Published in Cytogenet Genome Res on July 13, 2010
The genome of the mesopolyploid crop species Brassica rapa. Nat Genet (2011) 8.23
RNAi-mediated pathways in the nucleus. Nat Rev Genet (2005) 6.55
Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery. Science (2004) 6.35
RNAi related mechanisms affect both transcriptional and posttranscriptional transgene silencing in Drosophila. Mol Cell (2002) 4.90
Understanding mechanisms of novel gene expression in polyploids. Trends Genet (2003) 4.90
Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype. Plant Cell (2007) 3.21
Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize. Proc Natl Acad Sci U S A (2004) 2.71
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). OMICS (2006) 2.57
Centromeric retroelements and satellites interact with maize kinetochore protein CENH3. Plant Cell (2002) 2.55
Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels. BMC Evol Biol (2010) 2.50
Cellular reactions to gene dosage imbalance: genomic, transcriptomic and proteomic effects. Trends Genet (2008) 2.44
Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes. Chromosome Res (2009) 2.33
A molecular view of plant centromeres. Trends Plant Sci (2003) 2.26
Nonadditive gene expression in diploid and triploid hybrids of maize. Genetics (2004) 2.14
Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence. Plant Cell (2009) 2.01
High frequency of centromere inactivation resulting in stable dicentric chromosomes of maize. Proc Natl Acad Sci U S A (2006) 1.98
Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. PLoS One (2012) 1.82
A genome triplication associated with early diversification of the core eudicots. Genome Biol (2012) 1.80
Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics. Proc Natl Acad Sci U S A (2009) 1.79
Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus. Proc Natl Acad Sci U S A (2011) 1.72
Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals dynamic Loci shaped primarily by retrotransposons. PLoS Genet (2009) 1.71
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. Nat Genet (2013) 1.68
Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids. Plant Physiol (2005) 1.68
Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proc Natl Acad Sci U S A (2013) 1.63
Are all sex chromosomes created equal? Trends Genet (2011) 1.61
Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea. Genome Biol (2014) 1.56
Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. Genetics (2012) 1.49
Current perspectives and the future of domestication studies. Proc Natl Acad Sci U S A (2014) 1.45
Molecular and functional dissection of the maize B chromosome centromere. Plant Cell (2005) 1.43
Repeated evolution of net venation and fleshy fruits among monocots in shaded habitats confirms a priori predictions: evidence from an ndhF phylogeny. Proc Biol Sci (2005) 1.40
Gene expression analysis of the function of the male-specific lethal complex in Drosophila. Genetics (2005) 1.39
Rapid chromosome evolution in recently formed polyploids in Tragopogon (Asteraceae). PLoS One (2008) 1.37
Reactivation of an inactive centromere reveals epigenetic and structural components for centromere specification in maize. Plant Cell (2009) 1.35
Family-level relationships of Onagraceae based on chloroplast rbcL and ndhF data. Am J Bot (2003) 1.33
Effects of reunited diverged regulatory hierarchies in allopolyploids and species hybrids. Trends Genet (2003) 1.32
Sensitivity of 70-mer oligonucleotides and cDNAs for microarray analysis of gene expression in Arabidopsis and its related species. Plant Biotechnol J (2004) 1.32
Construction and behavior of engineered minichromosomes in maize. Proc Natl Acad Sci U S A (2007) 1.25
Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints. Plant Cell (2011) 1.22
Telomere-mediated chromosomal truncation in maize. Proc Natl Acad Sci U S A (2006) 1.19
Genetic and physical maps around the sex-determining M-locus of the dioecious plant asparagus. Mol Genet Genomics (2007) 1.19
Sequences associated with A chromosome centromeres are present throughout the maize B chromosome. Chromosoma (2004) 1.17
Gene expression analysis at the intersection of ploidy and hybridity in maize. Theor Appl Genet (2010) 1.15
Single-gene detection and karyotyping using small-target fluorescence in situ hybridization on maize somatic chromosomes. Genetics (2007) 1.13
Genomic dosage effects on heterosis in triploid maize. Proc Natl Acad Sci U S A (2013) 1.13
Dominance and gene dosage balance in health and disease: why levels matter! J Pathol (2010) 1.11
RNA silencing in Drosophila. FEBS Lett (2005) 1.10
Histone modifications associated with both A and B chromosomes of maize. Chromosome Res (2008) 1.10
A fluorescence in situ hybridization system for karyotyping soybean. Genetics (2010) 1.09
Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae. Am J Bot (2012) 1.09
Interaction of RNA polymerase II and the small RNA machinery affects heterochromatic silencing in Drosophila. Epigenetics Chromatin (2009) 1.08
Distinct chromosomal distributions of highly repetitive sequences in maize. Chromosome Res (2007) 1.08
Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae). Am J Bot (2012) 1.08
Karyotype and identification of all homoeologous chromosomes of allopolyploid Brassica napus and its diploid progenitors. Genetics (2010) 1.06
De novo centromere formation on a chromosome fragment in maize. Proc Natl Acad Sci U S A (2013) 1.05
Gene dosage effects: nonlinearities, genetic interactions, and dosage compensation. Trends Genet (2013) 1.04
Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis. New Phytol (2012) 1.03
Complexity of genome evolution by segmental rearrangement in Brassica rapa revealed by sequence-level analysis. BMC Genomics (2009) 1.02
Retroelement genome painting: cytological visualization of retroelement expansions in the genera Zea and Tripsacum. Genetics (2006) 1.02
Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids. Proc Natl Acad Sci U S A (2014) 1.01
Misregulation of sex-lethal and disruption of male-specific lethal complex localization in Drosophila species hybrids. Genetics (2006) 1.01
Male-specific lethal complex in Drosophila counteracts histone acetylation and does not mediate dosage compensation. Proc Natl Acad Sci U S A (2013) 1.00
The dominant inhibitory chalcone synthase allele C2-Idf (inhibitor diffuse) from Zea mays (L.) acts via an endogenous RNA silencing mechanism. Genetics (2005) 0.99
Urticalean rosids: circumscription, rosid ancestry, and phylogenetics based on rbcL, trnL-F, and ndhF sequences. Am J Bot (2002) 0.99
Preparation of samples for comparative studies of plant chromosomes using in situ hybridization methods. Methods Enzymol (2005) 0.99
Mitochondrial DNA transfer to the nucleus generates extensive insertion site variation in maize. Genetics (2008) 0.98
Genetic variation for the response to ploidy change in Zea mays L. Theor Appl Genet (2006) 0.98
Long identical multispecies elements in plant and animal genomes. Proc Natl Acad Sci U S A (2012) 0.97
Induction of tetraploid derivatives of maize inbred lines by nitrous oxide gas treatment. J Hered (2006) 0.97
Phylogeny of the Asparagales based on three plastid and two mitochondrial genes. Am J Bot (2012) 0.96
Storytelling and story testing in domestication. Proc Natl Acad Sci U S A (2014) 0.96
Biodiversity assessment: state-of-the-art techniques in phylogenomics and species identification. Am J Bot (2011) 0.95
Centromere function and nondisjunction are independent components of the maize B chromosome accumulation mechanism. Plant Cell (2007) 0.94
A hemicentric inversion in the maize line knobless Tama flint created two sites of centromeric elements and moved the kinetochore-forming region. Chromosoma (2007) 0.94
Distinct DNA methylation patterns associated with active and inactive centromeres of the maize B chromosome. Genome Res (2011) 0.94
Escape from preferential retention following repeated whole genome duplications in plants. Front Plant Sci (2012) 0.94
Analysis of B-genome chromosome introgression in interspecific hybrids of Brassica napus × B. carinata. Genetics (2010) 0.93
A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Genome Biol (2011) 0.93
Advances in plant chromosome identification and cytogenetic techniques. Curr Opin Plant Biol (2005) 0.93
Localization and transcription of a retrotransposon-derived element on the maize B chromosome. Chromosome Res (2007) 0.92
A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations. BMC Genomics (2011) 0.92
Allopolyploidization lays the foundation for evolution of distinct populations: evidence from analysis of synthetic Arabidopsis allohexaploids. Genetics (2012) 0.91
Phenotypic and gene expression analyses of a ploidy series of maize inbred Oh43. Plant Mol Biol (2010) 0.91
Comparative analysis of inbred and hybrid maize at the diploid and tetraploid levels. Theor Appl Genet (2007) 0.91
Minichromosome analysis of chromosome pairing, disjunction, and sister chromatid cohesion in maize. Plant Cell (2007) 0.91
Diversification times among Brassica (Brassicaceae) crops suggest hybrid formation after 20 million years of divergence. Am J Bot (2014) 0.90
Inactivation of a centromere during the formation of a translocation in maize. Chromosome Res (2011) 0.90
Plant chromosomes from end to end: telomeres, heterochromatin and centromeres. Curr Opin Plant Biol (2007) 0.90
Intragenomic conflict between the two major knob repeats of maize. Genetics (2013) 0.90
Cytological visualization of DNA transposons and their transposition pattern in somatic cells of maize. Genetics (2006) 0.89
What's in a centromere? Genome Biol (2004) 0.89
Dosage compensation and inverse effects in triple X metafemales of Drosophila. Proc Natl Acad Sci U S A (2013) 0.88
In vivo modification of a maize engineered minichromosome. Chromosoma (2013) 0.87
Differential effect of aneuploidy on the X chromosome and genes with sex-biased expression in Drosophila. Proc Natl Acad Sci U S A (2013) 0.87
Nonadditive gene expression in polyploids. Annu Rev Genet (2014) 0.87
The role of DNA sequence in centromere formation. Genome Biol (2003) 0.86
Drosophila KDM2 is a H3K4me3 demethylase regulating nucleolar organization. BMC Res Notes (2009) 0.86
Cytological and molecular analysis of centromere misdivision in maize. Genome (2002) 0.86
Global analysis of siRNA-mediated transcriptional gene silencing. Bioessays (2005) 0.86