Published in Genetics on April 20, 2010
Extension of the bayesian alphabet for genomic selection. BMC Bioinformatics (2011) 5.52
Whole-genome regression and prediction methods applied to plant and animal breeding. Genetics (2012) 4.13
Using whole-genome sequence data to predict quantitative trait phenotypes in Drosophila melanogaster. PLoS Genet (2012) 2.90
The QTN program and the alleles that matter for evolution: all that's gold does not glitter. Evolution (2011) 2.23
Prediction of complex human traits using the genomic best linear unbiased predictor. PLoS Genet (2013) 2.16
Best linear unbiased prediction of genomic breeding values using a trait-specific marker-derived relationship matrix. PLoS One (2010) 2.08
Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking. Genetics (2012) 2.00
Different models of genetic variation and their effect on genomic evaluation. Genet Sel Evol (2011) 1.98
Genomic BLUP decoded: a look into the black box of genomic prediction. Genetics (2013) 1.71
The importance of information on relatives for the prediction of genomic breeding values and the implications for the makeup of reference data sets in livestock breeding schemes. Genet Sel Evol (2012) 1.66
Accounting for genetic architecture improves sequence based genomic prediction for a Drosophila fitness trait. PLoS One (2015) 1.57
Imputation of missing genotypes from sparse to high density using long-range phasing. Genetics (2011) 1.57
Breeding value prediction for production traits in layer chickens using pedigree or genomic relationships in a reduced animal model. Genet Sel Evol (2011) 1.55
Multiple-trait genomic selection methods increase genetic value prediction accuracy. Genetics (2012) 1.53
The Impact of Genetic Relationship and Linkage Disequilibrium on Genomic Selection. PLoS One (2015) 1.48
A Bayesian antedependence model for whole genome prediction. Genetics (2011) 1.45
The effect of linkage disequilibrium and family relationships on the reliability of genomic prediction. Genetics (2012) 1.43
Genome-wide prediction of traits with different genetic architecture through efficient variable selection. Genetics (2013) 1.39
Genomic selection requires genomic control of inbreeding. Genet Sel Evol (2012) 1.38
Genomic selection and complex trait prediction using a fast EM algorithm applied to genome-wide markers. BMC Bioinformatics (2010) 1.27
Genomic predictability of interconnected biparental maize populations. Genetics (2013) 1.27
Improving the accuracy of whole genome prediction for complex traits using the results of genome wide association studies. PLoS One (2014) 1.20
Impacts of both reference population size and inclusion of a residual polygenic effect on the accuracy of genomic prediction. Genet Sel Evol (2011) 1.19
Persistence of accuracy of genomic estimated breeding values over generations in layer chickens. Genet Sel Evol (2011) 1.19
Accuracy of direct genomic values in Holstein bulls and cows using subsets of SNP markers. Genet Sel Evol (2010) 1.19
The effects of demography and long-term selection on the accuracy of genomic prediction with sequence data. Genetics (2014) 1.16
Back to basics for Bayesian model building in genomic selection. Genetics (2012) 1.15
Genomic selection in sugar beet breeding populations. BMC Genet (2013) 1.12
Genomic prediction of northern corn leaf blight resistance in maize with combined or separated training sets for heterotic groups. G3 (Bethesda) (2013) 1.10
Bayesian methods for estimating GEBVs of threshold traits. Heredity (Edinb) (2012) 1.10
Estimation of quantitative trait locus effects with epistasis by variational Bayes algorithms. Genetics (2011) 1.07
Improved precision of QTL mapping using a nonlinear Bayesian method in a multi-breed population leads to greater accuracy of across-breed genomic predictions. Genet Sel Evol (2015) 1.06
Dissecting the genetic architecture of frost tolerance in Central European winter wheat. J Exp Bot (2013) 1.05
Genome-wide association study identifies major loci for carcass weight on BTA14 in Hanwoo (Korean cattle). PLoS One (2013) 1.03
Genome properties and prospects of genomic prediction of hybrid performance in a breeding program of maize. Genetics (2014) 1.02
Comparison of analyses of the QTLMAS XIV common dataset. I: genomic selection. BMC Proc (2011) 1.02
Inexpensive Computation of the Inverse of the Genomic Relationship Matrix in Populations with Small Effective Population Size. Genetics (2015) 1.02
Comparison of Bayesian models to estimate direct genomic values in multi-breed commercial beef cattle. Genet Sel Evol (2015) 1.01
Accuracy of pedigree and genomic predictions of carcass and novel meat quality traits in multi-breed sheep data assessed by cross-validation. Genet Sel Evol (2012) 1.01
Long-term response to genomic selection: effects of estimation method and reference population structure for different genetic architectures. Genet Sel Evol (2012) 1.01
Empirical and deterministic accuracies of across-population genomic prediction. Genet Sel Evol (2015) 1.01
Genome partitioning of genetic variation for milk production and composition traits in holstein cattle. Front Genet (2011) 1.00
Kernel-based whole-genome prediction of complex traits: a review. Front Genet (2014) 0.99
Application of genomics tools to animal breeding. Curr Genomics (2012) 0.98
Genome-wide association studies and prediction of 17 traits related to phenology, biomass and cell wall composition in the energy grass Miscanthus sinensis. New Phytol (2013) 0.97
Parametric and nonparametric statistical methods for genomic selection of traits with additive and epistatic genetic architectures. G3 (Bethesda) (2014) 0.97
Using the Pareto principle in genome-wide breeding value estimation. Genet Sel Evol (2011) 0.95
A fast EM algorithm for BayesA-like prediction of genomic breeding values. PLoS One (2012) 0.95
Genome-enabled predictions for binomial traits in sugar beet populations. BMC Genet (2014) 0.94
The accuracy of prediction of genomic selection in elite hybrid rye populations surpasses the accuracy of marker-assisted selection and is equally augmented by multiple field evaluation locations and test years. BMC Genomics (2014) 0.93
Linkage disequilibrium and inbreeding estimation in Spanish Churra sheep. BMC Genet (2012) 0.93
Accuracy of genomic predictions in Bos indicus (Nellore) cattle. Genet Sel Evol (2014) 0.92
Comparison of single-trait and multiple-trait genomic prediction models. BMC Genet (2014) 0.92
Genomic prediction using imputed whole-genome sequence data in Holstein Friesian cattle. Genet Sel Evol (2015) 0.90
A comparison of statistical methods for genomic selection in a mice population. BMC Genet (2012) 0.89
Changes in variance explained by top SNP windows over generations for three traits in broiler chicken. Front Genet (2014) 0.88
Impact of QTL properties on the accuracy of multi-breed genomic prediction. Genet Sel Evol (2015) 0.87
Genomic prediction for tuberculosis resistance in dairy cattle. PLoS One (2014) 0.87
Genome-wide prediction of three important traits in bread wheat. Mol Breed (2014) 0.87
Genetic control of canine leishmaniasis: genome-wide association study and genomic selection analysis. PLoS One (2012) 0.86
Efficiency of genomic selection in an established commercial layer breeding program. Genet Sel Evol (2013) 0.86
Genomic prediction of host resistance to sea lice in farmed Atlantic salmon populations. Genet Sel Evol (2016) 0.86
Economic aspects of implementing genomic evaluations in a pig sire line breeding scheme. Genet Sel Evol (2013) 0.85
Enlarging a training set for genomic selection by imputation of un-genotyped animals in populations of varying genetic architecture. Genet Sel Evol (2013) 0.85
A comparison of genomic selection models across time in interior spruce (Picea engelmannii × glauca) using unordered SNP imputation methods. Heredity (Edinb) (2015) 0.85
A function accounting for training set size and marker density to model the average accuracy of genomic prediction. PLoS One (2013) 0.84
Genomic selection across multiple breeding cycles in applied bread wheat breeding. Theor Appl Genet (2016) 0.84
Accuracy of whole-genome prediction using a genetic architecture-enhanced variance-covariance matrix. G3 (Bethesda) (2015) 0.84
An Equation to Predict the Accuracy of Genomic Values by Combining Data from Multiple Traits, Populations, or Environments. Genetics (2015) 0.84
Integrating Crop Growth Models with Whole Genome Prediction through Approximate Bayesian Computation. PLoS One (2015) 0.84
Genetic Architecture of Resistance to Stripe Rust in a Global Winter Wheat Germplasm Collection. G3 (Bethesda) (2016) 0.83
Improving the computational efficiency of fully Bayes inference and assessing the effect of misspecification of hyperparameters in whole-genome prediction models. Genet Sel Evol (2015) 0.83
Application of high-dimensional feature selection: evaluation for genomic prediction in man. Sci Rep (2015) 0.83
QTL fine mapping with Bayes C(π): a simulation study. Genet Sel Evol (2013) 0.83
Genomic prediction based on data from three layer lines: a comparison between linear methods. Genet Sel Evol (2014) 0.83
Assessing the impact of genomic selection against hip dysplasia in the Labrador Retriever dog. J Anim Breed Genet (2013) 0.82
Impact of genotype imputation on the performance of GBLUP and Bayesian methods for genomic prediction. PLoS One (2014) 0.82
Genomic prediction of traits related to canine hip dysplasia. Front Genet (2015) 0.82
Genomic Prediction of Testcross Performance in Canola (Brassica napus). PLoS One (2016) 0.82
Genetic improvement of Pacific white shrimp [Penaeus (Litopenaeus) vannamei]: perspectives for genomic selection. Front Genet (2015) 0.81
Within- and across-breed genomic prediction using whole-genome sequence and single nucleotide polymorphism panels. Genet Sel Evol (2016) 0.81
Whole genome association study identifies regions of the bovine genome and biological pathways involved in carcass trait performance in Holstein-Friesian cattle. BMC Genomics (2014) 0.81
Accurate estimation of effective population size in the korean dairy cattle based on linkage disequilibrium corrected by genomic relationship matrix. Asian-Australas J Anim Sci (2013) 0.81
Effects of number of training generations on genomic prediction for various traits in a layer chicken population. Genet Sel Evol (2016) 0.81
Mixture models detect large effect QTL better than GBLUP and result in more accurate and persistent predictions. J Anim Sci Biotechnol (2016) 0.81
GPOPSIM: a simulation tool for whole-genome genetic data. BMC Genet (2015) 0.81
Selection in action: dissecting the molecular underpinnings of the increasing muscle mass of Belgian Blue Cattle. BMC Genomics (2014) 0.80
Across population genomic prediction scenarios in which Bayesian variable selection outperforms GBLUP. BMC Genet (2015) 0.79
Effectiveness of shrinkage and variable selection methods for the prediction of complex human traits using data from distantly related individuals. Ann Hum Genet (2015) 0.79
Quantitative trait loci mapping for canine hip dysplasia and its related traits in UK Labrador Retrievers. BMC Genomics (2014) 0.79
Multiple Linkage Disequilibrium Mapping Methods to Validate Additive Quantitative Trait Loci in Korean Native Cattle (Hanwoo). Asian-Australas J Anim Sci (2015) 0.79
Comparison of Genomic Selection Models to Predict Flowering Time and Spike Grain Number in Two Hexaploid Wheat Doubled Haploid Populations. G3 (Bethesda) (2015) 0.79
Genomic-Based Optimum Contribution in Conservation and Genetic Improvement Programs with Antagonistic Fitness and Productivity Traits. Front Genet (2016) 0.79
A Genome Wide Association Study on Age at First Calving Using High Density Single Nucleotide Polymorphism Chips in Hanwoo (Bos taurus coreanae). Asian-Australas J Anim Sci (2014) 0.78
Assessment of whole-genome regression for type II diabetes. PLoS One (2015) 0.78
Extent of Linkage Disequilibrium and Effective Population Size in Four South African Sanga Cattle Breeds. Front Genet (2015) 0.78
Artificial selection with traditional or genomic relationships: consequences in coancestry and genetic diversity. Front Genet (2015) 0.78
Improvement of Predictive Ability by Uniform Coverage of the Target Genetic Space. G3 (Bethesda) (2016) 0.78
Comparative analysis of the GBLUP, emBayesB, and GWAS algorithms to predict genetic values in large yellow croaker (Larimichthys crocea). BMC Genomics (2016) 0.77
Accounting for trait architecture in genomic predictions of US Holstein cattle using a weighted realized relationship matrix. Genet Sel Evol (2015) 0.77
A second generation human haplotype map of over 3.1 million SNPs. Nature (2007) 85.39
Global variation in copy number in the human genome. Nature (2006) 57.50
The structure of haplotype blocks in the human genome. Science (2002) 50.88
Prediction of total genetic value using genome-wide dense marker maps. Genetics (2001) 41.25
Efficient methods to compute genomic predictions. J Dairy Sci (2008) 16.76
Linkage disequilibrium and homozygosity of chromosome segments in finite populations. Theor Popul Biol (1971) 13.68
Linkage disequilibrium in finite populations. Theor Appl Genet (1968) 12.55
The impact of genetic relationship information on genome-assisted breeding values. Genetics (2007) 10.04
Invited review: Genomic selection in dairy cattle: progress and challenges. J Dairy Sci (2009) 9.76
Invited review: reliability of genomic predictions for North American Holstein bulls. J Dairy Sci (2009) 9.04
Estimating polygenic effects using markers of the entire genome. Genetics (2003) 8.67
Increased accuracy of artificial selection by using the realized relationship matrix. Genet Res (Camb) (2009) 8.38
Best linear unbiased estimation and prediction under a selection model. Biometrics (1975) 8.23
Genomic selection: prediction of accuracy and maximisation of long term response. Genetica (2008) 8.15
Assumption-free estimation of heritability from genome-wide identity-by-descent sharing between full siblings. PLoS Genet (2006) 7.13
Recent human effective population size estimated from linkage disequilibrium. Genome Res (2007) 6.79
Effect of total allelic relationship on accuracy of evaluation and response to selection. J Anim Sci (1997) 5.79
Accuracy of predicting the genetic risk of disease using a genome-wide approach. PLoS One (2008) 4.96
Additive genetic variability and the Bayesian alphabet. Genetics (2009) 4.75
Bayesian LASSO for quantitative trait loci mapping. Genetics (2008) 4.67
Predicting unobserved phenotypes for complex traits from whole-genome SNP data. PLoS Genet (2008) 4.57
Islands of linkage disequilibrium. Nat Genet (2001) 4.08
Factors affecting accuracy from genomic selection in populations derived from multiple inbred lines: a Barley case study. Genetics (2009) 3.39
A fast algorithm for BayesB type of prediction of genome-wide estimates of genetic value. Genet Sel Evol (2009) 3.22
Comparison of analyses of the QTLMAS XII common dataset. I: Genomic selection. BMC Proc (2009) 2.96
Inbreeding in genome-wide selection. J Anim Breed Genet (2007) 2.81
Genetic and functional confirmation of the causality of the DGAT1 K232A quantitative trait nucleotide in affecting milk yield and composition. Proc Natl Acad Sci U S A (2004) 2.72
Extending Xu's Bayesian model for estimating polygenic effects using markers of the entire genome. Genetics (2005) 2.53
Prediction of response to marker-assisted and genomic selection using selection index theory. J Anim Breed Genet (2007) 2.39
Accuracy of breeding values of 'unrelated' individuals predicted by dense SNP genotyping. Genet Sel Evol (2009) 2.39
Machine learning classification procedure for selecting SNPs in genomic selection: application to early mortality in broilers. J Anim Breed Genet (2007) 2.01
Benefits from marker-assisted selection under an additive polygenic genetic model. J Anim Sci (2005) 1.81
Reducing dimensionality for prediction of genome-wide breeding values. Genet Sel Evol (2009) 1.48
A two-step approach combining the Gompertz growth model with genomic selection for longitudinal data. BMC Proc (2010) 1.03
Predicting genetic merit for mastitis and fertility in dairy cattle using genome wide selection and high density SNP screens. Dev Biol (Basel) (2008) 0.95
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (2009) 7.64
Accuracy of predicting the genetic risk of disease using a genome-wide approach. PLoS One (2008) 4.96
Whole-genome regression and prediction methods applied to plant and animal breeding. Genetics (2012) 4.13
Th1 and Th17 hypercytokinemia as early host response signature in severe pandemic influenza. Crit Care (2009) 3.48
A fast algorithm for BayesB type of prediction of genome-wide estimates of genetic value. Genet Sel Evol (2009) 3.22
The accuracy of Genomic Selection in Norwegian red cattle assessed by cross-validation. Genetics (2009) 2.36
Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking. Genetics (2012) 2.00
On the genetic interpretation of disease data. PLoS One (2010) 1.72
Development of a high density 600K SNP genotyping array for chicken. BMC Genomics (2013) 1.68
Heritability of syringomyelia in Cavalier King Charles spaniels. Vet J (2009) 1.62
Imputation of missing genotypes from sparse to high density using long-range phasing. Genetics (2011) 1.57
Reducing dimensionality for prediction of genome-wide breeding values. Genet Sel Evol (2009) 1.48
The importance of identity-by-state information for the accuracy of genomic selection. Genet Sel Evol (2012) 1.44
Genomic selection requires genomic control of inbreeding. Genet Sel Evol (2012) 1.38
Localising loci underlying complex trait variation using Regional Genomic Relationship Mapping. PLoS One (2012) 1.34
Efficiency of the use of pedigree and molecular marker information in conservation programs. Genetics (2005) 1.33
Linkage analysis of the genetic loci for high myopia on 18p, 12q, and 17q in 51 U.K. families. Invest Ophthalmol Vis Sci (2004) 1.29
Genomic selection and complex trait prediction using a fast EM algorithm applied to genome-wide markers. BMC Bioinformatics (2010) 1.27
Homozygosity for a single base-pair mutation in the oocyte-specific GDF9 gene results in sterility in Thoka sheep. Reproduction (2009) 1.13
Heritability of premature mitral valve disease in Cavalier King Charles spaniels. Vet J (2010) 1.13
Minimizing inbreeding by managing genetic contributions across generations. Genetics (2003) 1.11
Persistence of accuracy of genome-wide breeding values over generations when including a polygenic effect. Genet Sel Evol (2009) 1.10
Novel methods for quantifying individual host response to infectious pathogens for genetic analyses. Front Genet (2012) 1.07
Genetic evaluation of hip score in UK Labrador Retrievers. PLoS One (2010) 1.07
Effect of the prior distribution of SNP effects on the estimation of total breeding value. BMC Proc (2012) 1.04
The first step toward genetic selection for host tolerance to infectious pathogens: obtaining the tolerance phenotype through group estimates. Front Genet (2012) 1.03
Indirect genetic effects and the spread of infectious disease: are we capturing the full heritable variation underlying disease prevalence? PLoS One (2012) 1.02
Optimisation of contribution of candidate parents to maximise genetic gain and restricting inbreeding using semidefinite programming. Genet Sel Evol (2007) 1.01
Prediction of IBD based on population history for fine gene mapping. Genet Sel Evol (2006) 1.01
Comparative analyses of genetic trends and prospects for selection against hip and elbow dysplasia in 15 UK dog breeds. BMC Genet (2013) 0.97
The power of regional heritability analysis for rare and common variant detection: simulations and application to eye biometrical traits. Front Genet (2013) 0.94
Correlations in refractive errors between siblings in the Singapore Cohort Study of Risk factors for Myopia. Br J Ophthalmol (2006) 0.94
Uses and implications of field disease data for livestock genomic and genetics studies. Front Genet (2012) 0.93
Strategies for implementing genomic selection in family-based aquaculture breeding schemes: double haploid sib test populations. Genet Sel Evol (2012) 0.93
Defining the assumptions underlying modeling of epistatic QTL using variance component methods. J Hered (2008) 0.92
Genetic evaluation of the nine component features of hip score in UK Labrador Retrievers. PLoS One (2010) 0.92
The advantage of factorial mating under selection is uncovered by deterministically predicted rates of inbreeding. Genet Sel Evol (2004) 0.92
Using genomic tools to maintain diversity and fitness in conservation programmes. Mol Ecol (2013) 0.92
Effect of non-random mating on genomic and BLUP selection schemes. Genet Sel Evol (2012) 0.92
On the prediction of simultaneous inbreeding coefficients at multiple loci. Genet Res (2004) 0.90
A genome-wide association study of osteochondritis dissecans in the Thoroughbred. Mamm Genome (2011) 0.89
Marker assisted selection with optimised contributions of the candidates to selection. Genet Sel Evol (2002) 0.89
Genomic contributions in livestock gene introgression programmes. Genet Sel Evol (2005) 0.88
Genome wide analysis reveals single nucleotide polymorphisms associated with fatness and putative novel copy number variants in three pig breeds. BMC Genomics (2013) 0.87
Genetic control of canine leishmaniasis: genome-wide association study and genomic selection analysis. PLoS One (2012) 0.86
Lambs with scrapie susceptible genotypes have higher postnatal survival. PLoS One (2007) 0.86
Genome-wide analysis of mitral valve disease in Cavalier King Charles Spaniels. Vet J (2011) 0.86
Prediction of genetic gain from quadratic optimisation with constrained rates of inbreeding. Genet Sel Evol (2006) 0.86
Detecting inbreeding depression for reproductive traits in Iberian pigs using genome-wide data. Genet Sel Evol (2015) 0.85
Genome-wide estimates of coancestry and inbreeding in a closed herd of ancient Iberian pigs. PLoS One (2013) 0.84
Maintaining genetic diversity using molecular coancestry: the effect of marker density and effective population size. Genet Sel Evol (2013) 0.84
Detecting dominant QTL with variance component analysis in simulated pedigrees. Genet Res (Camb) (2008) 0.84
A unifying theory for genetic epidemiological analysis of binary disease data. Genet Sel Evol (2014) 0.83
Detecting parent of origin and dominant QTL in a two-generation commercial poultry pedigree using variance component methodology. Genet Sel Evol (2009) 0.82
Precision of methods for calculating identity-by-descent matrices using multiple markers. Genet Sel Evol (2002) 0.80
Implications of conflicting associations of the prion protein (PrP) gene with scrapie susceptibility and fitness on the persistence of scrapie. PLoS One (2009) 0.80
Quantitative trait loci mapping for canine hip dysplasia and its related traits in UK Labrador Retrievers. BMC Genomics (2014) 0.79
Field-isolated genotypes of Mycobacterium bovis vary in virulence and influence case pathology but do not affect outbreak size. PLoS One (2013) 0.79
Associations between lamb survival and prion protein genotype: analysis of data for ten sheep breeds in Great Britain. BMC Vet Res (2009) 0.79
Evaluating alternate models to estimate genetic parameters of calving traits in United Kingdom Holstein-Friesian dairy cattle. Genet Sel Evol (2012) 0.78
Applying different genomic evaluation approaches on QTLMAS2010 dataset. BMC Proc (2011) 0.78
A regression-based approach to selection mapping. J Hered (2011) 0.78
Information content in genome-wide scans: concordance between patterns of genetic differentiation and linkage mapping associations. BMC Genomics (2011) 0.78
Mapping of quantitative trait loci affecting classical scrapie incubation time in a population comprising several generations of scrapie-infected sheep. J Gen Virol (2009) 0.77
Detectability of bovine TB using the tuberculin skin test does not vary significantly according to pathogen genotype within Northern Ireland. Infect Genet Evol (2013) 0.77
Detection of multiple quantitative trait loci and their pleiotropic effects in outbred pig populations. Genet Sel Evol (2009) 0.76
Combined detection and introgression of QTL in outbred populations. Genet Sel Evol (2010) 0.75
Impact of nonrandom mating on genetic variance and gene flow in populations with mass selection. Genetics (2004) 0.75
Prioritizing animals for dense genotyping in order to impute missing genotypes of sparsely genotyped animals. Genet Sel Evol (2014) 0.75
How far and how fast can genomics take us towards precision breeding? J Anim Breed Genet (2011) 0.75
Neuroprotective Effect of Hydroxytyrosol In Experimental Diabetes Mellitus. J Agric Food Chem (2016) 0.75
Minimising inbreeding in small populations by rotational mating with frozen semen. Genet Res (2004) 0.75
Predicting the consequences of selecting on PrP genotypes on PrP frequencies, performance and inbreeding in commercial meat sheep populations. Genet Sel Evol (2007) 0.75