Published in PLoS One on March 19, 2008
Transcriptional regulation by Ferric Uptake Regulator (Fur) in pathogenic bacteria. Front Cell Infect Microbiol (2013) 1.26
Nitric oxide and salmonella pathogenesis. Front Microbiol (2011) 1.06
Fur negatively regulates hns and is required for the expression of HilA and virulence in Salmonella enterica serovar Typhimurium. J Bacteriol (2010) 1.06
S-bacillithiolation protects conserved and essential proteins against hypochlorite stress in firmicutes bacteria. Antioxid Redox Signal (2012) 1.04
Control of redox balance by the stringent response regulatory protein promotes antioxidant defenses of Salmonella. J Biol Chem (2010) 1.02
DNA damage and reactive nitrogen species are barriers to Vibrio cholerae colonization of the infant mouse intestine. PLoS Pathog (2011) 1.00
The 4-cysteine zinc-finger motif of the RNA polymerase regulator DksA serves as a thiol switch for sensing oxidative and nitrosative stress. Mol Microbiol (2014) 0.96
Redox sensor SsrB Cys203 enhances Salmonella fitness against nitric oxide generated in the host immune response to oral infection. Proc Natl Acad Sci U S A (2010) 0.95
Cysteine catabolism and cysteine desulfhydrase (CdsH/STM0458) in Salmonella enterica serovar typhimurium. J Bacteriol (2012) 0.91
DksA-dependent resistance of Salmonella enterica serovar Typhimurium against the antimicrobial activity of inducible nitric oxide synthase. Infect Immun (2012) 0.90
Salmonella utilizes D-glucosaminate via a mannose family phosphotransferase system permease and associated enzymes. J Bacteriol (2013) 0.83
Codependent and independent effects of nitric oxide-mediated suppression of PhoPQ and Salmonella pathogenicity island 2 on intracellular Salmonella enterica serovar typhimurium survival. Infect Immun (2009) 0.81
Stress response of Salmonella enterica serovar typhimurium to acidified nitrite. Appl Environ Microbiol (2014) 0.79
The Small RNA DsrA Influences the Acid Tolerance Response and Virulence of Salmonella enterica Serovar Typhimurium. Front Microbiol (2016) 0.78
Inhibited Production of iNOS by Murine J774 Macrophages Occurs via a phoP-Regulated Differential Expression of NFκB and AP-1. Interdiscip Perspect Infect Dis (2012) 0.75
Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A (2001) 132.88
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A (2000) 96.90
Acetylornithinase of Escherichia coli: partial purification and some properties. J Biol Chem (1956) 93.84
Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant. Gene (1995) 15.67
Construction of versatile low-copy-number vectors for cloning, sequencing and gene expression in Escherichia coli. Gene (1991) 14.15
A two-component regulatory system (phoP phoQ) controls Salmonella typhimurium virulence. Proc Natl Acad Sci U S A (1989) 9.79
A Salmonella locus that controls resistance to microbicidal proteins from phagocytic cells. Science (1989) 7.58
Adaptive acidification tolerance response of Salmonella typhimurium. J Bacteriol (1990) 5.36
Escherichia coli acid resistance: tales of an amateur acidophile. Nat Rev Microbiol (2004) 4.95
Ethanolamine utilization in Salmonella typhimurium: nucleotide sequence, protein expression, and mutational analysis of the cchA cchB eutE eutJ eutG eutH gene cluster. J Bacteriol (1995) 4.74
Gastric acid barrier to ingested microorganisms in man: studies in vivo and in vitro. Gut (1972) 4.59
Epitope tagging of chromosomal genes in Salmonella. Proc Natl Acad Sci U S A (2001) 4.01
Acid and base resistance in Escherichia coli and Shigella flexneri: role of rpoS and growth pH. J Bacteriol (1994) 3.81
Environmental regulation of Salmonella pathogenicity island 2 gene expression. Mol Microbiol (1999) 3.78
Stomach NO synthesis. Nature (1994) 3.70
Inducible pH homeostasis and the acid tolerance response of Salmonella typhimurium. J Bacteriol (1991) 3.58
Construction of targeted single copy lac fusions using lambda Red and FLP-mediated site-specific recombination in bacteria. Gene (2002) 3.20
The stationary-phase sigma factor sigma S (RpoS) is required for a sustained acid tolerance response in virulent Salmonella typhimurium. Mol Microbiol (1995) 3.11
Molecular basis of the magnesium deprivation response in Salmonella typhimurium: identification of PhoP-regulated genes. J Bacteriol (1996) 3.09
Transcriptional autoregulation of the Salmonella typhimurium phoPQ operon. J Bacteriol (1995) 3.03
Characterization of porin and ompR mutants of a virulent strain of Salmonella typhimurium: ompR mutants are attenuated in vivo. Infect Immun (1989) 3.00
Resistance to host antimicrobial peptides is necessary for Salmonella virulence. Proc Natl Acad Sci U S A (1992) 2.99
Proton pump inhibitors as a risk factor for Clostridium difficile diarrhoea. J Hosp Infect (2003) 2.94
Differential regulation of Salmonella typhimurium type III secreted proteins by pathogenicity island 1 (SPI-1)-encoded transcriptional activators InvF and hilA. Infect Immun (1999) 2.54
Salmonella SsrB activates a global regulon of horizontally acquired genes. Mol Microbiol (2000) 2.50
Chemical generation of nitric oxide in the mouth from the enterosalivary circulation of dietary nitrate. Nat Med (1995) 2.50
Identification of a new iron regulated locus of Salmonella typhi. Gene (1996) 2.46
Dissecting the PhoP regulatory network of Escherichia coli and Salmonella enterica. Proc Natl Acad Sci U S A (2005) 2.40
A low pH-inducible, PhoPQ-dependent acid tolerance response protects Salmonella typhimurium against inorganic acid stress. J Bacteriol (1998) 2.15
The response regulator PhoP is important for survival under conditions of macrophage-induced stress and virulence in Yersinia pestis. Infect Immun (2000) 2.10
Has the epidemiology of nosocomial candidemia changed? Infect Control Hosp Epidemiol (2004) 2.04
Salmonella typhimurium encodes a putative iron transport system within the centisome 63 pathogenicity island. Infect Immun (1999) 2.02
Activation of the bacterial sensor kinase PhoQ by acidic pH. Mol Cell (2007) 1.98
The effect of nitrate intake on nitrite formation in human saliva. Food Cosmet Toxicol (1976) 1.93
The role of fur in the acid tolerance response of Salmonella typhimurium is physiologically and genetically separable from its role in iron acquisition. J Bacteriol (1996) 1.92
Innate secretory antibodies protect against natural Salmonella typhimurium infection. J Exp Med (2006) 1.91
The PhoP/PhoQ system controls the intramacrophage type three secretion system of Salmonella enterica. Mol Microbiol (2005) 1.90
Influence of dietary nitrate on nitrite content of human saliva: possible relevance to in vivo formation of N-nitroso compounds. Food Cosmet Toxicol (1976) 1.88
The acid tolerance response of Salmonella typhimurium involves transient synthesis of key acid shock proteins. J Bacteriol (1993) 1.86
Simultaneous prevention of glutamine synthesis and high-affinity transport attenuates Salmonella typhimurium virulence. Infect Immun (1997) 1.77
Acid adaptation induces cross-protection against environmental stresses in Salmonella typhimurium. Appl Environ Microbiol (1993) 1.76
Multiple fimbrial adhesins are required for full virulence of Salmonella typhimurium in mice. Infect Immun (1998) 1.69
Direct inhibition by nitric oxide of the transcriptional ferric uptake regulation protein via nitrosylation of the iron. Proc Natl Acad Sci U S A (2002) 1.62
A non-redundant microarray of genes for two related bacteria. Nucleic Acids Res (2003) 1.53
Therapy with gastric acidity inhibitors increases the risk of acute gastroenteritis and community-acquired pneumonia in children. Pediatrics (2006) 1.51
Upper gastrointestinal (GI) pH in young, healthy men and women. Pharm Res (1990) 1.48
Comparison of the PhoPQ regulon in Escherichia coli and Salmonella typhimurium. J Mol Evol (2005) 1.41
Severe salmonella infection in patients with reduced gastric acidity. Practitioner (1985) 1.25
Antimicrobial effect of acidified nitrite on gut pathogens: importance of dietary nitrate in host defense. Antimicrob Agents Chemother (1996) 1.22
OmpR regulates the stationary-phase acid tolerance response of Salmonella enterica serovar typhimurium. J Bacteriol (2000) 1.22
Nitric oxide evokes an adaptive response to oxidative stress by arresting respiration. J Biol Chem (2008) 1.16
Repression of SPI2 transcription by nitric oxide-producing, IFNgamma-activated macrophages promotes maturation of Salmonella phagosomes. J Exp Med (2005) 1.13
Transcriptome analysis of the Mg2+-responsive PhoP regulator in Yersinia pestis. FEMS Microbiol Lett (2005) 1.11
Proteomic detection of PhoPQ- and acid-mediated repression of Salmonella motility. Proteomics (2001) 1.09
Fast cytochrome bo from Escherichia coli binds two molecules of nitric oxide at CuB. Biochemistry (1997) 1.01
Infective gastroenteritis and its relationship to reduced gastric acidity. Scand J Gastroenterol Suppl (1985) 1.01
Instability of sensory histidine kinase mRNAs in Escherichia coli. Genes Cells (2003) 0.95
The Erwinia chrysanthemi phoP-phoQ operon plays an important role in growth at low pH, virulence and bacterial survival in plant tissue. Mol Microbiol (2003) 0.94
Salmonella enterica serovar Typhimurium periplasmic superoxide dismutase SodCI is a member of the PhoPQ regulon and is induced in macrophages. J Bacteriol (2006) 0.93
Bacterial overgrowth as a consequence of reduced gastric acidity. Scand J Gastroenterol Suppl (1985) 0.92
Effects of ascorbic acid, glutathione, thiocyanate, and iodide on antimicrobial activity of acidified nitrite. Antimicrob Agents Chemother (2004) 0.92
Gastric oxidative stress and hemorrhagic ulcer in Salmonella typhimurium-infected rats. Eur J Pharmacol (2004) 0.90
The bactericidal effect and chemical reactions of acidified nitrite under conditions simulating the stomach. J Appl Microbiol (2001) 0.90
N(2)O(3) enhances the nitrosative potential of IFNgamma-primed macrophages in response to Salmonella. Immunobiology (2007) 0.89
Intragastric generation of antimicrobial nitrogen oxides from saliva--physiological and therapeutic considerations. Free Radic Biol Med (2006) 0.87
CadC has a global translational effect during acid adaptation in Salmonella enterica serovar Typhimurium. J Bacteriol (2007) 0.87
EPR study of NO complex of bd-type ubiquinol oxidase from Escherichia coli. J Biol Chem (1996) 0.85
Comparative analysis of acid resistance between susceptible and multi-antimicrobial-resistant Salmonella strains cultured under stationary-phase acid tolerance-inducing and noninducing conditions. J Food Prot (2003) 0.80
Proton-pump inhibition and gastric giardiasis: a causal or casual association? J Gastroenterol (1995) 0.79
Salmonella infections and hypochlorhydria. J Clin Gastroenterol (1980) 0.76
Reprogramming of human somatic cells to pluripotency with defined factors. Nature (2007) 30.84
Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid. Nat Genet (2004) 8.60
Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2. Nature (2006) 7.52
Peroxynitrite: biochemistry, pathophysiology and development of therapeutics. Nat Rev Drug Discov (2007) 5.65
Generation of human-induced pluripotent stem cells. Nat Protoc (2008) 4.85
Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science (2006) 4.60
Blockade of microglial activation is neuroprotective in the 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine mouse model of Parkinson disease. J Neurosci (2002) 4.38
Mechanisms of conformational change for a replicative hexameric helicase of SV40 large tumor antigen. Cell (2004) 4.14
In silico dissection of cell-type-associated patterns of gene expression in prostate cancer. Proc Natl Acad Sci U S A (2004) 3.65
Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis. Proc Natl Acad Sci U S A (2002) 3.64
Apolipoprotein A-I is a selective target for myeloperoxidase-catalyzed oxidation and functional impairment in subjects with cardiovascular disease. J Clin Invest (2004) 3.63
Measuring reactive oxygen and nitrogen species with fluorescent probes: challenges and limitations. Free Radic Biol Med (2011) 3.58
Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells. Nat Biotechnol (2011) 3.25
Dopamine-modified alpha-synuclein blocks chaperone-mediated autophagy. J Clin Invest (2008) 3.23
Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags. Proc Natl Acad Sci U S A (2002) 3.15
NADPH oxidase mediates oxidative stress in the 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine model of Parkinson's disease. Proc Natl Acad Sci U S A (2003) 2.91
Stem cell-like micro-RNA signature driven by Myc in aggressive liver cancer. Proc Natl Acad Sci U S A (2010) 2.91
DJ-1 gene deletion reveals that DJ-1 is an atypical peroxiredoxin-like peroxidase. Proc Natl Acad Sci U S A (2007) 2.87
Structure of the replicative helicase of the oncoprotein SV40 large tumour antigen. Nature (2003) 2.87
Dedifferentiation of committed epithelial cells into stem cells in vivo. Nature (2013) 2.85
T2R38 taste receptor polymorphisms underlie susceptibility to upper respiratory infection. J Clin Invest (2012) 2.66
Identification of S-nitrosylation motifs by site-specific mapping of the S-nitrosocysteine proteome in human vascular smooth muscle cells. Proc Natl Acad Sci U S A (2006) 2.58
Temporal proteome and lipidome profiles reveal hepatitis C virus-associated reprogramming of hepatocellular metabolism and bioenergetics. PLoS Pathog (2010) 2.48
Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species. PLoS One (2010) 2.41
Two calcium-dependent protein kinases, CPK4 and CPK11, regulate abscisic acid signal transduction in Arabidopsis. Plant Cell (2007) 2.40
Fully automated four-column capillary LC-MS system for maximizing throughput in proteomic analyses. Anal Chem (2007) 2.38
Gene expression patterns during swarming in Salmonella typhimurium: genes specific to surface growth and putative new motility and pathogenicity genes. Mol Microbiol (2004) 2.32
Cell biology of mating in Candida albicans. Eukaryot Cell (2003) 2.25
A newly identified role for superoxide in inflammatory pain. J Pharmacol Exp Ther (2004) 2.21
Role of alpha-synuclein carboxy-terminus on fibril formation in vitro. Biochemistry (2003) 2.18
Biological significance of nitric oxide-mediated protein modifications. Am J Physiol Lung Cell Mol Physiol (2004) 2.16
Basal and stimulated protein S-nitrosylation in multiple cell types and tissues. J Biol Chem (2002) 2.14
The Mg-chelatase H subunit of Arabidopsis antagonizes a group of WRKY transcription repressors to relieve ABA-responsive genes of inhibition. Plant Cell (2010) 2.13
Silencing of xenogeneic DNA by H-NS-facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA. Genes Dev (2007) 2.03
Global regulation by CsrA in Salmonella typhimurium. Mol Microbiol (2003) 2.02
Sensing wetness: a new role for the bacterial flagellum. EMBO J (2005) 2.01
WebArray: an online platform for microarray data analysis. BMC Bioinformatics (2005) 2.01
Regulation of Salmonella typhimurium virulence gene expression by cationic antimicrobial peptides. Mol Microbiol (2003) 2.01
Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses. Anal Chem (2003) 2.00
The inflammatory NADPH oxidase enzyme modulates motor neuron degeneration in amyotrophic lateral sclerosis mice. Proc Natl Acad Sci U S A (2006) 1.90
Identification of new flagellar genes of Salmonella enterica serovar Typhimurium. J Bacteriol (2006) 1.89
High-efficiency nanoscale liquid chromatography coupled on-line with mass spectrometry using nanoelectrospray ionization for proteomics. Anal Chem (2002) 1.88
Mutational analysis of DJ-1 in Drosophila implicates functional inactivation by oxidative damage and aging. Proc Natl Acad Sci U S A (2006) 1.88
Structural profiling of endogenous S-nitrosocysteine residues reveals unique features that accommodate diverse mechanisms for protein S-nitrosylation. Proc Natl Acad Sci U S A (2010) 1.87
Automated 20 kpsi RPLC-MS and MS/MS with chromatographic peak capacities of 1000-1500 and capabilities in proteomics and metabolomics. Anal Chem (2005) 1.87
Analysis of pools of targeted Salmonella deletion mutants identifies novel genes affecting fitness during competitive infection in mice. PLoS Pathog (2009) 1.83
Co-regulation of Salmonella enterica genes required for virulence and resistance to antimicrobial peptides by SlyA and PhoP/PhoQ. Mol Microbiol (2005) 1.80
Salmonella enterica serovar Typhi strains from which SPI7, a 134-kilobase island with genes for Vi exopolysaccharide and other functions, has been deleted. J Bacteriol (2004) 1.79
Comparative analysis of genome sequences covering the seven cronobacter species. PLoS One (2012) 1.79
Diagnosis of prostate cancer using differentially expressed genes in stroma. Cancer Res (2011) 1.78
Crystal structures of four types of human papillomavirus L1 capsid proteins: understanding the specificity of neutralizing monoclonal antibodies. J Biol Chem (2007) 1.77
Genome-wide analysis of histone H3 acetylation patterns in AML identifies PRDX2 as an epigenetically silenced tumor suppressor gene. Blood (2011) 1.73
Direct mass spectrometric analysis of intact proteins of the yeast large ribosomal subunit using capillary LC/FTICR. Proc Natl Acad Sci U S A (2002) 1.72
EVI1 induces myelodysplastic syndrome in mice. J Clin Invest (2004) 1.72
Generation of multipotent lung and airway progenitors from mouse ESCs and patient-specific cystic fibrosis iPSCs. Cell Stem Cell (2012) 1.72
DNA microarray-based typing of an atypical monophasic Salmonella enterica serovar. J Clin Microbiol (2002) 1.71
Structure of a specific alcohol-binding site defined by the odorant binding protein LUSH from Drosophila melanogaster. Nat Struct Biol (2003) 1.71
Identification of promoters bound by c-Jun/ATF2 during rapid large-scale gene activation following genotoxic stress. Mol Cell (2004) 1.67
Ultrasensitive proteomics using high-efficiency on-line micro-SPE-nanoLC-nanoESI MS and MS/MS. Anal Chem (2004) 1.66
Survey of differentially methylated promoters in prostate cancer cell lines. Neoplasia (2005) 1.63
Transcriptome of Salmonella enterica serovar Typhi within macrophages revealed through the selective capture of transcribed sequences. Proc Natl Acad Sci U S A (2006) 1.59
Alpha-pheromone-induced "shmooing" and gene regulation require white-opaque switching during Candida albicans mating. Eukaryot Cell (2003) 1.59
Functional consequences of alpha-synuclein tyrosine nitration: diminished binding to lipid vesicles and increased fibril formation. J Biol Chem (2004) 1.58
Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium. PLoS Pathog (2009) 1.58
Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation. PLoS One (2009) 1.58
Astrocytes: implications for neuroinflammatory pathogenesis of Alzheimer's disease. Curr Alzheimer Res (2011) 1.58
Crystal structure of the beta-finger domain of Prp8 reveals analogy to ribosomal proteins. Proc Natl Acad Sci U S A (2008) 1.56
Bim inhibits autophagy by recruiting Beclin 1 to microtubules. Mol Cell (2012) 1.55
A non-redundant microarray of genes for two related bacteria. Nucleic Acids Res (2003) 1.53
Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum. Proc Natl Acad Sci U S A (2012) 1.52
Microarray analysis identifies Salmonella genes belonging to the low-shear modeled microgravity regulon. Proc Natl Acad Sci U S A (2002) 1.50
In silico estimates of tissue components in surgical samples based on expression profiling data. Cancer Res (2010) 1.50
Distinct region-specific alpha-synuclein oligomers in A53T transgenic mice: implications for neurodegeneration. J Neurosci (2010) 1.49
Flagellin fusion proteins as adjuvants or vaccines induce specific immune responses. Infect Immun (2004) 1.49
Reactive oxygen and nitrogen species: weapons of neuronal destruction in models of Parkinson's disease. Antioxid Redox Signal (2005) 1.47
Reversible inhibition of alpha-synuclein fibrillization by dopaminochrome-mediated conformational alterations. J Biol Chem (2005) 1.47
Cigarette smoke exposure and hypercholesterolemia increase mitochondrial damage in cardiovascular tissues. Circulation (2002) 1.46
Low-Shear modeled microgravity alters the Salmonella enterica serovar typhimurium stress response in an RpoS-independent manner. Appl Environ Microbiol (2002) 1.45
Nitric oxide regulates mitochondrial fatty acid metabolism through reversible protein S-nitrosylation. Sci Signal (2013) 1.45
High-efficiency on-line solid-phase extraction coupling to 15-150-microm-i.d. column liquid chromatography for proteomic analysis. Anal Chem (2003) 1.44
The magnesium-chelatase H subunit binds abscisic acid and functions in abscisic acid signaling: new evidence in Arabidopsis. Plant Physiol (2009) 1.44
Cytosolic catechols inhibit alpha-synuclein aggregation and facilitate the formation of intracellular soluble oligomeric intermediates. J Neurosci (2006) 1.43
FNR is a global regulator of virulence and anaerobic metabolism in Salmonella enterica serovar Typhimurium (ATCC 14028s). J Bacteriol (2007) 1.43
Immunoglobulins against tyrosine-nitrated epitopes in coronary artery disease. Circulation (2012) 1.42
Comparison of the PhoPQ regulon in Escherichia coli and Salmonella typhimurium. J Mol Evol (2005) 1.41
Mitochondrial respiratory chain dysfunction variably increases oxidant stress in Caenorhabditis elegans. Mitochondrion (2009) 1.41
Humanized nonobese diabetic-scid IL2rgammanull mice are susceptible to lethal Salmonella Typhi infection. Proc Natl Acad Sci U S A (2010) 1.41