Introducing intron locus cox1i624 for phylogenetic analyses in Bryophytes: on the issue of Takakia as sister genus to all other extant mosses.

PubWeight™: 0.80‹?›

🔗 View Article (PMID 20473660)

Published in J Mol Evol on May 16, 2010

Authors

Ute Volkmar1, Volker Knoop

Author Affiliations

1: IZMB-Institut für Zelluläre und Molekulare Botanik, Abt. Molekulare Evolution, Universität Bonn, Kirschallee 1, Bonn, Germany. ute.volkmar@uni-bonn.de

Articles cited by this

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol (2007) 168.76

MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (2003) 130.85

Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests. Syst Biol (2004) 22.36

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J Mol Biol (1990) 10.85

Retracted TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol (2004) 8.78

Bayesian phylogenetic analysis of combined data. Syst Biol (2004) 6.89

The closest living relatives of land plants. Science (2001) 3.71

Representation of the secondary and tertiary structure of group I introns. Nat Struct Biol (1994) 3.13

Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome. J Mol Biol (1992) 3.11

The deepest divergences in land plants inferred from phylogenomic evidence. Proc Natl Acad Sci U S A (2006) 3.10

The gain of three mitochondrial introns identifies liverworts as the earliest land plants. Nature (1998) 2.54

Dating the early evolution of plants: detection and molecular clock analyses of orthologs. Mol Genet Genomics (2007) 1.39

The mitochondrial genome of the moss Physcomitrella patens sheds new light on mitochondrial evolution in land plants. Mol Biol Evol (2006) 1.14

Distribution of introns in the mitochondrial gene nad1 in land plants: phylogenetic and molecular evolutionary implications. Mol Phylogenet Evol (2004) 1.14

Ancestors of trans-splicing mitochondrial introns support serial sister group relationships of hornworts and mosses with vascular plants. Mol Biol Evol (2004) 1.12

The complete mitochondrial genome sequence of the hornwort Megaceros aenigmaticus shows a mixed mode of conservative yet dynamic evolution in early land plant mitochondrial genomes. J Mol Evol (2009) 0.99

Molecular evolution of the trnTUGU-trnFGAA region in Bryophytes. Plant Biol (Stuttg) (2004) 0.94

Group I introns in the liverwort mitochondrial genome: the gene coding for subunit 1 of cytochrome oxidase shares five intron positions with its fungal counterparts. Nucleic Acids Res (1993) 0.93

Evolution of a pseudogene: exclusive survival of a functional mitochondrial nad7 gene supports Haplomitrium as the earliest liverwort lineage and proposes a secondary loss of RNA editing in Marchantiidae. Mol Biol Evol (2007) 0.93

Mosses share mitochondrial group II introns with flowering plants, not with liverworts. Mol Genet Genomics (2001) 0.91

Anatomy and ultrastructure of the sporophyte of Takakia ceratophylla (Bryophyta). Am J Bot (1997) 0.88

The mitochondrial nad2 gene as a novel marker locus for phylogenetic analysis of early land plants: a comparative analysis in mosses. Mol Phylogenet Evol (2001) 0.82

Phylogeny of the Polytrichales (Bryophyta) based on simultaneous analysis of molecular and morphological data. Mol Phylogenet Evol (2004) 0.82

Tracing plant Mitochondrial DNA evolution: rearrangements of the ancient mitochondrial gene cluster trnA-trnT-nad7 in liverwort phylogeny. J Mol Evol (2008) 0.80

The phylogeny of mosses - addressing open issues with a new mitochondrial locus: group I intron cobi420. Mol Phylogenet Evol (2009) 0.79

Articles by these authors

The deepest divergences in land plants inferred from phylogenomic evidence. Proc Natl Acad Sci U S A (2006) 3.10

A hypothesis on the identification of the editing enzyme in plant organelles. FEBS Lett (2007) 1.73

Primary sooty mangabey simian immunodeficiency virus and human immunodeficiency virus type 2 nef alleles modulate cell surface expression of various human receptors and enhance viral infectivity and replication. J Virol (2005) 1.21

A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii. Nucleic Acids Res (2009) 1.19

Extreme RNA editing in coding islands and abundant microsatellites in repeat sequences of Selaginella moellendorffii mitochondria: the root of frequent plant mtDNA recombination in early tracheophytes. Genome Biol Evol (2011) 1.14

Organellar RNA editing and plant-specific extensions of pentatricopeptide repeat proteins in jungermanniid but not in marchantiid liverworts. Mol Biol Evol (2008) 1.13

Ancestors of trans-splicing mitochondrial introns support serial sister group relationships of hornworts and mosses with vascular plants. Mol Biol Evol (2004) 1.12

RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal. Mol Genet Genomics (2009) 1.09

A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii. Nucleic Acids Res (2010) 1.09

Nef proteins from simian immunodeficiency virus-infected chimpanzees interact with p21-activated kinase 2 and modulate cell surface expression of various human receptors. J Virol (2004) 1.05

Molecular characterization of a seed transmitted clavicipitaceous fungus occurring on dicotyledoneous plants (Convolvulaceae). Planta (2006) 1.04

A root-expressed magnesium transporter of the MRS2/MGT gene family in Arabidopsis thaliana allows for growth in low-Mg2+ environments. Plant Cell (2009) 1.03

Slugs' last meals: molecular identification of sequestered chloroplasts from different algal origins in Sacoglossa (Opisthobranchia, Gastropoda). Mol Ecol Resour (2010) 1.01

PREPACT 2.0: Predicting C-to-U and U-to-C RNA Editing in Organelle Genome Sequences with Multiple References and Curated RNA Editing Annotation. Bioinform Biol Insights (2013) 0.94

Evolution of a pseudogene: exclusive survival of a functional mitochondrial nad7 gene supports Haplomitrium as the earliest liverwort lineage and proposes a secondary loss of RNA editing in Marchantiidae. Mol Biol Evol (2007) 0.93

Clavicipitaceous fungi associated with ergoline alkaloid-containing convolvulaceae. J Nat Prod (2007) 0.92

Assigning DYW-type PPR proteins to RNA editing sites in the funariid mosses Physcomitrella patens and Funaria hygrometrica. Plant J (2011) 0.91

Introducing the plant RNA editing prediction and analysis computer tool PREPACT and an update on RNA editing site nomenclature. Curr Genet (2009) 0.91

Nuclear DYW-type PPR gene families diversify with increasing RNA editing frequencies in liverwort and moss mitochondria. J Mol Evol (2012) 0.91

Plant-type mitochondrial RNA editing in the protist Naegleria gruberi. RNA (2011) 0.86

A DYW-protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype. Plant J (2013) 0.84

Magnesium deficiency phenotypes upon multiple knockout of Arabidopsis thaliana MRS2 clade B genes can be ameliorated by concomitantly reduced calcium supply. Plant Cell Physiol (2013) 0.83

Divergent intron conservation in the mitochondrial nad2 gene: signatures for the three bryophyte classes (mosses, liverworts, and hornworts) and the lycophytes. J Mol Evol (2002) 0.81

Tracing plant Mitochondrial DNA evolution: rearrangements of the ancient mitochondrial gene cluster trnA-trnT-nad7 in liverwort phylogeny. J Mol Evol (2008) 0.80

The phylogeny of mosses - addressing open issues with a new mitochondrial locus: group I intron cobi420. Mol Phylogenet Evol (2009) 0.79

Membrane protein interactions between different Arabidopsis thaliana MRS2-type magnesium transporters are highly permissive. Biochim Biophys Acta (2013) 0.77