 Gene synthesis demystified. Trends Biotechnol 2008 2.00
14 Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants. Cell 2008 1.99
15 Global synthetic-lethality analysis and yeast functional profiling. Trends Genet 2005 1.82
16 Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps. PLoS Comput Biol 2007 1.81
17 Finding friends and enemies in an enemies-only network: a graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions. Genome Res 2008 1.61
18 Comparisons of tyrosine phosphorylated proteins in cells expressing lung cancer-specific alleles of EGFR and KRAS. Proc Natl Acad Sci U S A 2008 1.51
19 NeMo: Network Module identification in Cytoscape. BMC Bioinformatics 2010 1.49
20 Optimal selection strategies for QTL mapping using pooled DNA samples. Eur J Hum Genet 2002 1.45
21 Twist1-induced dissemination preserves epithelial identity and requires E-cadherin. J Cell Biol 2014 1.42
22 Teaching synthetic biology, bioinformatics and engineering to undergraduates: the interdisciplinary Build-a-Genome course. Genetics 2008 1.41
23 Gene-based tests of association. PLoS Genet 2011 1.34
24 Retracted Functional dissection of lysine deacetylases reveals that HDAC1 and p300 regulate AMPK. Nature 2012 1.29
25 Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast. BMC Bioinformatics 2005 1.22
26 Profiling diverse compounds by flux- and electrophysiology-based primary screens for inhibition of human Ether-à-go-go related gene potassium channels. Assay Drug Dev Technol 2010 1.20
27 Precision and recall estimates for two-hybrid screens. Bioinformatics 2008 1.14
28 Temporal profiling of the secretome during adipogenesis in humans. J Proteome Res 2010 1.07
29 Genetic Interaction Motif Finding by expectation maximization--a novel statistical model for inferring gene modules from synthetic lethality. BMC Bioinformatics 2005 1.07
30 GeneDesign 3.0 is an updated synthetic biology toolkit. Nucleic Acids Res 2010 1.05
31 HistoneHits: a database for histone mutations and their phenotypes. Genome Res 2009 1.04
32 Resolving the structure of interactomes with hierarchical agglomerative clustering. BMC Bioinformatics 2011 1.00
33 Assembling DNA fragments by USER fusion. Methods Mol Biol 2012 0.99
34 Probabilistic inference of molecular networks from noisy data sources. Bioinformatics 2004 0.98
35 CLONEQC: lightweight sequence verification for synthetic biology. Nucleic Acids Res 2010 0.95
36 Assembling large DNA segments in yeast. Methods Mol Biol 2012 0.94
37 Novel peptide-specific quantitative structure-activity relationship (QSAR) analysis applied to collagen IV peptides with antiangiogenic activity. J Med Chem 2011 0.91
38 Ab initio prediction of transcription factor binding sites. Pac Symp Biocomput 2007 0.91
39 The Build-a-Genome course. Methods Mol Biol 2012 0.91
40 How networks change with time. Bioinformatics 2012 0.91
41 Early innate immunity determines outcome of Mycobacterium tuberculosis pulmonary infection in rabbits. Cell Commun Signal 2013 0.90
42 Metabolic flux correlations, genetic interactions, and disease. J Comput Biol 2009 0.87
43 Comprehensive evaluation of imputation performance in African Americans. J Hum Genet 2012 0.87
44 RNA-Seq optimization with eQTL gold standards. BMC Genomics 2013 0.87
45 Analysis of VEGF--a regulated gene expression in endothelial cells to identify genes linked to angiogenesis. PLoS One 2011 0.87
46 Dynamic networks from hierarchical bayesian graph clustering. PLoS One 2010 0.86
47 Predicting functional associations from metabolism using bi-partite network algorithms. BMC Syst Biol 2010 0.85
48 Molecular immunologic correlates of spontaneous latency in a rabbit model of pulmonary tuberculosis. Cell Commun Signal 2013 0.85
49 The housekeeping gene hypoxanthine guanine phosphoribosyltransferase (HPRT) regulates multiple developmental and metabolic pathways of murine embryonic stem cell neuronal differentiation. PLoS One 2013 0.84
50 Constructing the angiome: a global angiogenesis protein interaction network. Physiol Genomics 2012 0.82
51 Fast association tests for genes with FAST. PLoS One 2013 0.82
52 Systems biology-based identification of Mycobacterium tuberculosis persistence genes in mouse lungs. MBio 2014 0.80
53 Angiogenesis-associated crosstalk between collagens, CXC chemokines, and thrombospondin domain-containing proteins. Ann Biomed Eng 2011 0.80
54 Structure-based ab initio prediction of transcription factor-binding sites. Methods Mol Biol 2009 0.79
55 Design-A-Gene with GeneDesign. Methods Mol Biol 2012 0.77
56 Analytical approximations for the amplitude and period of a relaxation oscillator. BMC Syst Biol 2009 0.76
57 Decoding transcriptional regulatory interactions. Physica D 2006 0.75
58 HapZipper: sharing HapMap populations just got easier. Nucleic Acids Res 2012 0.75
59 Modeling intercellular transfer of biomolecules through tunneling nanotubes. Bull Math Biol 2013 0.75
60 Systems approaches for pharmacogenetics and pharmacogenomics. Pharmacogenomics 2008 0.75