Published in Plant Physiol on March 03, 2010
Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana. Nat Rev Genet (2010) 1.91
Overexpression of Arabidopsis ECERIFERUM1 promotes wax very-long-chain alkane biosynthesis and influences plant response to biotic and abiotic stresses. Plant Physiol (2011) 1.70
Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit. Mol Syst Biol (2012) 1.38
Inducible repression of multiple expansin genes leads to growth suppression during leaf development. Plant Physiol (2012) 1.23
Computational method for quantifying growth patterns at the adaxial leaf surface in three dimensions. Plant Physiol (2012) 1.16
Flavonols accumulate asymmetrically and affect auxin transport in Arabidopsis. Plant Physiol (2011) 1.11
Spatiotemporal variation of leaf epidermal cell growth: a quantitative analysis of Arabidopsis thaliana wild-type and triple cyclinD3 mutant plants. Ann Bot (2012) 1.10
Chloroplast 2010: a database for large-scale phenotypic screening of Arabidopsis mutants. Plant Physiol (2011) 1.09
Gene regulation by cytokinin in Arabidopsis. Front Plant Sci (2012) 1.09
PHENOPSIS DB: an information system for Arabidopsis thaliana phenotypic data in an environmental context. BMC Plant Biol (2011) 1.03
Natural Genetic Variation for Growth and Development Revealed by High-Throughput Phenotyping in Arabidopsis thaliana. G3 (Bethesda) (2012) 1.03
Jasmonate controls leaf growth by repressing cell proliferation and the onset of endoreduplication while maintaining a potential stand-by mode. Plant Physiol (2013) 1.03
Multiscale digital Arabidopsis predicts individual organ and whole-organism growth. Proc Natl Acad Sci U S A (2014) 1.01
Optimizing experimental procedures for quantitative evaluation of crop plant performance in high throughput phenotyping systems. Front Plant Sci (2015) 1.00
Maize source leaf adaptation to nitrogen deficiency affects not only nitrogen and carbon metabolism but also control of phosphate homeostasis. Plant Physiol (2012) 1.00
Predicting gene function from uncontrolled expression variation among individual wild-type Arabidopsis plants. Plant Cell (2013) 0.92
Adaptation of maize source leaf metabolism to stress related disturbances in carbon, nitrogen and phosphorus balance. BMC Genomics (2013) 0.91
A Journey Through a Leaf: Phenomics Analysis of Leaf Growth in Arabidopsis thaliana. Arabidopsis Book (2015) 0.90
Objective definition of rosette shape variation using a combined computer vision and data mining approach. PLoS One (2014) 0.86
New insights into the control of endoreduplication: endoreduplication could be driven by organ growth in Arabidopsis leaves. Plant Physiol (2011) 0.85
Metabolic fingerprinting of Arabidopsis thaliana accessions. Front Plant Sci (2015) 0.85
Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet (2016) 0.84
Natural variation identifies multiple loci controlling petal shape and size in Arabidopsis thaliana. PLoS One (2013) 0.81
Phenomics for photosynthesis, growth and reflectance in Arabidopsis thaliana reveals circadian and long-term fluctuations in heritability. Plant Methods (2016) 0.81
Envirotyping for deciphering environmental impacts on crop plants. Theor Appl Genet (2016) 0.80
Evaluation of alternative RNA labeling protocols for transcript profiling with Arabidopsis AGRONOMICS1 tiling arrays. Plant Methods (2012) 0.80
Metabolomic Characterization of Knockout Mutants in Arabidopsis: Development of a Metabolite Profiling Database for Knockout Mutants in Arabidopsis. Plant Physiol (2014) 0.79
MultiSite Gateway-Compatible Cell Type-Specific Gene-Inducible System for Plants. Plant Physiol (2015) 0.78
Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure. Open Biol (2015) 0.76
Plant Growth Environments with Programmable Relative Humidity and Homogeneous Nutrient Availability. PLoS One (2016) 0.75
Transcriptomes of Plant Gametophytes Have a Higher Proportion of Rapidly Evolving and Young Genes than Sporophytes. Mol Biol Evol (2016) 0.75
How well do you know your growth chambers? Testing for chamber effect using plant traits. Plant Methods (2015) 0.75
Introducing a sensor to measure budburst and its environmental drivers. Front Plant Sci (2015) 0.75
Comparative Phenotypical and Molecular Analyses of Arabidopsis Grown under Fluorescent and LED Light. Plants (Basel) (2017) 0.75
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet (2000) 336.52
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet (2001) 63.36
The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol (2007) 10.24
Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants. Plant Cell (2001) 7.99
Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat Protoc (2006) 6.33
Cell cycling and cell enlargement in developing leaves of Arabidopsis. Dev Biol (1999) 5.48
Dominant negative mutants of the Cdc2 kinase uncouple cell division from iterative plant development. EMBO J (1995) 3.92
Cell cycle regulation in plant development. Annu Rev Genet (2006) 3.82
Metabolite profiling: from diagnostics to systems biology. Nat Rev Mol Cell Biol (2004) 3.31
Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their co-regulation in biochemical networks. Proteomics (2004) 2.81
Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages. Comp Funct Genomics (2005) 2.48
Nucleocytoplasmic partitioning of the plant photoreceptors phytochrome A, B, C, D, and E is regulated differentially by light and exhibits a diurnal rhythm. Plant Cell (2002) 2.26
Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes. Genome Biol (2006) 2.25
Control of the actin cytoskeleton in plant cell growth. Annu Rev Plant Biol (2006) 2.10
Genome-wide analysis of gene expression profiles associated with cell cycle transitions in growing organs of Arabidopsis. Plant Physiol (2005) 2.06
Remodeling the cytoskeleton for growth and form: an overview with some new views. Annu Rev Plant Biol (2003) 2.03
Analysis of leaf development in fugu mutants of Arabidopsis reveals three compensation modes that modulate cell expansion in determinate organs. Plant Physiol (2007) 1.99
Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks. Plant Physiol (2009) 1.90
Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant J (2007) 1.74
Individual leaf development in Arabidopsis thaliana: a stable thermal-time-based programme. Ann Bot (2002) 1.68
Plasticity to soil water deficit in Arabidopsis thaliana: dissection of leaf development into underlying growth dynamic and cellular variables reveals invisible phenotypes. Plant Cell Environ (2006) 1.57
Multi-scale phenotyping of leaf expansion in response to environmental changes: the whole is more than the sum of parts. Plant Cell Environ (2009) 1.50
Variability of phyllochron, plastochron and rate of increase in height in photoperiod-sensitive sorghum varieties. Ann Bot (2008) 1.44
AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling. Plant Physiol (2009) 1.33
MIAME/Plant - adding value to plant microarrray experiments. Plant Methods (2006) 1.29
Phenotypic plasticity and growth temperature: understanding interspecific variability. J Exp Bot (2005) 1.22
Dealing with the genotype x environment interaction via a modelling approach: a comparison of QTLs of maize leaf length or width with QTLs of model parameters. J Exp Bot (2004) 1.19
Using genotype x nitrogen interaction variables to evaluate the QTL involved in wheat tolerance to nitrogen constraints. Theor Appl Genet (2007) 1.18
Combined genetic and modeling approaches reveal that epidermal cell area and number in leaves are controlled by leaf and plant developmental processes in Arabidopsis. Plant Physiol (2008) 1.11
A dynamic analysis of the shade-induced plasticity in Arabidopsis thaliana rosette leaf development reveals new components of the shade-adaptative response. Ann Bot (2005) 1.04
Day length affects the dynamics of leaf expansion and cellular development in Arabidopsis thaliana partially through floral transition timing. Ann Bot (2007) 0.98
Standardizing experimental protocols. Curr Opin Biotechnol (2008) 0.89
Genotypic variation for drought tolerance in Beta vulgaris. Ann Bot (2002) 0.86
Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science (2003) 39.19
GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol (2004) 19.29
A gene expression map of Arabidopsis thaliana development. Nat Genet (2005) 17.39
Control of leaf morphogenesis by microRNAs. Nature (2003) 11.36
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature (2010) 10.66
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science (2007) 9.85
Target mimicry provides a new mechanism for regulation of microRNA activity. Nat Genet (2007) 9.48
Specific effects of microRNAs on the plant transcriptome. Dev Cell (2005) 8.48
Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Res (2008) 8.44
Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes. Adv Bioinformatics (2008) 8.36
Criteria for annotation of plant MicroRNAs. Plant Cell (2008) 7.49
GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics (2004) 7.33
Highly specific gene silencing by artificial microRNAs in Arabidopsis. Plant Cell (2006) 7.06
Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nat Genet (2011) 6.59
Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat Protoc (2006) 6.33
Integration of spatial and temporal information during floral induction in Arabidopsis. Science (2005) 6.24
Large-scale identification of single-feature polymorphisms in complex genomes. Genome Res (2003) 6.04
NASCArrays: a repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res (2004) 5.82
Recombination and linkage disequilibrium in Arabidopsis thaliana. Nat Genet (2007) 5.69
Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature (2012) 5.67
The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell (2009) 5.52
A systematic comparison and evaluation of biclustering methods for gene expression data. Bioinformatics (2006) 5.36
The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science (2010) 5.19
From plant traits to plant communities: a statistical mechanistic approach to biodiversity. Science (2006) 5.14
The extent of linkage disequilibrium in Arabidopsis thaliana. Nat Genet (2002) 4.96
miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana. Cell (2009) 4.95
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proc Natl Acad Sci U S A (2009) 4.65
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet (2011) 4.65
Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nat Biotechnol (2006) 4.47
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis. Science (2012) 4.41
Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics. Science (2008) 4.38
Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants. PLoS Biol (2007) 4.30
SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nat Methods (2009) 4.01
Antagonistic regulation of PIN phosphorylation by PP2A and PINOID directs auxin flux. Cell (2007) 3.84
The auxin influx carrier LAX3 promotes lateral root emergence. Nat Cell Biol (2008) 3.69
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature (2011) 3.66
Root gravitropism requires lateral root cap and epidermal cells for transport and response to a mobile auxin signal. Nat Cell Biol (2005) 3.61
Modular cloning in plant cells. Trends Plant Sci (2005) 3.46
Dissection of floral induction pathways using global expression analysis. Development (2003) 3.43
PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics (2006) 3.34
A proposed framework for the description of plant metabolomics experiments and their results. Nat Biotechnol (2004) 3.32
Metabolite profiling: from diagnostics to systems biology. Nat Rev Mol Cell Biol (2004) 3.31
GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Lett (2005) 3.29
Next-generation genetics in plants. Nature (2008) 3.27
Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease. Nat Biotechnol (2013) 3.20
The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. Curr Biol (2004) 3.16
Calmodulins and calcineurin B-like proteins: calcium sensors for specific signal response coupling in plants. Plant Cell (2002) 3.15
Ethylene upregulates auxin biosynthesis in Arabidopsis seedlings to enhance inhibition of root cell elongation. Plant Cell (2007) 3.14
Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. J Bacteriol (2005) 3.12
Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell (2005) 3.12
Genome-wide gene expression in an Arabidopsis cell suspension. Plant Mol Biol (2003) 3.12
The scale of population structure in Arabidopsis thaliana. PLoS Genet (2010) 3.12
A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity. Science (2014) 3.11
The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. Nat Genet (2006) 3.11
Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol (2008) 3.09
Transcriptional control of gene expression by microRNAs. Cell (2010) 3.05
Gene silencing in plants using artificial microRNAs and other small RNAs. Plant J (2008) 3.03
Crosstalk between cytosolic and plastidial pathways of isoprenoid biosynthesis in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2003) 3.01
Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4. Nature (2008) 3.00
The Polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1. Genes Dev (2003) 2.99
A thermosensory pathway controlling flowering time in Arabidopsis thaliana. Nat Genet (2003) 2.95
Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana. Genome Biol (2004) 2.95
Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319. Dev Cell (2007) 2.90
Control of proliferation, endoreduplication and differentiation by the Arabidopsis E2Fa-DPa transcription factor. EMBO J (2002) 2.90
Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana. Plant Cell (2008) 2.87
Move on up, it's time for change--mobile signals controlling photoperiod-dependent flowering. Genes Dev (2007) 2.82
Simultaneous alignment of short reads against multiple genomes. Genome Biol (2009) 2.79
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell (2011) 2.77
The RETINOBLASTOMA-RELATED gene regulates stem cell maintenance in Arabidopsis roots. Cell (2005) 2.77
Diversity of flowering responses in wild Arabidopsis thaliana strains. PLoS Genet (2005) 2.74
Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2008) 2.74
Launching eLife, Part 1. Elife (2012) 2.72
Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nat Genet (2012) 2.70
Potent induction of Arabidopsis thaliana flowering by elevated growth temperature. PLoS Genet (2006) 2.69
Gene-expression analysis and network discovery using Genevestigator. Trends Plant Sci (2005) 2.69
A previously unknown maltose transporter essential for starch degradation in leaves. Science (2004) 2.68
Reference-guided assembly of four diverse Arabidopsis thaliana genomes. Proc Natl Acad Sci U S A (2011) 2.67
Expression and disruption of the Arabidopsis TOR (target of rapamycin) gene. Proc Natl Acad Sci U S A (2002) 2.62
Arabidopsis MSI1 is a component of the MEA/FIE Polycomb group complex and required for seed development. EMBO J (2003) 2.56
Structure-function analysis of the presumptive Arabidopsis auxin permease AUX1. Plant Cell (2004) 2.55
Hybrid necrosis: autoimmunity as a potential gene-flow barrier in plant species. Nat Rev Genet (2007) 2.55
Arabidopsis reactome: a foundation knowledgebase for plant systems biology. Plant Cell (2008) 2.50
Exit from proliferation during leaf development in Arabidopsis thaliana: a not-so-gradual process. Dev Cell (2012) 2.49
Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. Proc Natl Acad Sci U S A (2005) 2.47
Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis. Plant Physiol (2005) 2.46
Continuous individual support of smoking cessation using text messaging: a pilot experimental study. Nicotine Tob Res (2009) 2.46
The metabolic signature related to high plant growth rate in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2007) 2.44
Selective epigenetic control of retrotransposition in Arabidopsis. Nature (2009) 2.41
Nitric oxide represses the Arabidopsis floral transition. Science (2004) 2.41