Published in BMC Proc on February 23, 2009
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Whole-genome regression and prediction methods applied to plant and animal breeding. Genetics (2012) 4.13
Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking. Genetics (2012) 2.00
Estimating additive and non-additive genetic variances and predicting genetic merits using genome-wide dense single nucleotide polymorphism markers. PLoS One (2012) 1.93
A common reference population from four European Holstein populations increases reliability of genomic predictions. Genet Sel Evol (2011) 1.74
Breeding value prediction for production traits in layer chickens using pedigree or genomic relationships in a reduced animal model. Genet Sel Evol (2011) 1.55
Genomic selection and complex trait prediction using a fast EM algorithm applied to genome-wide markers. BMC Bioinformatics (2010) 1.27
Comparison of analyses of the QTLMAS XII common dataset. II: genome-wide association and fine mapping. BMC Proc (2009) 1.27
Back to basics for Bayesian model building in genomic selection. Genetics (2012) 1.15
Comparison of analyses of the QTLMAS XIII common dataset. I: genomic selection. BMC Proc (2010) 1.13
Comparison of statistical procedures for estimating polygenic effects using dense genome-wide marker data. BMC Proc (2009) 1.01
Bayesian genomic selection: the effect of haplotype length and priors. BMC Proc (2009) 0.99
Data modeling as a main source of discrepancies in single and multiple marker association methods. BMC Proc (2009) 0.97
The impact of single nucleotide polymorphism selection on prediction of genomewide breeding values. BMC Proc (2009) 0.94
Pre-selection of markers for genomic selection. BMC Proc (2011) 0.90
Bayesian inference of genetic parameters based on conditional decompositions of multivariate normal distributions. Genetics (2010) 0.90
A Bayesian QTL linkage analysis of the common dataset from the 12th QTLMAS workshop. BMC Proc (2009) 0.88
Evaluation of a genome-wide approach to multiple marker association considering different marker densities. BMC Proc (2009) 0.86
Comparison of analyses of the XVth QTLMAS common dataset III: Genomic Estimations of Breeding Values. BMC Proc (2012) 0.85
Impact of prior specifications in a shrinkage-inducing Bayesian model for quantitative trait mapping and genomic prediction. Genet Sel Evol (2013) 0.85
Bayesian adaptive Markov chain Monte Carlo estimation of genetic parameters. Heredity (Edinb) (2012) 0.84
A multiple-SNP approach for genome-wide association study of milk production traits in Chinese Holstein cattle. PLoS One (2014) 0.81
Genomic selection for the improvement of antibody response to Newcastle disease and avian influenza virus in chickens. PLoS One (2014) 0.81
Accuracy of genomic prediction for growth and carcass traits in Chinese triple-yellow chickens. BMC Genet (2014) 0.81
XVth QTLMAS: simulated dataset. BMC Proc (2012) 0.81
Fast genomic predictions via Bayesian G-BLUP and multilocus models of threshold traits including censored Gaussian data. G3 (Bethesda) (2013) 0.78
An Efficient Genome-Wide Multilocus Epistasis Search. Genetics (2015) 0.77
Weighting Strategies for Single-Step Genomic BLUP: An Iterative Approach for Accurate Calculation of GEBV and GWAS. Front Genet (2016) 0.75
Genome-Wide Analysis of Seed Acid Detergent Lignin (ADL) and Hull Content in Rapeseed (Brassica napus L.). PLoS One (2015) 0.75
Use of direct and iterative solvers for estimation of SNP effects in genome-wide selection. Genet Mol Biol (2010) 0.75
Genetic prediction of complex traits: integrating infinitesimal and marked genetic effects. Genetica (2013) 0.75
Prediction of total genetic value using genome-wide dense marker maps. Genetics (2001) 41.25
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet (2005) 20.97
The impact of genetic relationship information on genome-assisted breeding values. Genetics (2007) 10.04
The distribution of the effects of genes affecting quantitative traits in livestock. Genet Sel Evol (2001) 6.78
Genomic-assisted prediction of genetic value with semiparametric procedures. Genetics (2006) 4.69
Strategy for applying genome-wide selection in dairy cattle. J Anim Breed Genet (2006) 4.63
Structural variation of the human genome. Annu Rev Genomics Hum Genet (2006) 4.25
Linkage disequilibrium and persistence of phase in Holstein-Friesian, Jersey and Angus cattle. Genetics (2008) 4.20
Whole genome linkage disequilibrium maps in cattle. BMC Genet (2007) 3.28
Extent of linkage disequilibrium in Holstein cattle in North America. J Dairy Sci (2008) 2.24
The importance of haplotype length and heritability using genomic selection in dairy cattle. J Anim Breed Genet (2009) 1.57
Estimating genomic breeding values from the QTL-MAS Workshop Data using a single SNP and haplotype/IBD approach. BMC Proc (2009) 1.32
Pre-selection of most significant SNPS for the estimation of genomic breeding values. BMC Proc (2009) 1.06
Comparison of statistical procedures for estimating polygenic effects using dense genome-wide marker data. BMC Proc (2009) 1.01
Bayesian genomic selection: the effect of haplotype length and priors. BMC Proc (2009) 0.99
The impact of single nucleotide polymorphism selection on prediction of genomewide breeding values. BMC Proc (2009) 0.94
Genomewide rapid association using mixed model and regression: a fast and simple method for genomewide pedigree-based quantitative trait loci association analysis. Genetics (2007) 7.09
Whole-genome resequencing reveals loci under selection during chicken domestication. Nature (2010) 5.48
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature (2004) 5.24
A unified model for functional and statistical epistasis and its application in quantitative trait Loci analysis. Genetics (2007) 2.47
Best linear unbiased prediction of genomic breeding values using a trait-specific marker-derived relationship matrix. PLoS One (2010) 2.08
Genome-wide effects of long-term divergent selection. PLoS Genet (2010) 1.82
A common reference population from four European Holstein populations increases reliability of genomic predictions. Genet Sel Evol (2011) 1.74
Statistical epistasis is a generic feature of gene regulatory networks. Genetics (2006) 1.72
Evolutionary potential of hidden genetic variation. Trends Ecol Evol (2008) 1.65
Deregressed EBV as the response variable yield more reliable genomic predictions than traditional EBV in pure-bred pigs. Genet Sel Evol (2011) 1.31
Quantitative trait loci with parent-of-origin effects in chicken. Genet Res (2004) 1.29
Major growth QTLs in fowl are related to fearful behavior: possible genetic links between fear responses and production traits in a red junglefowl x white leghorn intercross. Behav Genet (2004) 1.28
Comparison on genomic predictions using three GBLUP methods and two single-step blending methods in the Nordic Holstein population. Genet Sel Evol (2012) 1.27
Genetic analysis of an F(2) intercross between two chicken lines divergently selected for body-weight. BMC Genomics (2009) 1.27
Comparison of analyses of the QTLMAS XII common dataset. II: genome-wide association and fine mapping. BMC Proc (2009) 1.27
How to perform meaningful estimates of genetic effects. PLoS Genet (2008) 1.26
Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle. BMC Genomics (2014) 1.23
An improved method for quantitative trait loci detection and identification of within-line segregation in F2 intercross designs. Genetics (2008) 1.23
Replication and explorations of high-order epistasis using a large advanced intercross line pedigree. PLoS Genet (2011) 1.20
Genetic architecture of tameness in a rat model of animal domestication. Genetics (2009) 1.15
Fine mapping and replication of QTL in outbred chicken advanced intercross lines. Genet Sel Evol (2011) 1.14
Partitioning additive genetic variance into genomic and remaining polygenic components for complex traits in dairy cattle. BMC Genet (2012) 1.14
QTL analysis of a red junglefowl x White Leghorn intercross reveals trade-off in resource allocation between behavior and production traits. Behav Genet (2002) 1.13
Separation of base allele and sampling term effects gives new insights in variance component QTL analysis. BMC Genet (2007) 1.12
Dissection of the genetic architecture of body weight in chicken reveals the impact of epistasis on domestication traits. Genetics (2008) 1.07
Setting the Standard: A Special Focus on Genomic Selection in GENETICS and G3. G3 (Bethesda) (2012) 1.06
Rapid and robust association mapping of expression quantitative trait loci. BMC Proc (2007) 1.01
Genome position specific priors for genomic prediction. BMC Genomics (2012) 0.99
Chicken genomics: feather-pecking and victim pigmentation. Nature (2004) 0.99
Validation of associations for female fertility traits in Nordic Holstein, Nordic Red and Jersey dairy cattle. BMC Genet (2014) 0.98
Increasing the efficiency of variance component quantitative trait loci analysis by using reduced-rank identity-by-descent matrices. Genetics (2007) 0.97
Does genomic selection have a future in plant breeding? Trends Biotechnol (2013) 0.95
Genetic dissection of growth traits in a Chinese indigenous × commercial broiler chicken cross. BMC Genomics (2013) 0.95
Phenotypic evolution from genetic polymorphisms in a radial network architecture. BMC Biol (2007) 0.95
Genomic evaluation of both purebred and crossbred performances. Genet Sel Evol (2014) 0.95
Hierarchical likelihood opens a new way of estimating genetic values using genome-wide dense marker maps. BMC Proc (2011) 0.95
The genetic dissection of immune response using gene-expression studies and genome mapping. Vet Immunol Immunopathol (2005) 0.94
Efficient algorithms for quantitative trait loci mapping problems. J Comput Biol (2002) 0.93
Linkage disequilibrium and inbreeding estimation in Spanish Churra sheep. BMC Genet (2012) 0.93
Defining the assumptions underlying modeling of epistatic QTL using variance component methods. J Hered (2008) 0.92
Comparison of single-trait and multiple-trait genomic prediction models. BMC Genet (2014) 0.92
Analysis of the real EADGENE data set: comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (open access publication). Genet Sel Evol (2007) 0.91
Quantitative trait loci for fertility traits in Finnish Ayrshire cattle. Genet Sel Evol (2008) 0.91
Consistency of linkage disequilibrium between Chinese and Nordic Holsteins and genomic prediction for Chinese Holsteins using a joint reference population. Genet Sel Evol (2013) 0.89
SNP detection and prediction of variability between chicken lines using genome resequencing of DNA pools. BMC Genomics (2010) 0.89
Why breeding values estimated using familial data should not be used for genome-wide association studies. G3 (Bethesda) (2014) 0.89
GWA analysis for milk production traits in dairy sheep and genetic support for a QTN influencing milk protein percentage in the LALBA gene. PLoS One (2012) 0.88
Genome wide association studies for body conformation traits in the Chinese Holstein cattle population. BMC Genomics (2013) 0.88
Third Report on Chicken Genes and Chromosomes 2015. Cytogenet Genome Res (2015) 0.88
Fine mapping QTL for female fertility on BTA04 and BTA13 in dairy cattle using HD SNP and sequence data. BMC Genomics (2014) 0.87
PASE: a novel method for functional prediction of amino acid substitutions based on physicochemical properties. Front Genet (2013) 0.86
Efficiency of genomic selection using Bayesian multi-marker models for traits selected to reflect a wide range of heritabilities and frequencies of detected quantitative traits loci in mice. BMC Genet (2012) 0.86
Dynamics of adaptive alleles in divergently selected body weight lines of chickens. G3 (Bethesda) (2013) 0.85
Analysis of a simulated microarray dataset: comparison of methods for data normalisation and detection of differential expression (open access publication). Genet Sel Evol (2007) 0.84
How to deal with genotype uncertainty in variance component quantitative trait loci analyses. Genet Res (Camb) (2011) 0.84
Genomic selection for QTL-MAS data using a trait-specific relationship matrix. BMC Proc (2011) 0.83
A general and efficient method for estimating continuous IBD functions for use in genome scans for QTL. BMC Bioinformatics (2007) 0.83
Analysis of the real EADGENE data set: multivariate approaches and post analysis (open access publication). Genet Sel Evol (2007) 0.83
Setting the standard: a special focus on genomic selection in GENETICS and G3. Genetics (2012) 0.83
An Improved Method for Estimating Chromosomal Line Origin in QTL Analysis of Crosses Between Outbred Lines. G3 (Bethesda) (2011) 0.83
Analyzes of genome-wide association follow-up study for calving traits in dairy cattle. BMC Genet (2012) 0.83
Epistatic regulation of behavioural and morphological traits in the zebrafish (Danio rerio). Behav Genet (2006) 0.82
Identification of candidate genes and mutations in QTL regions for chicken growth using bioinformatic analysis of NGS and SNP-chip data. Front Genet (2013) 0.81
The effect of using genealogy-based haplotypes for genomic prediction. Genet Sel Evol (2013) 0.81
Genetic analysis of metabolic traits in an intercross between body weight-selected chicken lines. Physiol Genomics (2010) 0.81
Optimal design of genetic studies of gene expression with two-color microarrays in outbred crosses. Genetics (2008) 0.81
A genetic algorithm based method for stringent haplotyping of family data. BMC Genet (2009) 0.81
Accuracy of genomic prediction for growth and carcass traits in Chinese triple-yellow chickens. BMC Genet (2014) 0.81
Selection on variance-controlling genes: adaptability or stability. Evolution (2012) 0.80
qtl.outbred: Interfacing outbred line cross data with the R/qtl mapping software. BMC Res Notes (2011) 0.80
Analysis of the genetics of boar taint reveals both single SNPs and regional effects. BMC Genomics (2014) 0.79
Heritability of cortisol response to confinement stress in European sea bass dicentrarchus labrax. Genet Sel Evol (2012) 0.79
Generation of a multi-locus chicken introgression line to study the effects of genetic interactions on metabolic phenotypes in chickens. Front Genet (2012) 0.78
A region on chicken chromosome 2 affects both egg white thinning and egg weight. Genet Sel Evol (2005) 0.78
Shift in chicken intestinal gene association networks after infection with Salmonella. Comp Biochem Physiol Part D Genomics Proteomics (2011) 0.77
Modelling dominance in a flexible intercross analysis. BMC Genet (2009) 0.77
Beware of risk for increased false positive rates in genome-wide association studies for phenotypic variability. Front Genet (2013) 0.77
Genomic analysis of variation in hindlimb musculature of mice from the C57BL/6J and DBA/2J lineage. J Hered (2010) 0.77
MAPfastR: quantitative trait loci mapping in outbred line crosses. G3 (Bethesda) (2013) 0.76
Facilitating discovery: the role of society journals in collaborative science. G3 (Bethesda) (2012) 0.75
The EADGENE and SABRE post-analyses workshop. BMC Proc (2009) 0.75
Towards in vitro genetics. Trends Genet (2007) 0.75
Higher order interactions: detection of epistasis using machine learning and evolutionary computation. Methods Mol Biol (2013) 0.75
Estimation and interpretation of genetic effects with epistasis using the NOIA model. Methods Mol Biol (2012) 0.75
Capacitating epistasis--detection and role in the genetic architecture of complex traits. Methods Mol Biol (2015) 0.75
Assessment of genetic diversity in Chinese eared pheasant using fluorescent-AFLP markers. Mol Phylogenet Evol (2010) 0.75
A note on permutation tests for genetic association analysis of quantitative traits when variances are heterogeneous. Genet Epidemiol (2009) 0.75