Published in BMC Genomics on June 24, 2010
Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol (2011) 53.86
De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweet potato (Ipomoea batatas). BMC Genomics (2010) 3.32
Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics (2011) 2.88
Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds. BMC Genomics (2011) 2.84
Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. BMC Genomics (2011) 2.53
De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.). BMC Genomics (2012) 2.11
Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq. BMC Genomics (2012) 2.07
De novo transcriptome sequencing in Anopheles funestus using Illumina RNA-seq technology. PLoS One (2010) 1.95
Transcriptomics of the bed bug (Cimex lectularius). PLoS One (2011) 1.76
De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics. Genome Res (2011) 1.70
De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity. BMC Genomics (2011) 1.57
Transcriptome sequencing and annotation of the microalgae Dunaliella tertiolecta: pathway description and gene discovery for production of next-generation biofuels. BMC Genomics (2011) 1.55
Global analysis of the transcriptional response of whitefly to tomato yellow leaf curl China virus reveals the relationship of coevolved adaptations. J Virol (2011) 1.54
Pyrosequencing the transcriptome of the greenhouse whitefly, Trialeurodes vaporariorum reveals multiple transcripts encoding insecticide targets and detoxifying enzymes. BMC Genomics (2011) 1.53
De novo sequence assembly and characterization of the floral transcriptome in cross- and self-fertilizing plants. BMC Genomics (2011) 1.49
Generation of a Transcriptome in a Model Lepidopteran Pest, Heliothis virescens, Using Multiple Sequencing Strategies for Profiling Midgut Gene Expression. PLoS One (2015) 1.48
De novo sequencing, assembly and characterization of antennal transcriptome of Anomala corpulenta Motschulsky (Coleoptera: Rutelidae). PLoS One (2014) 1.46
De novo transcriptome assembly and SNP discovery in the wing polymorphic salt marsh beetle Pogonus chalceus (Coleoptera, Carabidae). PLoS One (2012) 1.45
De novo sequencing and characterization of the floral transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae). PLoS One (2012) 1.45
Transcriptome sequencing and characterization for the sea cucumber Apostichopus japonicus (Selenka, 1867). PLoS One (2012) 1.43
Transcriptome analysis of the oriental fruit fly (Bactrocera dorsalis). PLoS One (2011) 1.43
Transcriptome analysis and comparison reveal divergence between two invasive whitefly cryptic species. BMC Genomics (2011) 1.31
De novo assembly and characterization of fruit transcriptome in Litchi chinensis Sonn and analysis of differentially regulated genes in fruit in response to shading. BMC Genomics (2013) 1.30
Transcriptome-based discovery of pathways and genes related to resistance against Fusarium head blight in wheat landrace Wangshuibai. BMC Genomics (2013) 1.27
Nutrigenomics in honey bees: digital gene expression analysis of pollen's nutritive effects on healthy and varroa-parasitized bees. BMC Genomics (2011) 1.20
De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments. BMC Genomics (2012) 1.19
Cutoffs and k-mers: implications from a transcriptome study in allopolyploid plants. BMC Genomics (2012) 1.17
Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa. Front Zool (2012) 1.17
A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly. BMC Genomics (2013) 1.16
A dual platform approach to transcript discovery for the planarian Schmidtea mediterranea to establish RNAseq for stem cell and regeneration biology. PLoS One (2010) 1.16
Analysis of transcriptome differences between resistant and susceptible strains of the citrus red mite Panonychus citri (Acari: Tetranychidae). PLoS One (2011) 1.15
Transcriptome sequencing of Zhikong scallop (Chlamys farreri) and comparative transcriptomic analysis with Yesso scallop (Patinopecten yessoensis). PLoS One (2013) 1.13
De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. BMC Genomics (2013) 1.13
High-throughput sequencing to reveal genes involved in reproduction and development in Bactrocera dorsalis (Diptera: Tephritidae). PLoS One (2012) 1.11
Transcriptome analysis of leaf tissue of Raphanus sativus by RNA sequencing. PLoS One (2013) 1.11
Parallel histories of horizontal gene transfer facilitated extreme reduction of endosymbiont genomes in sap-feeding insects. Mol Biol Evol (2014) 1.11
Transcriptome deep-sequencing and clustering of expressed isoforms from Favia corals. BMC Genomics (2013) 1.07
Transcriptome characterization of the South African abalone Haliotis midae using sequencing-by-synthesis. BMC Res Notes (2011) 1.07
Pyrosequencing the Bemisia tabaci transcriptome reveals a highly diverse bacterial community and a robust system for insecticide resistance. PLoS One (2012) 1.07
De novo characterization of the Chinese fir (Cunninghamia lanceolata) transcriptome and analysis of candidate genes involved in cellulose and lignin biosynthesis. BMC Genomics (2012) 1.06
Transcript profiling reveals complex auxin signalling pathway and transcription regulation involved in dedifferentiation and redifferentiation during somatic embryogenesis in cotton. BMC Plant Biol (2012) 1.03
RNA-Seq analysis of Cocos nucifera: transcriptome sequencing and de novo assembly for subsequent functional genomics approaches. PLoS One (2013) 1.02
Deep insight into the Ganoderma lucidum by comprehensive analysis of its transcriptome. PLoS One (2012) 1.01
Analysis of a native whitefly transcriptome and its sequence divergence with two invasive whitefly species. BMC Genomics (2012) 1.01
Discovery of retroviral homologs in bats: implications for the origin of mammalian gammaretroviruses. J Virol (2012) 1.00
Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish. Plant Cell Rep (2012) 1.00
Transcriptome sequencing and de novo analysis of a cytoplasmic male sterile line and its near-isogenic restorer line in chili pepper (Capsicum annuum L.). PLoS One (2013) 1.00
Transcriptomic analysis of the salivary glands of an invasive whitefly. PLoS One (2012) 0.99
Global transcriptome profiling of the pine shoot beetle, Tomicus yunnanensis (Coleoptera: Scolytinae). PLoS One (2012) 0.99
De novo assembly, characterization and functional annotation of pineapple fruit transcriptome through massively parallel sequencing. PLoS One (2012) 0.99
Sequencing and de novo assembly of the western tarnished plant bug (Lygus hesperus) transcriptome. PLoS One (2013) 0.99
De Novo transcriptome sequencing reveals important molecular networks and metabolic pathways of the plant, Chlorophytum borivilianum. PLoS One (2013) 0.98
Floral transcriptome sequencing for SSR marker development and linkage map construction in the tea plant (Camellia sinensis). PLoS One (2013) 0.97
Transcriptome analysis of the Asian honey bee Apis cerana cerana. PLoS One (2012) 0.97
Global analysis of gene expression profiles in developing physic nut (Jatropha curcas L.) seeds. PLoS One (2012) 0.97
Transcriptome analysis of Houttuynia cordata Thunb. by Illumina paired-end RNA sequencing and SSR marker discovery. PLoS One (2014) 0.94
De novo assembly and characterization of the fruit transcriptome of Chinese jujube (Ziziphus jujuba Mill.) Using 454 pyrosequencing and the development of novel tri-nucleotide SSR markers. PLoS One (2014) 0.94
The characteristics and expression profiles of the mitochondrial genome for the Mediterranean species of the Bemisia tabaci complex. BMC Genomics (2013) 0.93
Comparative analyses of two Geraniaceae transcriptomes using next-generation sequencing. BMC Plant Biol (2013) 0.93
Metabolic Coevolution in the Bacterial Symbiosis of Whiteflies and Related Plant Sap-Feeding Insects. Genome Biol Evol (2015) 0.93
Transcriptome analysis of chlorantraniliprole resistance development in the diamondback moth Plutella xylostella. PLoS One (2013) 0.92
De novo characterization of Japanese scallop Mizuhopecten yessoensis transcriptome and analysis of its gene expression following cadmium exposure. PLoS One (2013) 0.92
Transcriptome profiling of the whitefly Bemisia tabaci reveals stage-specific gene expression signatures for thiamethoxam resistance. Insect Mol Biol (2013) 0.92
De novo leaf and root transcriptome analysis identified novel genes involved in steroidal sapogenin biosynthesis in Asparagus racemosus. BMC Genomics (2014) 0.92
Transcriptome sequencing and comparative analysis of Saccharina japonica (Laminariales, Phaeophyceae) under blue light induction. PLoS One (2012) 0.91
De novo foliar transcriptome of Chenopodium amaranticolor and analysis of its gene expression during virus-induced hypersensitive response. PLoS One (2012) 0.90
PcarnBase: development of a transcriptomic database for the brain coral Platygyra carnosus. Mar Biotechnol (NY) (2012) 0.90
Exploring the midgut transcriptome and brush border membrane vesicle proteome of the rice stem borer, Chilo suppressalis (Walker). PLoS One (2012) 0.90
Transcript assembly and quantification by RNA-Seq reveals differentially expressed genes between soft-endocarp and hard-endocarp hawthorns. PLoS One (2013) 0.88
Transcriptomic and proteomic responses of sweetpotato whitefly, Bemisia tabaci, to thiamethoxam. PLoS One (2013) 0.88
Characterization of head transcriptome and analysis of gene expression involved in caste differentiation and aggression in Odontotermes formosanus (Shiraki). PLoS One (2012) 0.88
Large scale in-silico identification and characterization of simple sequence repeats (SSRs) from de novo assembled transcriptome of Catharanthus roseus (L.) G. Don. Plant Cell Rep (2014) 0.88
Genome reduction and potential metabolic complementation of the dual endosymbionts in the whitefly Bemisia tabaci. BMC Genomics (2015) 0.88
Comparative transcript profiling of the fertile and sterile flower buds of pol CMS in B. napus. BMC Genomics (2014) 0.87
Discovery of genes related to witches broom disease in Paulownia tomentosa × Paulownia fortunei by a De Novo assembled transcriptome. PLoS One (2013) 0.87
Deep-sequencing transcriptome analysis of low temperature perception in a desert tree, Populus euphratica. BMC Genomics (2014) 0.86
Chemosensory genes identified in the antennal transcriptome of the blowfly Calliphora stygia. BMC Genomics (2015) 0.86
Characterization of the global transcriptome for Pyropia haitanensis (Bangiales, Rhodophyta) and development of cSSR markers. BMC Genomics (2013) 0.86
Transcriptome Analysis and Identification of Differentially Expressed Transcripts of Immune-Related Genes in Spleen of Gosling and Adult Goose. Int J Mol Sci (2015) 0.85
Detailed transcriptome description of the neglected cestode Taenia multiceps. PLoS One (2012) 0.85
De novo assembly, gene annotation, and marker discovery in stored-product pest Liposcelis entomophila (Enderlein) using transcriptome sequences. PLoS One (2013) 0.85
Transcriptomic dissection of sexual differences in Bemisia tabaci, an invasive agricultural pest worldwide. Sci Rep (2014) 0.85
Emerging strategies for RNA interference (RNAi) applications in insects. Bioengineered (2014) 0.85
De novo transcriptome of the Hemimetabolous German cockroach (Blattella germanica). PLoS One (2014) 0.85
Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys. BMC Genomics (2014) 0.84
siRNA machinery in whitefly (Bemisia tabaci). PLoS One (2013) 0.84
Development of reference transcriptomes for the major field insect pests of cowpea: a toolbox for insect pest management approaches in west Africa. PLoS One (2013) 0.84
Transcriptome profiling of fruit development and maturation in Chinese white pear (Pyrus bretschneideri Rehd). BMC Genomics (2013) 0.84
Transcriptome analysis of Salicornia europaea under saline conditions revealed the adaptive primary metabolic pathways as early events to facilitate salt adaptation. PLoS One (2013) 0.83
Isolation and characterization of 46 novel polymorphic EST-simple sequence repeats (SSR) markers in two Sinipercine Fishes (Siniperca) and cross-species amplification. Int J Mol Sci (2012) 0.83
De novo assembly of mud loach (Misgurnus anguillicaudatus) skin transcriptome to identify putative genes involved in immunity and epidermal mucus secretion. PLoS One (2013) 0.83
RNA sequencing analysis of the gametophyte transcriptome from the liverwort, Marchantia polymorpha. PLoS One (2014) 0.83
Genomic insights into the serine protease gene family and expression profile analysis in the planthopper, Nilaparvata lugens. BMC Genomics (2014) 0.83
Nutrigenomics in Arma chinensis: transcriptome analysis of Arma chinensis fed on artificial diet and Chinese oak silk moth Antheraea pernyi pupae. PLoS One (2013) 0.82
Global Transcriptional Analysis of Olfactory Genes in the Head of Pine Shoot Beetle, Tomicus yunnanensis. Comp Funct Genomics (2012) 0.82
Analysis of the transcriptome of blowfly Chrysomya megacephala (Fabricius) larvae in responses to different edible oils. PLoS One (2013) 0.82
Analysis of whitefly transcriptional responses to Beauveria bassiana infection reveals new insights into insect-fungus interactions. PLoS One (2013) 0.82
Next-generation transcriptome sequencing, SNP discovery and validation in four market classes of peanut, Arachis hypogaea L. Mol Genet Genomics (2015) 0.82
Analysis of the transcriptional differences between indigenous and invasive whiteflies reveals possible mechanisms of whitefly invasion. PLoS One (2013) 0.82
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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat Genet (2008) 24.51
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Deep sequencing of the zebrafish transcriptome response to mycobacterium infection. Mol Immunol (2009) 2.42
Characterizing the mouse ES cell transcriptome with Illumina sequencing. Genomics (2008) 2.09
Global relationships of Bemisia tabaci (Hemiptera: Aleyrodidae) revealed using Bayesian analysis of mitochondrial COI DNA sequences. Mol Phylogenet Evol (2007) 1.81
Biotypes B and Q of Bemisia tabaci and their relevance to neonicotinoid and pyriproxyfen resistance. Arch Insect Biochem Physiol (2005) 1.69
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Whitefly (Bemisia tabaci) genome project: analysis of sequenced clones from egg, instar, and adult (viruliferous and non-viruliferous) cDNA libraries. BMC Genomics (2006) 1.34
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Parasitization by the wasp Eretmocerus mundus induces transcription of genes related to immune response and symbiotic bacteria proliferation in the whitefly Bemisia tabaci. BMC Genomics (2008) 1.20
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The nicotinic acetylcholine receptor gene family of the silkworm, Bombyx mori. BMC Genomics (2007) 1.16
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Transcriptome analysis of the brown planthopper Nilaparvata lugens. PLoS One (2010) 2.00
Vector-virus mutualism accelerates population increase of an invasive whitefly. PLoS One (2007) 1.91
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Global analysis of the transcriptional response of whitefly to tomato yellow leaf curl China virus reveals the relationship of coevolved adaptations. J Virol (2011) 1.54
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Transcriptome analysis and comparison reveal divergence between two invasive whitefly cryptic species. BMC Genomics (2011) 1.31
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Chitin synthase 1 gene and its two alternative splicing variants from two sap-sucking insects, Nilaparvata lugens and Laodelphax striatellus (Hemiptera: Delphacidae). Insect Biochem Mol Biol (2012) 1.03
RA-inducible gene-I induction augments STAT1 activation to inhibit leukemia cell proliferation. Proc Natl Acad Sci U S A (2011) 1.03
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Dynamic interactions between Bombyx mori nucleopolyhedrovirus and its host cells revealed by transcriptome analysis. J Virol (2012) 1.01
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Analysis of a native whitefly transcriptome and its sequence divergence with two invasive whitefly species. BMC Genomics (2012) 1.01
Transcriptomic analysis of the salivary glands of an invasive whitefly. PLoS One (2012) 0.99
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De novo intestine-specific transcriptome of the brown planthopper Nilaparvata lugens revealed potential functions in digestion, detoxification and immune response. Genomics (2012) 0.96
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The characteristics and expression profiles of the mitochondrial genome for the Mediterranean species of the Bemisia tabaci complex. BMC Genomics (2013) 0.93
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Genomic insights into the glutathione S-transferase gene family of two rice planthoppers, Nilaparvata lugens (Stål) and Sogatella furcifera (Horváth) (Hemiptera: Delphacidae). PLoS One (2013) 0.92
Trade-offs between constitutive and induced resistance in wild crucifers shown by a natural, but not an artificial, elicitor. Oecologia (2008) 0.92
Preferential eradication of acute myelogenous leukemia stem cells by fenretinide. Proc Natl Acad Sci U S A (2013) 0.92
Molecular characterization of the flightin gene in the wing-dimorphic planthopper, Nilaparvata lugens, and its evolution in Pancrustacea. Insect Biochem Mol Biol (2013) 0.91
An invasive whitefly feeding on a virus-infected plant increased its egg production and realized fecundity. PLoS One (2010) 0.91
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Characterization of a Baculovirus newly isolated from the tea slug moth, Iragoidae fasciata. J Microbiol (2009) 0.91
RNA interference of NADPH-cytochrome P450 reductase of the rice brown planthopper, Nilaparvata lugens, increases susceptibility to insecticides. Pest Manag Sci (2014) 0.91
The genome- and transcriptome-wide analysis of innate immunity in the brown planthopper, Nilaparvata lugens. BMC Genomics (2013) 0.91
Differentially expressed genes in resistant and susceptible Bombyx mori strains infected with a densonucleosis virus. Insect Biochem Mol Biol (2008) 0.90
Synergistic effect of bortezomib and valproic acid treatment on the proliferation and apoptosis of acute myeloid leukemia and myelodysplastic syndrome cells. Ann Hematol (2011) 0.88
Direct interactions between bidensovirus BmDNV-Z proteins and midgut proteins from the virus target Bombyx mori. FEBS J (2013) 0.88
Characterization of a newly discovered symbiont of the whitefly Bemisia tabaci (Hemiptera: Aleyrodidae). Appl Environ Microbiol (2012) 0.88
Bombyx mori nucleopolyhedrovirus ORF9 is a gene involved in the budded virus production and infectivity. J Gen Virol (2009) 0.87
Molecular characterization of DSC1 orthologs in invertebrate species. Insect Biochem Mol Biol (2012) 0.86
Activation of the PI3K/AKT/mTOR pathway in diffuse large B cell lymphoma: clinical significance and inhibitory effect of rituximab. Ann Hematol (2013) 0.85
Expression and functional characterisation of a soluble form of Tomato yellow leaf curl virus coat protein. Pest Manag Sci (2014) 0.85
Molecular characterization of a sodium channel gene from the Silkworm Bombyx mori. Insect Biochem Mol Biol (2008) 0.84
Draft genome sequence of "Candidatus Hamiltonella defensa," an endosymbiont of the whitefly Bemisia tabaci. J Bacteriol (2012) 0.84
Enhanced vitellogenesis in a whitefly via feeding on a begomovirus-infected plant. PLoS One (2012) 0.84
Triazophos up-regulated gene expression in the female brown planthopper, Nilaparvata lugens. J Insect Physiol (2010) 0.84
Performance of urinary NGAL and L-FABP in predicting acute kidney injury and subsequent renal recovery: a cohort study based on major surgeries. Clin Chem Lab Med (2014) 0.84
Involvement of Bombyx mori nucleopolyhedrovirus ORF41 (Bm41) in BV production and ODV envelopment. Virology (2009) 0.83
Molecular characterization and oxidative stress response of an intracellular Cu/Zn superoxide dismutase (CuZnSOD) of the whitefly, Bemisia tabaci. Arch Insect Biochem Physiol (2011) 0.83
An immune-induced reeler protein is involved in the Bombyx mori melanization cascade. Insect Biochem Mol Biol (2011) 0.83
Genomic insights into the serine protease gene family and expression profile analysis in the planthopper, Nilaparvata lugens. BMC Genomics (2014) 0.83
Pregnancies in patients with chronic myeloid leukemia treated with tyrosine kinase inhibitor. Leuk Res (2013) 0.83
A new continuous cell line from larval ovaries of silkworm, Bombyx mori. In Vitro Cell Dev Biol Anim (2009) 0.83
Characterization of Bombyx mori nucleopolyhedrovirus with a deletion of bm118. Virus Res (2008) 0.83
Sprays of emulsifiable Beauveria bassiana formulation are ovicidal towards Tetranychus urticae (Acari: Tetranychidae) at various regimes of temperature and humidity. Exp Appl Acarol (2008) 0.82
A baculovirus isolated from wild silkworm encompasses the host ranges of Bombyx mori nucleopolyhedrosis virus and Autographa californica multiple nucleopolyhedrovirus in cultured cells. J Gen Virol (2012) 0.82
Alantolactone induces apoptosis in chronic myelogenous leukemia sensitive or resistant to imatinib through NF-κB inhibition and Bcr/Abl protein deletion. Apoptosis (2013) 0.82
Analysis of whitefly transcriptional responses to Beauveria bassiana infection reveals new insights into insect-fungus interactions. PLoS One (2013) 0.82
Cloning, expression and characterization of mitochondrial manganese superoxide dismutase from the Whitefly, Bemisia tabaci. Int J Mol Sci (2013) 0.82
Open reading frame 60 of the Bombyx mori nucleopolyhedrovirus plays a role in budded virus production. Virus Res (2010) 0.82
Vitamin D receptor BsmI polymorphism and osteoporosis risk: a meta-analysis from 26 studies. Genet Test Mol Biomarkers (2012) 0.82
Analysis of the transcriptional differences between indigenous and invasive whiteflies reveals possible mechanisms of whitefly invasion. PLoS One (2013) 0.82
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The ionotropic γ-aminobutyric acid receptor gene family of the silkworm, Bombyx mori. Genome (2010) 0.81
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