PubRank

Michael McClelland

Author PubWeight™ 149.69‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science 2006 4.60
2 In silico dissection of cell-type-associated patterns of gene expression in prostate cancer. Proc Natl Acad Sci U S A 2004 3.65
3 Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis. Proc Natl Acad Sci U S A 2002 3.64
4 Stem cell-like micro-RNA signature driven by Myc in aggressive liver cancer. Proc Natl Acad Sci U S A 2010 2.91
5 Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species. PLoS One 2010 2.41
6 Gene expression patterns during swarming in Salmonella typhimurium: genes specific to surface growth and putative new motility and pathogenicity genes. Mol Microbiol 2004 2.32
7 Silencing of xenogeneic DNA by H-NS-facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA. Genes Dev 2007 2.03
8 Global regulation by CsrA in Salmonella typhimurium. Mol Microbiol 2003 2.02
9 WebArray: an online platform for microarray data analysis. BMC Bioinformatics 2005 2.01
10 Regulation of Salmonella typhimurium virulence gene expression by cationic antimicrobial peptides. Mol Microbiol 2003 2.01
11 Identification of new flagellar genes of Salmonella enterica serovar Typhimurium. J Bacteriol 2006 1.89
12 Analysis of pools of targeted Salmonella deletion mutants identifies novel genes affecting fitness during competitive infection in mice. PLoS Pathog 2009 1.83
13 Co-regulation of Salmonella enterica genes required for virulence and resistance to antimicrobial peptides by SlyA and PhoP/PhoQ. Mol Microbiol 2005 1.80
14 Salmonella enterica serovar Typhi strains from which SPI7, a 134-kilobase island with genes for Vi exopolysaccharide and other functions, has been deleted. J Bacteriol 2004 1.79
15 Comparative analysis of genome sequences covering the seven cronobacter species. PLoS One 2012 1.79
16 Diagnosis of prostate cancer using differentially expressed genes in stroma. Cancer Res 2011 1.78
17 Genome-wide analysis of histone H3 acetylation patterns in AML identifies PRDX2 as an epigenetically silenced tumor suppressor gene. Blood 2011 1.73
18 DNA microarray-based typing of an atypical monophasic Salmonella enterica serovar. J Clin Microbiol 2002 1.71
19 Identification of promoters bound by c-Jun/ATF2 during rapid large-scale gene activation following genotoxic stress. Mol Cell 2004 1.67
20 Survey of differentially methylated promoters in prostate cancer cell lines. Neoplasia 2005 1.63
21 Transcriptome of Salmonella enterica serovar Typhi within macrophages revealed through the selective capture of transcribed sequences. Proc Natl Acad Sci U S A 2006 1.59
22 Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium. PLoS Pathog 2009 1.58
23 Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation. PLoS One 2009 1.58
24 A non-redundant microarray of genes for two related bacteria. Nucleic Acids Res 2003 1.53
25 Microarray analysis identifies Salmonella genes belonging to the low-shear modeled microgravity regulon. Proc Natl Acad Sci U S A 2002 1.50
26 In silico estimates of tissue components in surgical samples based on expression profiling data. Cancer Res 2010 1.50
27 Flagellin fusion proteins as adjuvants or vaccines induce specific immune responses. Infect Immun 2004 1.49
28 Low-Shear modeled microgravity alters the Salmonella enterica serovar typhimurium stress response in an RpoS-independent manner. Appl Environ Microbiol 2002 1.45
29 FNR is a global regulator of virulence and anaerobic metabolism in Salmonella enterica serovar Typhimurium (ATCC 14028s). J Bacteriol 2007 1.43
30 Comparison of the PhoPQ regulon in Escherichia coli and Salmonella typhimurium. J Mol Evol 2005 1.41
31 Humanized nonobese diabetic-scid IL2rgammanull mice are susceptible to lethal Salmonella Typhi infection. Proc Natl Acad Sci U S A 2010 1.41
32 Lateral gene transfer in Salmonella. Microbes Infect 2003 1.41
33 Virulence gene profiling and pathogenicity characterization of non-typhoidal Salmonella accounted for invasive disease in humans. PLoS One 2013 1.31
34 Alternative sigma factor interactions in Salmonella: sigma and sigma promote antioxidant defences by enhancing sigma levels. Mol Microbiol 2005 1.29
35 The RcsCDB signaling system and swarming motility in Salmonella enterica serovar typhimurium: dual regulation of flagellar and SPI-2 virulence genes. J Bacteriol 2007 1.29
36 Chromatin modifications induced by PML-RARalpha repress critical targets in leukemogenesis as analyzed by ChIP-Chip. Blood 2007 1.28
37 Correlation of phenotype with the genotype of egg-contaminating Salmonella enterica serovar Enteritidis. Appl Environ Microbiol 2005 1.27
38 WebArrayDB: cross-platform microarray data analysis and public data repository. Bioinformatics 2009 1.27
39 EnteriX 2003: Visualization tools for genome alignments of Enterobacteriaceae. Nucleic Acids Res 2003 1.20
40 Media ion composition controls regulatory and virulence response of Salmonella in spaceflight. PLoS One 2008 1.19
41 Evolutionary Genomics of Salmonella enterica Subspecies. MBio 2013 1.17
42 Microarray for molecular typing of Salmonella enterica serovars. Mol Cell Probes 2008 1.17
43 Erwinia toletana sp. nov., associated with Pseudomonas savastanoi-induced tree knots. Int J Syst Evol Microbiol 2004 1.17
44 Host gene expression changes and DNA amplification during temperate phage induction. J Bacteriol 2005 1.16
45 DNA microarray detection of antimicrobial resistance genes in diverse bacteria. Int J Antimicrob Agents 2006 1.15
46 Delineation of the Salmonella enterica serovar Typhimurium HilA regulon through genome-wide location and transcript analysis. J Bacteriol 2007 1.11
47 Salmonella promoters preferentially activated inside tumors. Cancer Res 2008 1.11
48 Profiling of histone H3 lysine 9 trimethylation levels predicts transcription factor activity and survival in acute myeloid leukemia. Blood 2010 1.11
49 Uncovering a large set of genes that affect surface motility in Salmonella enterica serovar Typhimurium. J Bacteriol 2006 1.10
50 Infection of mice by Salmonella enterica serovar Enteritidis involves additional genes that are absent in the genome of serovar Typhimurium. Infect Immun 2011 1.09
51 Salmonella enterica serovar Typhimurium requires the Lpf, Pef, and Tafi fimbriae for biofilm formation on HEp-2 tissue culture cells and chicken intestinal epithelium. Infect Immun 2006 1.07
52 L-asparaginase II produced by Salmonella typhimurium inhibits T cell responses and mediates virulence. Cell Host Microbe 2012 1.06
53 DNA amplification and rearrangements in archival Salmonella enterica serovar Typhimurium LT2 cultures. J Bacteriol 2004 1.06
54 Egr1 regulates the coordinated expression of numerous EGF receptor target genes as identified by ChIP-on-chip. Genome Biol 2008 1.06
55 The Fur regulon in anaerobically grown Salmonella enterica sv. Typhimurium: identification of new Fur targets. BMC Microbiol 2011 1.05
56 Spontaneous excision of the Salmonella enterica serovar Enteritidis-specific defective prophage-like element phiSE14. J Bacteriol 2010 1.04
57 The CorA Mg2+ channel is required for the virulence of Salmonella enterica serovar typhimurium. J Bacteriol 2008 1.03
58 PhoP-induced genes within Salmonella pathogenicity island 1. J Bacteriol 2006 1.02
59 Specific responses of Salmonella enterica to tomato varieties and fruit ripeness identified by in vivo expression technology. PLoS One 2010 1.02
60 The accuracy of survival time prediction for patients with glioma is improved by measuring mitotic spindle checkpoint gene expression. PLoS One 2011 1.02
61 Development of a DNA microarray to detect antimicrobial resistance genes identified in the National Center for Biotechnology Information database. Microb Drug Resist 2010 1.02
62 In vivo expression of Salmonella enterica serotype Typhi genes in the blood of patients with typhoid fever in Bangladesh. PLoS Negl Trop Dis 2011 1.01
63 Genome-wide analysis of the PreA/PreB (QseB/QseC) regulon of Salmonella enterica serovar Typhimurium. BMC Microbiol 2009 1.01
64 The intestinal fatty acid propionate inhibits Salmonella invasion through the post-translational control of HilD. Mol Microbiol 2013 1.00
65 Analysis of the ArcA regulon in anaerobically grown Salmonella enterica sv. Typhimurium. BMC Microbiol 2011 0.99
66 Bile acids mimic oxidative stress induced upregulation of thioredoxin reductase in colon cancer cell lines. Carcinogenesis 2002 0.99
67 Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages. Emerg Infect Dis 2014 0.98
68 Egr1 signaling in prostate cancer. Cancer Biol Ther 2003 0.98
69 Nitric oxide antagonizes the acid tolerance response that protects Salmonella against innate gastric defenses. PLoS One 2008 0.98
70 The wisdom of the commons: ensemble tree classifiers for prostate cancer prognosis. Bioinformatics 2008 0.97
71 Evaluation of nested PCR in detection of Helicobacter pylori targeting a highly conserved gene: HSP60. Helicobacter 2008 0.97
72 Host restriction of Salmonella enterica serotype Typhimurium pigeon isolates does not correlate with loss of discrete genes. J Bacteriol 2004 0.97
73 The CpxR/CpxA two-component system up-regulates two Tat-dependent peptidoglycan amidases to confer bacterial resistance to antimicrobial peptide. J Biol Chem 2010 0.96
74 The 4-cysteine zinc-finger motif of the RNA polymerase regulator DksA serves as a thiol switch for sensing oxidative and nitrosative stress. Mol Microbiol 2014 0.96
75 Messenger RNAs under differential translational control in Ki-ras-transformed cells. Mol Cancer Res 2006 0.95
76 Analysis of Salmonella enterica serotype paratyphi A gene expression in the blood of bacteremic patients in Bangladesh. PLoS Negl Trop Dis 2010 0.95
77 Identification of specific gene sequences conserved in contemporary epidemic strains of Salmonella enterica. Appl Environ Microbiol 2006 0.95
78 Salmonella serovar identification using PCR-based detection of gene presence and absence. J Clin Microbiol 2008 0.95
79 High-throughput screening for salmonella avirulent mutants that retain targeting of solid tumors. Cancer Res 2010 0.93
80 Virulence of 32 Salmonella strains in mice. PLoS One 2012 0.93
81 Molecular and cellular characterization of a Salmonella enterica serovar Paratyphi a outbreak strain and the human immune response to infection. Clin Vaccine Immunol 2011 0.93
82 "Promoter array" studies identify cohorts of genes directly regulated by methylation, copy number change, or transcription factor binding in human cancer cells. Ann N Y Acad Sci 2005 0.91
83 Enhanced microarray performance using low complexity representations of the transcriptome. Nucleic Acids Res 2005 0.90
84 High-throughput comparison of gene fitness among related bacteria. BMC Genomics 2012 0.90
85 Requirement of siderophore biosynthesis for plant colonization by Salmonella enterica. Appl Environ Microbiol 2012 0.89
86 Analyzing microarray data using WebArray. Cold Spring Harb Protoc 2009 0.89
87 Abrogation of the twin arginine transport system in Salmonella enterica serovar Typhimurium leads to colonization defects during infection. PLoS One 2011 0.89
88 Salmonella exploits Arl8B-directed kinesin activity to promote endosome tubulation and cell-to-cell transfer. Cell Microbiol 2011 0.89
89 Hypochlorous acid and hydrogen peroxide-induced negative regulation of Salmonella enterica serovar Typhimurium ompW by the response regulator ArcA. BMC Microbiol 2012 0.88
90 Hydrogen-stimulated carbon acquisition and conservation in Salmonella enterica serovar Typhimurium. J Bacteriol 2011 0.88
91 Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium. BMC Genomics 2011 0.88
92 An accurate prostate cancer prognosticator using a seven-gene signature plus Gleason score and taking cell type heterogeneity into account. PLoS One 2012 0.88
93 Fitness costs and stability of a high-level ciprofloxacin resistance phenotype in Salmonella enterica serotype enteritidis: reduced infectivity associated with decreased expression of Salmonella pathogenicity island 1 genes. Antimicrob Agents Chemother 2009 0.87
94 Expression changes in the stroma of prostate cancer predict subsequent relapse. PLoS One 2012 0.87
95 Novel genetic tools for studying food-borne Salmonella. Curr Opin Biotechnol 2009 0.87
96 The NsrR regulon in nitrosative stress resistance of Salmonella enterica serovar Typhimurium. Mol Microbiol 2012 0.86
97 Microarray analysis of Mu transposition in Salmonella enterica, serovar Typhimurium: transposon exclusion by high-density DNA binding proteins. Mol Microbiol 2007 0.84
98 Novel determinants of intestinal colonization of Salmonella enterica serotype typhimurium identified in bovine enteric infection. Infect Immun 2013 0.84
99 Live attenuated S. Typhimurium vaccine with improved safety in immuno-compromised mice. PLoS One 2012 0.83
100 The AI-2-dependent regulator LsrR has a limited regulon in Salmonella Typhimurium. Cell Res 2010 0.83
101 Global transcriptional analysis of dehydrated Salmonella enterica serovar Typhimurium. Appl Environ Microbiol 2012 0.83
102 Increased HDAC1 deposition at hematopoietic promoters in AML and its association with patient survival. Leuk Res 2010 0.83
103 The EAL domain containing protein STM2215 (rtn) is needed during Salmonella infection and has cyclic di-GMP phosphodiesterase activity. Mol Microbiol 2013 0.83
104 Pigeon-associated strains of Salmonella enterica serovar Typhimurium phage type DT2 have genomic rearrangements at rRNA operons. Infect Immun 2004 0.82
105 Detection of a Salmonella enterica serovar California strain spreading in spanish feed mills and genetic characterization with DNA microarrays. Appl Environ Microbiol 2003 0.81
106 Consequences of disrupting Salmonella AI-2 signaling on interactions within soft rots. Phytopathology 2013 0.80
107 Selection of Salmonella enterica serovar Typhi genes involved during interaction with human macrophages by screening of a transposon mutant library. PLoS One 2012 0.80
108 Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ⁵⁴ (RpoN) regulon of Salmonella Typhimurium LT2. BMC Genomics 2013 0.79
109 Mapping and regulation of genes within Salmonella pathogenicity island 12 that contribute to in vivo fitness of Salmonella enterica Serovar Typhimurium. Infect Immun 2013 0.79
110 Evaluating oligonucleotide properties for DNA microarray probe design. Nucleic Acids Res 2010 0.79
111 A single step multiplex PCR for identification of six diarrheagenic E. coli pathotypes and Salmonella. Int J Med Microbiol 2013 0.78
112 Mechanisms of sulindac-induced apoptosis and cell cycle arrest. Cancer Lett 2005 0.78
113 Vertical arrays: microarrays of complex mixtures of nucleic acids. Methods Mol Biol 2006 0.77
114 A sample selection strategy to boost the statistical power of signature detection in cancer expression profile studies. Anticancer Agents Med Chem 2013 0.77
115 Probing the ArcA regulon under aerobic/ROS conditions in Salmonella enterica serovar Typhimurium. BMC Genomics 2013 0.76
116 Determination of the gene content of Salmonella genomes by microarray analysis. Methods Mol Biol 2007 0.76
117 Natural products and transforming growth factor-beta (TGF-β) signaling in cancer development and progression. Curr Cancer Drug Targets 2013 0.76
118 Whole-Genome Sequencing of Salmonella enterica subsp. enterica Serovar Cubana Strains Isolated from Agricultural Sources. Genome Announc 2014 0.75
119 Assessment of gene expression in many samples using vertical arrays. Nucleic Acids Res 2008 0.75
120 Characterization of an acid-inducible sulfatase in Salmonella enterica serovar typhimurium. Appl Environ Microbiol 2013 0.75
121 Erratum: Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings. Nat Genet 2017 0.75
122 Toxicogenomic analysis incorporating operon-transcriptional coupling and toxicant concentration-expression response: analysis of MX-treated Salmonella. BMC Bioinformatics 2007 0.75
123 Gene expression analysis of Salmonella enterica Enteritidis Nal(R) and Salmonella enterica Kentucky 3795 exposed to HCl and acetic acid in rich medium. Foodborne Pathog Dis 2012 0.75
124 Expression of HER2 in Breast Cancer Promotes a Massive Reorganization of Gene Activity and Suggests a Role for Epigenetic Regulation. J Data Mining Genomics Proteomics 2012 0.75
125 TabSQL: a MySQL tool to facilitate mapping user data to public databases. BMC Bioinformatics 2010 0.75
126 [Salmonella transcriptome during macrophage infection]. Med Sci (Paris) 2006 0.75
127 Microarray analysis using RNA arbitrarily primed PCR. Methods Mol Biol 2003 0.75