Published in Nat Biotechnol on July 01, 2010
Development of data representation standards by the human proteome organization proteomics standards initiative. J Am Med Inform Assoc (2015) 0.96
The mzqLibrary--An open source Java library supporting the HUPO-PSI quantitative proteomics standard. Proteomics (2015) 0.84
Controlled vocabularies and ontologies in proteomics: overview, principles and practice. Biochim Biophys Acta (2013) 0.83
The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards. Mol Cell Proteomics (2011) 0.83
A tutorial for software development in quantitative proteomics using PSI standard formats. Biochim Biophys Acta (2013) 0.83
Interlaboratory studies and initiatives developing standards for proteomics. Proteomics (2013) 0.79
The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol (2007) 10.24
Guidelines for reporting the use of mass spectrometry in proteomics. Nat Biotechnol (2008) 1.90
Guidelines for reporting the use of mass spectrometry informatics in proteomics. Nat Biotechnol (2008) 1.60
Guidelines for reporting the use of gel electrophoresis in proteomics. Nat Biotechnol (2008) 1.54
A common open representation of mass spectrometry data and its application to proteomics research. Nat Biotechnol (2004) 11.42
The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol (2007) 10.24
Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell (2012) 6.83
Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations. Nucleic Acids Res (2010) 4.62
Cell-free formation of RNA granules: bound RNAs identify features and components of cellular assemblies. Cell (2012) 4.37
Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France. Proteomics (2007) 3.69
A top-down systems biology view of microbiome-mammalian metabolic interactions in a mouse model. Mol Syst Biol (2007) 3.68
A systematic approach to modeling, capturing, and disseminating proteomics experimental data. Nat Biotechnol (2003) 3.57
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. Nat Biotechnol (2007) 3.55
A strategy capitalizing on synergies: the Reporting Structure for Biological Investigation (RSBI) working group. OMICS (2006) 3.51
A proposed framework for the description of plant metabolomics experiments and their results. Nat Biotechnol (2004) 3.32
A database of mass spectrometric assays for the yeast proteome. Nat Methods (2008) 3.19
A gain-of-function mutation in DHT synthesis in castration-resistant prostate cancer. Cell (2013) 2.94
The mzIdentML data standard for mass spectrometry-based proteomics results. Mol Cell Proteomics (2012) 2.82
Characteristics, beliefs, and practices of community clinicians trained to provide manual-guided therapy for substance abusers. J Subst Abuse Treat (2002) 2.70
Global translational responses to oxidative stress impact upon multiple levels of protein synthesis. J Biol Chem (2006) 2.66
RNA interference in Lepidoptera: an overview of successful and unsuccessful studies and implications for experimental design. J Insect Physiol (2010) 2.47
Proteomic analysis of integrin-associated complexes identifies RCC2 as a dual regulator of Rac1 and Arf6. Sci Signal (2009) 2.26
Global gene expression profiling reveals widespread yet distinctive translational responses to different eukaryotic translation initiation factor 2B-targeting stress pathways. Mol Cell Biol (2005) 2.13
Heterogeneity of airways mucus: variations in the amounts and glycoforms of the major oligomeric mucins MUC5AC and MUC5B. Biochem J (2002) 2.02
Transcranial magnetic stimulation of left temporoparietal cortex and medication-resistant auditory hallucinations. Arch Gen Psychiatry (2003) 1.81
Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis. PLoS One (2008) 1.68
The PSI semantic validator: a framework to check MIAPE compliance of proteomics data. Proteomics (2009) 1.62
Tracheobronchial air-liquid interface cell culture: a model for innate mucosal defense of the upper airways? Am J Physiol Lung Cell Mol Physiol (2008) 1.55
Temporoparietal transcranial magnetic stimulation for auditory hallucinations: safety, efficacy and moderators in a fifty patient sample. Biol Psychiatry (2005) 1.55
Guidelines for reporting the use of gel electrophoresis in proteomics. Nat Biotechnol (2008) 1.54
Chimeric protein complexes in hybrid species generate novel phenotypes. PLoS Genet (2013) 1.45
jmzIdentML API: A Java interface to the mzIdentML standard for peptide and protein identification data. Proteomics (2012) 1.44
Critical role of phosphoinositide 3-kinase cascade in adipogenesis of human mesenchymal stem cells. Mol Cell Biochem (2007) 1.39
Priority actions to improve the care of persons with co-occurring substance abuse and other mental disorders: a call to action. Biol Psychiatry (2004) 1.39
Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines. Proteomics (2009) 1.37
Performance evaluation of existing de novo sequencing algorithms. J Proteome Res (2006) 1.36
The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation. Genome Biol (2008) 1.35
PEDRo: a database for storing, searching and disseminating experimental proteomics data. BMC Genomics (2004) 1.34
The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary. Database (Oxford) (2013) 1.31
Sulfur amino acids regulate translational capacity and metabolic homeostasis through modulation of tRNA thiolation. Cell (2013) 1.30
Comparative genome analysis across a kingdom of eukaryotic organisms: specialization and diversification in the fungi. Genome Res (2007) 1.28
The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics. Mol Cell Proteomics (2013) 1.28
Enhancement of amino acid detection and quantification by electrospray ionization mass spectrometry. Anal Chem (2006) 1.27
A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis. OMICS (2012) 1.25
SBRML: a markup language for associating systems biology data with models. Bioinformatics (2010) 1.24
GIMS: an integrated data storage and analysis environment for genomic and functional data. Yeast (2003) 1.22
Nuclear export inhibition through covalent conjugation and hydrolysis of Leptomycin B by CRM1. Proc Natl Acad Sci U S A (2013) 1.21
Multisite effectiveness trials of treatments for substance abuse and co-occurring problems: have we chosen the best designs? J Subst Abuse Treat (2010) 1.21
The reduction potential of the active site disulfides of human protein disulfide isomerase limits oxidation of the enzyme by Ero1α. J Biol Chem (2010) 1.20
Facilitating the development of controlled vocabularies for metabolomics technologies with text mining. BMC Bioinformatics (2008) 1.20
The PSI formal document process and its implementation on the PSI website. Proteomics (2007) 1.20
Remote monitoring of implantable cardioverter defibrillators versus quarterly device interrogations in clinic: results from a randomized pilot clinical trial. J Cardiovasc Electrophysiol (2009) 1.19
Amyloidogenic nature of spider silk. Eur J Biochem (2002) 1.18
Neural network prediction of peptide separation in strong anion exchange chromatography. Bioinformatics (2006) 1.17
Naltrexone and disulfiram in patients with alcohol dependence and comorbid psychiatric disorders. Biol Psychiatry (2005) 1.15
Type III effector VopC mediates invasion for Vibrio species. Cell Rep (2012) 1.14
FDRAnalysis: a tool for the integrated analysis of tandem mass spectrometry identification results from multiple search engines. J Proteome Res (2011) 1.14
Systematic integration of experimental data and models in systems biology. BMC Bioinformatics (2010) 1.13
Evidence of altered phosphatidylcholine metabolism in Alzheimer's disease. Neurobiol Aging (2013) 1.12
MiR-183/-96/-182 cluster is up-regulated in most breast cancers and increases cell proliferation and migration. Breast Cancer Res (2014) 1.11
Deficiency of growth differentiation factor 3 protects against diet-induced obesity by selectively acting on white adipose. Mol Endocrinol (2008) 1.11
Structure of Ca2+-bound S100A4 and its interaction with peptides derived from nonmuscle myosin-IIA. Biochemistry (2008) 1.10
A software toolkit and interface for performing stable isotope labeling and top3 quantification using Progenesis LC-MS. OMICS (2012) 1.09
Quantitative proteomics investigation of pancreatic intraepithelial neoplasia. Electrophoresis (2009) 1.08
Prediction of missed cleavage sites in tryptic peptides aids protein identification in proteomics. J Proteome Res (2007) 1.07
XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments. Genome Biol (2010) 1.07
Enzyme kinetics informatics: from instrument to browser. FEBS J (2010) 1.06
Proteomic analysis of integrin adhesion complexes. Sci Signal (2011) 1.06
A new TCM formula FTZ lowers serum cholesterol by regulating HMG-CoA reductase and CYP7A1 in hyperlipidemic rats. J Ethnopharmacol (2011) 1.05
A database for curating the associations between killer cell immunoglobulin-like receptors and diseases in worldwide populations. Database (Oxford) (2013) 1.05
An integrin-alpha4-14-3-3zeta-paxillin ternary complex mediates localised Cdc42 activity and accelerates cell migration. J Cell Sci (2009) 1.04
Incidence and complete molecular characterization of glucose-6-phosphate dehydrogenase deficiency in the Guangxi Zhuang autonomous region of southern China: description of four novel mutations. Haematologica (2006) 1.04
Rapid optimization of MRM-MS instrument parameters by subtle alteration of precursor and product m/z targets. J Proteome Res (2009) 1.03
ISPIDER Central: an integrated database web-server for proteomics. Nucleic Acids Res (2008) 1.03
Phenothiazines inhibit S100A4 function by inducing protein oligomerization. Proc Natl Acad Sci U S A (2010) 1.03
A critical and integrated view of the yeast interactome. Comp Funct Genomics (2004) 1.02
Transition to a beta-sheet-rich structure in spidroin in vitro: the effects of pH and cations. Biochemistry (2004) 1.02
The 'scavenger' m7GpppX pyrophosphatase activity of Dcs1 modulates nutrient-induced responses in yeast. Nucleic Acids Res (2004) 1.01
Imipenem resistance due to class A carbapenemase KPC-2 in a Flavobacterium odoratum isolate. J Med Microbiol (2011) 1.01
Proteomic analysis of extracellular matrix from the hepatic stellate cell line LX-2 identifies CYR61 and Wnt-5a as novel constituents of fibrotic liver. J Proteome Res (2012) 1.00
How to submit MS proteomics data to ProteomeXchange via the PRIDE database. Proteomics (2014) 0.99
Destabilization of DJ-1 by familial substitution and oxidative modifications: implications for Parkinson's disease. Biochemistry (2007) 0.99
Enacyloxins are products of an unusual hybrid modular polyketide synthase encoded by a cryptic Burkholderia ambifaria Genomic Island. Chem Biol (2011) 0.98
Naltrexone and disulfiram in patients with alcohol dependence and comorbid post-traumatic stress disorder. Biol Psychiatry (2006) 0.98
Proteomic analysis of α4β1 integrin adhesion complexes reveals α-subunit-dependent protein recruitment. Proteomics (2012) 0.98
Cloud CPFP: a shotgun proteomics data analysis pipeline using cloud and high performance computing. J Proteome Res (2012) 0.97
Development of an up-converting phosphor technology-based 10-channel lateral flow assay for profiling antibodies against Yersinia pestis. J Microbiol Methods (2010) 0.97
Tools (Viewer, Library and Validator) that facilitate use of the peptide and protein identification standard format, termed mzIdentML. Mol Cell Proteomics (2013) 0.97
Some observations on the structure and function of the spinning apparatus in the silkworm Bombyx mori. Biomacromolecules (2007) 0.97
A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes. FEBS Lett (2013) 0.97
Prognostic value of predischarge electrocardiographic measurement of infarct size after thrombolysis: insights from GUSTO I Economics and Quality of Life substudy. Am Heart J (2004) 0.96
A proposed metabolic strategy for monitoring disease progression in Alzheimer's disease. Electrophoresis (2009) 0.96
e-Fungi: a data resource for comparative analysis of fungal genomes. BMC Genomics (2007) 0.96
Capture and analysis of quantitative proteomic data. Proteomics (2007) 0.96
Pedro: a configurable data entry tool for XML. Bioinformatics (2004) 0.96
Proteins That Underlie Neoplastic Progression of Ulcerative Colitis. Proteomics Clin Appl (2009) 0.96
Comparative proteomic analysis of supportive and unsupportive extracellular matrix substrates for human embryonic stem cell maintenance. J Biol Chem (2013) 0.95
Neuroligin 2 is required for synapse development and function at the Drosophila neuromuscular junction. J Neurosci (2011) 0.95
Semi-automatic tool to describe, store and compare proteomics experiments based on MIAPE compliant reports. Proteomics (2010) 0.95