Published in Nat Biotechnol on August 01, 2008
The mzIdentML data standard for mass spectrometry-based proteomics results. Mol Cell Proteomics (2012) 2.82
The gel electrophoresis markup language (GelML) from the Proteomics Standards Initiative. Proteomics (2010) 0.91
Guidelines for reporting the use of gel image informatics in proteomics. Nat Biotechnol (2010) 0.86
Guidelines for reporting the use of column chromatography in proteomics. Nat Biotechnol (2010) 0.86
The impact of surfactant protein-A on ozone-induced changes in the mouse bronchoalveolar lavage proteome. Proteome Sci (2009) 0.85
Guidelines for reporting the use of capillary electrophoresis in proteomics. Nat Biotechnol (2010) 0.84
The mzqLibrary--An open source Java library supporting the HUPO-PSI quantitative proteomics standard. Proteomics (2015) 0.84
A tutorial for software development in quantitative proteomics using PSI standard formats. Biochim Biophys Acta (2013) 0.83
The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards. Mol Cell Proteomics (2011) 0.83
Down-regulation of 14-3-3 isoforms and annexin A5 proteins in lung adenocarcinoma induced by the tobacco-specific nitrosamine NNK in the A/J mouse revealed by proteomic analysis. J Proteome Res (2009) 0.81
Brain region specific mitophagy capacity could contribute to selective neuronal vulnerability in Parkinson's disease. Proteome Sci (2011) 0.80
Beyond fishing: the role of discovery proteomics in mechanistic lung research. Am J Physiol Lung Cell Mol Physiol (2008) 0.76
The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol (2007) 10.24
The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol (2008) 31.04
ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res (2003) 17.39
Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinformatics (2004) 13.46
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol (2008) 12.96
A common open representation of mass spectrometry data and its application to proteomics research. Nat Biotechnol (2004) 11.42
The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol (2007) 10.24
Intra- and interspecific variation in primate gene expression patterns. Science (2002) 7.92
Nucleolar proteome dynamics. Nature (2005) 7.32
The multifunctional nucleolus. Nat Rev Mol Cell Biol (2007) 7.08
Directed proteomic analysis of the human nucleolus. Curr Biol (2002) 7.04
Large-scale proteomic analysis of the human spliceosome. Genome Res (2002) 5.75
Mitochondrial dysfunction and oxidative damage in parkin-deficient mice. J Biol Chem (2004) 4.86
mzML--a community standard for mass spectrometry data. Mol Cell Proteomics (2010) 4.81
Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations. Nucleic Acids Res (2010) 4.62
Megascience. 'Omics data sharing. Science (2009) 4.36
PRIDE: a public repository of protein and peptide identifications for the proteomics community. Nucleic Acids Res (2006) 4.19
Paraspeckles: a novel nuclear domain. Curr Biol (2002) 4.19
Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France. Proteomics (2007) 3.69
The nucleolus under stress. Mol Cell (2010) 3.63
Guidelines for the next 10 years of proteomics. Proteomics (2006) 3.61
A systematic approach to modeling, capturing, and disseminating proteomics experimental data. Nat Biotechnol (2003) 3.57
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. Nat Biotechnol (2007) 3.55
Analysis of nucleolar protein dynamics reveals the nuclear degradation of ribosomal proteins. Curr Biol (2007) 3.55
A strategy capitalizing on synergies: the Reporting Structure for Biological Investigation (RSBI) working group. OMICS (2006) 3.51
The PSI-MOD community standard for representation of protein modification data. Nat Biotechnol (2008) 3.38
Circadian orchestration of the hepatic proteome. Curr Biol (2006) 3.37
A proposed framework for the description of plant metabolomics experiments and their results. Nat Biotechnol (2004) 3.32
Cajal body dynamics and association with chromatin are ATP-dependent. Nat Cell Biol (2002) 3.28
Feedback between p21 and reactive oxygen production is necessary for cell senescence. Mol Syst Biol (2010) 3.27
Addressing accuracy and precision issues in iTRAQ quantitation. Mol Cell Proteomics (2010) 3.10
Cardioprotection by S-nitrosation of a cysteine switch on mitochondrial complex I. Nat Med (2013) 3.10
Nuclear speckles. Cold Spring Harb Perspect Biol (2011) 3.04
Mapping the Arabidopsis organelle proteome. Proc Natl Acad Sci U S A (2006) 3.03
NADPH oxidase activity is essential for Keap1/Nrf2-mediated induction of GCLC in response to 2-indol-3-yl-methylenequinuclidin-3-ols. Cancer Res (2003) 3.02
Cajal bodies: a long history of discovery. Annu Rev Cell Dev Biol (2005) 2.92
Live-cell imaging RNAi screen identifies PP2A-B55alpha and importin-beta1 as key mitotic exit regulators in human cells. Nat Cell Biol (2010) 2.91
The mzIdentML data standard for mass spectrometry-based proteomics results. Mol Cell Proteomics (2012) 2.82
The phage abortive infection system, ToxIN, functions as a protein-RNA toxin-antitoxin pair. Proc Natl Acad Sci U S A (2009) 2.69
Distinct and overlapping sets of SUMO-1 and SUMO-2 target proteins revealed by quantitative proteomics. Mol Cell Proteomics (2006) 2.64
Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers. Anal Biochem (2006) 2.55
Analysis of detergent-resistant membranes in Arabidopsis. Evidence for plasma membrane lipid rafts. Plant Physiol (2004) 2.55
P54nrb forms a heterodimer with PSP1 that localizes to paraspeckles in an RNA-dependent manner. Mol Biol Cell (2005) 2.53
Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Plant Physiol (2003) 2.44
The tip-link antigen, a protein associated with the transduction complex of sensory hair cells, is protocadherin-15. J Neurosci (2006) 2.41
An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers. Mol Cell Proteomics (2009) 2.40
Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach. Mol Cell Proteomics (2014) 2.37
Repo-Man recruits PP1 gamma to chromatin and is essential for cell viability. J Cell Biol (2006) 2.33
i-Tracker: for quantitative proteomics using iTRAQ. BMC Genomics (2005) 2.22
A quantitative spatial proteomics analysis of proteome turnover in human cells. Mol Cell Proteomics (2011) 2.22
Condensin and Repo-Man-PP1 co-operate in the regulation of chromosome architecture during mitosis. Nat Cell Biol (2006) 2.16
Human miRNA precursors with box H/ACA snoRNA features. PLoS Comput Biol (2009) 2.06
Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Mol Biol Cell (2004) 2.02
Head-to-head comparison of serum fractionation techniques. J Proteome Res (2007) 1.98
Quantitative kinetic analysis of nucleolar breakdown and reassembly during mitosis in live human cells. J Cell Biol (2004) 1.98
Inhibition of histone deacetylase expands the renal progenitor cell population. J Am Soc Nephrol (2010) 1.94
Splicing regulation at the second catalytic step by Sex-lethal involves 3' splice site recognition by SPF45. Cell (2002) 1.94
Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. Proc Natl Acad Sci U S A (2005) 1.93
NOPdb: Nucleolar Proteome Database--2008 update. Nucleic Acids Res (2008) 1.93
A proteomic study of SUMO-2 target proteins. J Biol Chem (2004) 1.92
Guidelines for reporting the use of mass spectrometry in proteomics. Nat Biotechnol (2008) 1.90
Survey-based naming conventions for use in OBO Foundry ontology development. BMC Bioinformatics (2009) 1.90
Zebrafish chemical screening reveals an inhibitor of Dusp6 that expands cardiac cell lineages. Nat Chem Biol (2009) 1.88
Regulation of the autophagy protein LC3 by phosphorylation. J Cell Biol (2010) 1.86
Cyclostreptin binds covalently to microtubule pores and lumenal taxoid binding sites. Nat Chem Biol (2007) 1.83
Comparative proteomics of clathrin-coated vesicles. J Cell Biol (2006) 1.83
Determining a significant change in protein expression with DeCyder during a pair-wise comparison using two-dimensional difference gel electrophoresis. Proteomics (2004) 1.82
Hedgehog signaling regulates nociceptive sensitization. Curr Biol (2011) 1.81
A common pharmacophore for a diverse set of colchicine site inhibitors using a structure-based approach. J Med Chem (2005) 1.80
Time-lapse imaging reveals dynamic relocalization of PP1gamma throughout the mammalian cell cycle. Mol Biol Cell (2003) 1.78
A quantitative proteomics analysis of subcellular proteome localization and changes induced by DNA damage. Mol Cell Proteomics (2009) 1.74
Cajal bodies and coilin--moving towards function. J Cell Biol (2002) 1.69
NOPdb: Nucleolar Proteome Database. Nucleic Acids Res (2006) 1.68
Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis. PLoS One (2008) 1.68
Protein quantitation through targeted mass spectrometry: the way out of biomarker purgatory? Clin Chem (2008) 1.66
TraML--a standard format for exchange of selected reaction monitoring transition lists. Mol Cell Proteomics (2011) 1.65
Molecular analysis of core kinetochore composition and assembly in Drosophila melanogaster. PLoS One (2007) 1.64
Yeast Asc1p and mammalian RACK1 are functionally orthologous core 40S ribosomal proteins that repress gene expression. Mol Cell Biol (2004) 1.64
SETH1 and SETH2, two components of the glycosylphosphatidylinositol anchor biosynthetic pathway, are required for pollen germination and tube growth in Arabidopsis. Plant Cell (2003) 1.63
The PSI semantic validator: a framework to check MIAPE compliance of proteomics data. Proteomics (2009) 1.62
Triggering the succinate receptor GPR91 on dendritic cells enhances immunity. Nat Immunol (2008) 1.61
Guidelines for reporting the use of mass spectrometry informatics in proteomics. Nat Biotechnol (2008) 1.60
FMRP interferes with the Rac1 pathway and controls actin cytoskeleton dynamics in murine fibroblasts. Hum Mol Genet (2005) 1.60
Staphylococcus aureus fur regulates the expression of virulence factors that contribute to the pathogenesis of pneumonia. Infect Immun (2010) 1.59
Immunoaffinity separation of plasma proteins by IgY microbeads: meeting the needs of proteomic sample preparation and analysis. Proteomics (2005) 1.58
Two distinct arginine methyltransferases are required for biogenesis of Sm-class ribonucleoproteins. J Cell Biol (2007) 1.58
Silver staining of proteins in polyacrylamide gels. Nat Protoc (2006) 1.58
High-resolution whole-genome sequencing reveals that specific chromatin domains from most human chromosomes associate with nucleoli. Mol Biol Cell (2010) 1.56
Mitotic phosphatases: no longer silent partners. Curr Opin Cell Biol (2006) 1.55