Impact of genetic background on allele selection in a highly mutable Candida albicans gene, PNG2.

PubWeight™: 0.83‹?›

🔗 View Article (PMC 2834760)

Published in PLoS One on March 09, 2010

Authors

Ningxin Zhang1, Richard D Cannon, Barbara R Holland, Mark L Patchett, Jan Schmid

Author Affiliations

1: Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand.

Articles cited by this

PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci (1997) 45.07

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol Biol Evol (2000) 13.01

Roles of N-linked glycans in the endoplasmic reticulum. Annu Rev Biochem (2004) 8.80

A genome-wide view of the spectrum of spontaneous mutations in yeast. Proc Natl Acad Sci U S A (2008) 5.90

Yeast-enhanced green fluorescent protein (yEGFP): a reporter of gene expression in Candida albicans. Microbiology (1997) 5.00

Intragenic tandem repeats generate functional variability. Nat Genet (2005) 4.02

The ALS gene family of Candida albicans. Trends Microbiol (2001) 3.93

Tcoffee@igs: A web server for computing, evaluating and combining multiple sequence alignments. Nucleic Acids Res (2003) 3.35

A human-curated annotation of the Candida albicans genome. PLoS Genet (2005) 3.04

Usefulness of multilocus sequence typing for characterization of clinical isolates of Candida albicans. J Clin Microbiol (2002) 3.01

Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation. Annu Rev Genet (2006) 2.86

Common strategies for antigenic variation by bacterial, fungal and protozoan pathogens. Nat Rev Microbiol (2009) 2.54

Antigenic variation in trypanosomes: enhanced phenotypic variation in a eukaryotic parasite. Adv Parasitol (2001) 2.45

Molecular phylogenetics of Candida albicans. Eukaryot Cell (2007) 2.41

Genome-wide expression profiling of the response to azole, polyene, echinocandin, and pyrimidine antifungal agents in Candida albicans. Antimicrob Agents Chemother (2005) 2.35

Collaborative consensus for optimized multilocus sequence typing of Candida albicans. J Clin Microbiol (2003) 2.17

Candida albicans ALS1: domains related to a Saccharomyces cerevisiae sexual agglutinin separated by a repeating motif. Mol Microbiol (1995) 2.08

Transcriptional profiling in Candida albicans reveals new adaptive responses to extracellular pH and functions for Rim101p. Mol Microbiol (2004) 2.03

Origins of variation in the fungal cell surface. Nat Rev Microbiol (2004) 2.01

Adaptation of Haemophilus influenzae to acquired and innate humoral immunity based on phase variation of lipopolysaccharide. Mol Microbiol (1998) 1.96

Genome-wide fitness test and mechanism-of-action studies of inhibitory compounds in Candida albicans. PLoS Pathog (2007) 1.74

Functional specificity of Candida albicans Als3p proteins and clade specificity of ALS3 alleles discriminated by the number of copies of the tandem repeat sequence in the central domain. Microbiology (2005) 1.67

Threonine-rich repeats increase fibronectin binding in the Candida albicans adhesin Als5p. Eukaryot Cell (2006) 1.65

Multiple determinants direct the orientation of signal-anchor proteins: the topogenic role of the hydrophobic signal domain. J Cell Biol (1997) 1.64

The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information. Nucleic Acids Res (2005) 1.61

Towards understanding the evolution of the human commensal yeast Candida albicans. Microbiology (1999) 1.49

A parasitic phase-specific adhesin of Coccidioides immitis contributes to the virulence of this respiratory Fungal pathogen. Infect Immun (2002) 1.43

The cell wall-associated glyceraldehyde-3-phosphate dehydrogenase of Candida albicans is also a fibronectin and laminin binding protein. Infect Immun (1998) 1.42

Property differences among the four major Candida albicans strain clades. Eukaryot Cell (2009) 1.36

Evidence for a general-purpose genotype in Candida albicans, highly prevalent in multiple geographical regions, patient types and types of infection. Microbiology (1999) 1.29

Sixty alleles of the ALS7 open reading frame in Candida albicans: ALS7 is a hypermutable contingency locus. Genome Res (2003) 1.23

Heterozygosity and functional allelic variation in the Candida albicans efflux pump genes CDR1 and CDR2. Mol Microbiol (2006) 1.16

Analysis of ALS5 and ALS6 allelic variability in a geographically diverse collection of Candida albicans isolates. Fungal Genet Biol (2007) 1.16

Distinct domains of the Candida albicans adhesin Eap1p mediate cell-cell and cell-substrate interactions. Microbiology (2008) 1.12

Expression of transglutaminase substrate activity on Candida albicans germ tubes through a coiled, disulfide-bonded N-terminal domain of Hwp1 requires C-terminal glycosylphosphatidylinositol modification. J Biol Chem (2004) 1.06

The human commensal yeast, Candida albicans, has an ancient origin. Fungal Genet Biol (2005) 0.99

A brief review of short tandem repeat mutation. Genomics Proteomics Bioinformatics (2007) 0.98

Probing the environment of signal-anchor sequences during topogenesis in the endoplasmic reticulum. Biochemistry (2005) 0.96

Characterisation of peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A and its N-glycans. Eur J Biochem (1998) 0.94

Genome-wide expression profiling of the response to ciclopirox olamine in Candida albicans. J Antimicrob Chemother (2005) 0.91

Expression cloning of a fungal proline-rich glycoprotein specific to the biotrophic interface formed in the Colletotrichum-bean interaction. Plant J (1998) 0.90

Increased number of glutamine repeats in the C-terminal of Candida albicans Rlm1p enhances the resistance to stress agents. Antonie Van Leeuwenhoek (2009) 0.88

Molecular cloning, primary structure, and properties of a new glycoamidase from the fungus Aspergillus tubigensis. J Biol Chem (1997) 0.86

Comparison of cell wall localization among Pir family proteins and functional dissection of the region required for cell wall binding and bud scar recruitment of Pir1p. Eukaryot Cell (2005) 0.86

A DNA polymorphism specific to Candida albicans strains exceptionally successful as human pathogens. Gene (2001) 0.85

Distribution of mutations distinguishing the most prevalent disease-causing Candida albicans genotype from other genotypes. Infect Genet Evol (2009) 0.83

Characterization of two Candida albicans surface mannoprotein adhesins that bind immobilized saliva components. Med Mycol (2005) 0.80

Articles by these authors

Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature. Nat Prod Rep (2013) 5.38

Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci. PLoS Genet (2013) 1.81

Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences. BMC Bioinformatics (2006) 1.76

Using consensus networks to visualize contradictory evidence for species phylogeny. Mol Biol Evol (2004) 1.65

Deciphering past human population movements in Oceania: provably optimal trees of 127 mtDNA genomes. Mol Biol Evol (2006) 1.49

Characterization of three classes of membrane proteins involved in fungal azole resistance by functional hyperexpression in Saccharomyces cerevisiae. Eukaryot Cell (2007) 1.35

ABC transporter Cdr1p contributes more than Cdr2p does to fluconazole efflux in fluconazole-resistant Candida albicans clinical isolates. Antimicrob Agents Chemother (2008) 1.30

Architecture of a single membrane spanning cytochrome P450 suggests constraints that orient the catalytic domain relative to a bilayer. Proc Natl Acad Sci U S A (2014) 1.23

Sixty alleles of the ALS7 open reading frame in Candida albicans: ALS7 is a hypermutable contingency locus. Genome Res (2003) 1.23

Antifungal drug resistance of oral fungi. Odontology (2010) 1.21

Cysteine S-glycosylation, a new post-translational modification found in glycopeptide bacteriocins. FEBS Lett (2011) 1.19

Heterozygosity and functional allelic variation in the Candida albicans efflux pump genes CDR1 and CDR2. Mol Microbiol (2006) 1.16

Simplified extraction of ergovaline and peramine for analysis of tissue distribution in endophyte-infected grass tillers. J Agric Food Chem (2002) 1.16

Untangling long branches: identifying conflicting phylogenetic signals using spectral analysis, neighbor-net, and consensus networks. Syst Biol (2005) 1.15

Regulated overexpression of CDR1 in Candida albicans confers multidrug resistance. J Antimicrob Chemother (2004) 1.08

Identification of Nile red as a fluorescent substrate of the Candida albicans ATP-binding cassette transporters Cdr1p and Cdr2p and the major facilitator superfamily transporter Mdr1p. Anal Biochem (2009) 1.08

Candida glabrata ATP-binding cassette transporters Cdr1p and Pdh1p expressed in a Saccharomyces cerevisiae strain deficient in membrane transporters show phosphorylation-dependent pumping properties. J Biol Chem (2002) 1.05

Abc1p is a multidrug efflux transporter that tips the balance in favor of innate azole resistance in Candida krusei. Antimicrob Agents Chemother (2008) 1.01

Distribution of the fungal endophyte Neotyphodium lolii is not a major determinant of the distribution of fungal alkaloids in Lolium perenne plants. Phytochemistry (2005) 1.01

Identification of two proteins induced by exposure of the pathogenic fungus Candida glabrata to fluconazole. J Chromatogr B Analyt Technol Biomed Life Sci (2002) 1.00

Surface-active fungicidal D-peptide inhibitors of the plasma membrane proton pump that block azole resistance. Antimicrob Agents Chemother (2005) 1.00

Phosphorylation of candida glabrata ATP-binding cassette transporter Cdr1p regulates drug efflux activity and ATPase stability. J Biol Chem (2004) 0.99

Tyrosine latching of a regulatory gate affords allosteric control of aromatic amino acid biosynthesis. J Biol Chem (2011) 0.99

Fungal PDR transporters: Phylogeny, topology, motifs and function. Fungal Genet Biol (2009) 0.98

The problem of rooting rapid radiations. Mol Biol Evol (2007) 0.97

Substrate ambiguity and crystal structure of Pyrococcus furiosus 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase: an ancestral 3-deoxyald-2-ulosonate-phosphate synthase? Biochemistry (2005) 0.96

Structural, dynamic, and chemical characterization of a novel S-glycosylated bacteriocin. Biochemistry (2011) 0.94

Genetic relationship between human and animal isolates of Candida albicans. J Clin Microbiol (2005) 0.94

The metabolic basis of Candida albicans morphogenesis and quorum sensing. Fungal Genet Biol (2011) 0.93

Characterization of a recombinant type II 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase from Helicobacter pylori. Biochem J (2005) 0.91

Specific interactions between the Candida albicans ABC transporter Cdr1p ectodomain and a D-octapeptide derivative inhibitor. Mol Microbiol (2012) 0.91

Expression, purification, and characterization of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase from Pyrococcus furiosus. Protein Expr Purif (2004) 0.91

The monoamine oxidase A inhibitor clorgyline is a broad-spectrum inhibitor of fungal ABC and MFS transporter efflux pump activities which reverses the azole resistance of Candida albicans and Candida glabrata clinical isolates. Antimicrob Agents Chemother (2011) 0.90

Is the general time-reversible model bad for molecular phylogenetics? Syst Biol (2012) 0.90

Chimeras of Candida albicans Cdr1p and Cdr2p reveal features of pleiotropic drug resistance transporter structure and function. Mol Microbiol (2011) 0.89

Use of denaturing gradient gel electrophoresis for the identification of mixed oral yeasts in human saliva. J Med Microbiol (2012) 0.89

Missing data and influential sites: choice of sites for phylogenetic analysis can be as important as taxon sampling and model choice. Genome Biol Evol (2013) 0.88

Biogeography of circum-Antarctic springtails. Mol Phylogenet Evol (2010) 0.88

Characterization of the Saccharomyces cerevisiae sec6-4 mutation and tools to create S. cerevisiae strains containing the sec6-4 allele. Gene (2005) 0.88

A D-octapeptide drug efflux pump inhibitor acts synergistically with azoles in a murine oral candidiasis infection model. FEMS Microbiol Lett (2012) 0.87

Functional analysis of fungal drug efflux transporters by heterologous expression in Saccharomyces cerevisiae. Jpn J Infect Dis (2005) 0.87

Insight into pleiotropic drug resistance ATP-binding cassette pump drug transport through mutagenesis of Cdr1p transmembrane domains. J Biol Chem (2013) 0.87

Using secretion to solve a solubility problem: high-yield expression in Escherichia coli and purification of the bacterial glycoamidase PNGase F. Protein Expr Purif (2002) 0.86

Reconstitution of high-level micafungin resistance detected in a clinical isolate of Candida glabrata identifies functional homozygosity in glucan synthase gene expression. J Antimicrob Chemother (2012) 0.86

Effects of the fungal endophyte, Neotyphodium lolii, on net photosynthesis and growth rates of perennial ryegrass (Lolium perenne) are independent of In Planta endophyte concentration. Ann Bot (2006) 0.86

Supermatrices, supertrees and serendipitous scaffolding: inferring a well-resolved, genus-level phylogeny of Styphelioideae (Ericaceae) despite missing data. Mol Phylogenet Evol (2011) 0.83

Distribution of mutations distinguishing the most prevalent disease-causing Candida albicans genotype from other genotypes. Infect Genet Evol (2009) 0.83

The identification of concerted convergence in insect heads corroborates palaeoptera. Syst Biol (2012) 0.82

Antifungal saponins from Paris polyphylla Smith. Planta Med (2008) 0.82

High levels of a fungal superoxide dismutase and increased concentration of a PR-10 plant protein in associations between the endophytic fungus Neotyphodium lolii and ryegrass. Mol Plant Microbe Interact (2011) 0.82

Gaps: an elusive source of phylogenetic information. Syst Biol (2012) 0.82

Candida albicans binds to saliva proteins selectively adsorbed to silicone. Oral Surg Oral Med Oral Pathol Oral Radiol Endod (2006) 0.82

LineageSpecificSeqgen: generating sequence data with lineage-specific variation in the proportion of variable sites. BMC Evol Biol (2008) 0.81

Drug resistance is conferred on the model yeast Saccharomyces cerevisiae by expression of full-length melanoma-associated human ATP-binding cassette transporter ABCB5. Mol Pharm (2014) 0.81

Estimating the relative roles of recombination and point mutation in the generation of single locus variants in Campylobacter jejuni and Campylobacter coli. J Mol Evol (2012) 0.80

N-acetylglucosamine increases symptoms and fungal burden in a murine model of oral candidiasis. Med Mycol (2011) 0.80

Conflict amongst chloroplast DNA sequences obscures the phylogeny of a group of Asplenium ferns. Mol Phylogenet Evol (2008) 0.80

Esthetic comparison of white-spot lesion treatment modalities using spectrometry and fluorescence. Angle Orthod (2013) 0.80

Optimal alphabets for an RNA world. Proc Biol Sci (2003) 0.80

Antibiotic sensitivity profiles do not reliably distinguish relapsing or persisting infections from reinfections in cats with chronic renal failure and multiple diagnoses of Escherichia coli urinary tract infection. J Vet Intern Med (2006) 0.80

The metabolic response of Candida albicans to farnesol under hyphae-inducing conditions. FEMS Yeast Res (2012) 0.79

Reconciling molecules and morphology: molecular systematics and biogeography of Neotropical blennies (Acanthemblemaria). Mol Phylogenet Evol (2011) 0.79

Faster exact maximum parsimony search with XMP. Bioinformatics (2011) 0.79

Novel distances for dollo data. Syst Biol (2012) 0.79

Metabolic response of Candida albicans to phenylethyl alcohol under hyphae-inducing conditions. PLoS One (2013) 0.78

Phylogenetic tree reconstruction accuracy and model fit when proportions of variable sites change across the tree. Syst Biol (2010) 0.78

Genomic pathways to antifungal discovery. Curr Drug Targets Infect Disord (2002) 0.78

Transformation of the ryegrass endophyte Neotyphodium lolii can alter its in planta mycelial morphology. Mycol Res (2006) 0.77

Detection of Candida albicans mRNA in archival histopathology samples by reverse transcription-PCR. J Clin Microbiol (2004) 0.77

Nucleotide allosteric regulation of the glutamate dehydrogenases of Teladorsagia circumcincta and Haemonchus contortus. Comp Biochem Physiol B Biochem Mol Biol (2011) 0.77

[ABC transporters of pathogenic fungi: recent advances in functional analyses]. Nihon Ishinkin Gakkai Zasshi (2005) 0.76

The emergence of predators in early life: there was no Garden of Eden. PLoS One (2009) 0.76

Small, synthetic, GC-rich mRNA stem-loop modules 5' proximal to the AUG start-codon predictably tune gene expression in yeast. Microb Cell Fact (2013) 0.76

Campylobacter jejuni colonization and population structure in urban populations of ducks and starlings in New Zealand. Microbiologyopen (2013) 0.76

Production from dairy cows of semi-industrial quantities of milk-protein concentrate (MPC) containing efficacious anti-Candida albicans IgA antibodies. J Dairy Res (2007) 0.76

Reconstructing past changes in locus-specific recombination rates. BMC Genet (2013) 0.76

iROLL: does 3-D radioguided occult lesion localization improve surgical management in early-stage breast cancer? Eur J Nucl Med Mol Imaging (2015) 0.76

Testing the effect of metabolic rate on DNA variability at the intra-specific level. PLoS One (2010) 0.75

Heterologous expression of Candida albicans Pma1p in Saccharomyces cerevisiae. FEMS Yeast Res (2013) 0.75

A tensorial approach to the inversion of group-based phylogenetic models. BMC Evol Biol (2014) 0.75

Amino acid residues affecting drug pump function in Candida albicans--C. albicans drug pump function. Nihon Ishinkin Gakkai Zasshi (2006) 0.75

Expression, Purification, and Characterisation of Dehydroquinate Synthase from Pyrococcus furiosus. Enzyme Res (2011) 0.75

Response of human periodontal ligament cells to baicalin. J Periodontol (2014) 0.75

Upper bounds on maximum likelihood for phylogenetic trees. Bioinformatics (2003) 0.75

Yeast colonization of voice prostheses: pilot study investigating effect of a bovine milk product containing anti-Candida albicans immunoglobulin A antibodies on yeast colonization and valve leakage. Ann Otol Rhinol Laryngol (2012) 0.75

Antifungal drug susceptibilities of commensal Candida isolates. N Z Dent J (2002) 0.75

Synthesis of the antimicrobial S-linked glycopeptide, glycocin F. Chemistry (2015) 0.75

Arabinose 5-phosphate analogues as mechanistic probes for Neisseria meningitidis 3-deoxy-D-manno-octulosonate 8-phosphate synthase. Bioorg Med Chem (2008) 0.75

Use of a yeast-based membrane protein expression technology to overexpress drug resistance efflux pumps. Methods Mol Biol (2010) 0.75

Erratum: Newly identified motifs in Candida albicans Cdr1 protein nucleotide binding domains are pleiotropic drug resistance subfamily-specific and functionally asymmetric. Sci Rep (2016) 0.75

Improving the effectiveness of chlorhexidine. N Z Dent J (2006) 0.75