PubRank

Alex Bateman

Author PubWeight™ 483.48‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 2006 39.25
2 The Pfam protein families database. Nucleic Acids Res 2009 37.98
3 Pfam: clans, web tools and services. Nucleic Acids Res 2006 34.83
4 The Pfam protein families database. Nucleic Acids Res 2011 33.46
5 The Pfam protein families database. Nucleic Acids Res 2007 30.53
6 Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res 2005 25.49
7 InterPro: the integrative protein signature database. Nucleic Acids Res 2008 25.07
8 The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res 2003 24.72
9 Rfam: an RNA family database. Nucleic Acids Res 2003 22.93
10 Pfam: the protein families database. Nucleic Acids Res 2013 22.48
11 InterPro, progress and status in 2005. Nucleic Acids Res 2005 17.53
12 InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res 2011 13.45
13 New developments in the InterPro database. Nucleic Acids Res 2007 12.49
14 Rfam: updates to the RNA families database. Nucleic Acids Res 2008 11.61
15 QuickTree: building huge Neighbour-Joining trees of protein sequences. Bioinformatics 2002 9.36
16 iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions. Bioinformatics 2004 7.02
17 Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Res 2010 6.58
18 Rfam 11.0: 10 years of RNA families. Nucleic Acids Res 2012 6.14
19 Enhanced protein domain discovery by using language modeling techniques from speech recognition. Proc Natl Acad Sci U S A 2003 6.01
20 MEROPS: the peptidase database. Nucleic Acids Res 2009 5.33
21 MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Res 2011 4.90
22 The RNA WikiProject: community annotation of RNA families. RNA 2008 4.83
23 Predicting active site residue annotations in the Pfam database. BMC Bioinformatics 2007 3.95
24 Visualizing profile-profile alignment: pairwise HMM logos. Bioinformatics 2005 3.52
25 MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Res 2013 3.28
26 Pfam 10 years on: 10,000 families and still growing. Brief Bioinform 2008 2.79
27 InterPro: an integrated documentation resource for protein families, domains and functional sites. Brief Bioinform 2002 2.66
28 Large-scale screening for novel low-affinity extracellular protein interactions. Genome Res 2008 2.62
29 The PASTA domain: a beta-lactam-binding domain. Trends Biochem Sci 2002 2.40
30 Identifying protein domains with the Pfam database. Curr Protoc Bioinformatics 2008 2.24
31 The Hotdog fold: wrapping up a superfamily of thioesterases and dehydratases. BMC Bioinformatics 2004 2.16
32 The systematic functional analysis of Plasmodium protein kinases identifies essential regulators of mosquito transmission. Cell Host Microbe 2010 2.13
33 Metazoan Scc4 homologs link sister chromatid cohesion to cell and axon migration guidance. PLoS Biol 2006 2.08
34 The tify family previously known as ZIM. Trends Plant Sci 2007 2.07
35 Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks. Mol Cell 2012 2.02
36 Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res 2010 1.97
37 Cloud computing. Bioinformatics 2009 1.94
38 Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions. Nucleic Acids Res 2013 1.83
39 Enhanced protein domain discovery using taxonomy. BMC Bioinformatics 2004 1.81
40 RNAcentral: A vision for an international database of RNA sequences. RNA 2011 1.73
41 Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Genome Biol 2013 1.62
42 Alternative splicing of intrinsically disordered regions and rewiring of protein interactions. Curr Opin Struct Biol 2013 1.61
43 AntiFam: a tool to help identify spurious ORFs in protein annotation. Database (Oxford) 2012 1.60
44 Making your database available through Wikipedia: the pros and cons. Nucleic Acids Res 2011 1.53
45 Protein interactions in human genetic diseases. Genome Biol 2008 1.52
46 Biocurators and biocuration: surveying the 21st century challenges. Database (Oxford) 2012 1.46
47 The ENTH domain. FEBS Lett 2002 1.45
48 The evolution of protein domain families. Biochem Soc Trans 2009 1.44
49 Ten simple rules for editing Wikipedia. PLoS Comput Biol 2010 1.36
50 New knowledge from old: in silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003 1.33
51 Quantifying the mechanisms of domain gain in animal proteins. Genome Biol 2010 1.32
52 Dosage sensitivity shapes the evolution of copy-number varied regions. PLoS One 2010 1.30
53 The challenge of increasing Pfam coverage of the human proteome. Database (Oxford) 2013 1.30
54 TreeFam v9: a new website, more species and orthology-on-the-fly. Nucleic Acids Res 2013 1.29
55 Asparagine peptide lyases: a seventh catalytic type of proteolytic enzymes. J Biol Chem 2011 1.26
56 A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium. Nucleic Acids Res 2013 1.26
57 iPfam: a database of protein family and domain interactions found in the Protein Data Bank. Nucleic Acids Res 2013 1.26
58 Towards BioDBcore: a community-defined information specification for biological databases. Database (Oxford) 2011 1.24
59 The COMBREX project: design, methodology, and initial results. PLoS Biol 2013 1.24
60 Membrane-bound progesterone receptors contain a cytochrome b5-like ligand-binding domain. Genome Biol 2002 1.20
61 Reuse of structural domain-domain interactions in protein networks. BMC Bioinformatics 2007 1.19
62 Identifying protein domains with the Pfam database. Curr Protoc Bioinformatics 2003 1.18
63 Curators of the world unite: the International Society of Biocuration. Bioinformatics 2010 1.16
64 Databases, data tombs and dust in the wind. Bioinformatics 2008 1.12
65 The BON domain: a putative membrane-binding domain. Trends Biochem Sci 2003 1.10
66 RNIE: genome-wide prediction of bacterial intrinsic terminators. Nucleic Acids Res 2011 1.09
67 The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs. Bioinformatics 2002 1.07
68 The PepSY domain: a regulator of peptidase activity in the microbial environment? Trends Biochem Sci 2004 1.01
69 Bioimage informatics: a new category in Bioinformatics. Bioinformatics 2012 0.96
70 Novel protein domains and motifs in the marine planctomycete Rhodopirellula baltica. FEMS Microbiol Lett 2004 0.96
71 The structure of Jann_2411 (DUF1470) from Jannaschia sp. at 1.45 Å resolution reveals a new fold (the ABATE domain) and suggests its possible role as a transcription regulator. Acta Crystallogr Sect F Struct Biol Cryst Commun 2009 0.94
72 SnoPatrol: how many snoRNA genes are there? J Biol 2010 0.93
73 Bioinformatics for next generation sequencing. Bioinformatics 2009 0.93
74 Time to underpin Wikipedia wisdom. Nature 2010 0.90
75 Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference. Database (Oxford) 2012 0.89
76 Pepsin homologues in bacteria. BMC Genomics 2009 0.86
77 The characterisation of three types of genes that overlie copy number variable regions. PLoS One 2011 0.86
78 Structural genomics meets computational biology. Bioinformatics 2006 0.85
79 An introduction to hidden Markov models. Curr Protoc Bioinformatics 2007 0.85
80 Bacterial pleckstrin homology domains: a prokaryotic origin for the PH domain. J Mol Biol 2009 0.85
81 Filling out the structural map of the NTF2-like superfamily. BMC Bioinformatics 2013 0.85
82 Using the MEROPS Database for Proteolytic Enzymes and Their Inhibitors and Substrates. Curr Protoc Bioinformatics 2014 0.85
83 Ten simple rules for chairing a scientific session. PLoS Comput Biol 2009 0.82
84 A comparison of Pfam and MEROPS: two databases, one comprehensive, and one specialised. BMC Bioinformatics 2003 0.81
85 The YARHG domain: an extracellular domain in search of a function. PLoS One 2012 0.79
86 The rise and fall of supervised machine learning techniques. Bioinformatics 2011 0.79
87 Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis. BMC Bioinformatics 2014 0.76
88 Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila. BMC Bioinformatics 2013 0.76
89 LUD, a new protein domain associated with lactate utilization. BMC Bioinformatics 2013 0.76
90 The structure of pyogenecin immunity protein, a novel bacteriocin-like immunity protein from Streptococcus pyogenes. BMC Struct Biol 2009 0.75
91 The SHOCT domain: a widespread domain under-represented in model organisms. PLoS One 2013 0.75
92 DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration. Database (Oxford) 2013 0.75