Published in Proc Natl Acad Sci U S A on August 06, 2010
Origin of first cells at terrestrial, anoxic geothermal fields. Proc Natl Acad Sci U S A (2012) 1.26
Metallothionein protein evolution: a miniassay. J Biol Inorg Chem (2011) 1.14
History of biological metal utilization inferred through phylogenomic analysis of protein structures. Proc Natl Acad Sci U S A (2010) 1.71
On the origin of life in the zinc world. 2. Validation of the hypothesis on the photosynthesizing zinc sulfide edifices as cradles of life on Earth. Biol Direct (2009) 1.19
On the origin of life in the zinc world: 1. Photosynthesizing, porous edifices built of hydrothermally precipitated zinc sulfide as cradles of life on Earth. Biol Direct (2009) 1.08
C-di-GMP: the dawning of a novel bacterial signalling system. Mol Microbiol (2005) 5.41
Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes. BMC Evol Biol (2003) 4.70
Cyclic di-GMP: the first 25 years of a universal bacterial second messenger. Microbiol Mol Biol Rev (2013) 4.69
PilZ domain is part of the bacterial c-di-GMP binding protein. Bioinformatics (2005) 3.59
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad Sci U S A (2003) 3.55
An extracellular calcium-binding domain in bacteria with a distant relationship to EF-hands. FEMS Microbiol Lett (2003) 3.45
A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia. Environ Microbiol (2013) 2.63
The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources. Nucleic Acids Res (2009) 2.42
Dimeric dUTPases, HisE, and MazG belong to a new superfamily of all-alpha NTP pyrophosphohydrolases with potential "house-cleaning" functions. J Mol Biol (2005) 2.14
The cyanobacterial genome core and the origin of photosynthesis. Proc Natl Acad Sci U S A (2006) 2.11
A novel type of conserved DNA-binding domain in the transcriptional regulators of the AlgR/AgrA/LytR family. Nucleic Acids Res (2002) 2.10
Amidase domains from bacterial and phage autolysins define a family of gamma-D,L-glutamate-specific amidohydrolases. Trends Biochem Sci (2003) 2.06
Common extracellular sensory domains in transmembrane receptors for diverse signal transduction pathways in bacteria and archaea. J Bacteriol (2003) 1.97
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res (2010) 1.97
Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. Proc Natl Acad Sci U S A (2005) 1.93
Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia. Biol Direct (2008) 1.78
Planctomycetes and eukaryotes: a case of analogy not homology. Bioessays (2011) 1.76
Phylogenomic analysis of the Giardia intestinalis transcarboxylase reveals multiple instances of domain fusion and fission in the evolution of biotin-dependent enzymes. J Mol Microbiol Biotechnol (2003) 1.76
The 2013 Nucleic Acids Research Database Issue and the online molecular biology database collection. Nucleic Acids Res (2012) 1.66
Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy. Proc Natl Acad Sci U S A (2004) 1.62
Inventing the dynamo machine: the evolution of the F-type and V-type ATPases. Nat Rev Microbiol (2007) 1.52
The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation. ISME J (2009) 1.40
Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1. Genome Biol (2008) 1.39
Non-homologous isofunctional enzymes: a systematic analysis of alternative solutions in enzyme evolution. Biol Direct (2010) 1.35
The PA14 domain, a conserved all-beta domain in bacterial toxins, enzymes, adhesins and signaling molecules. Trends Biochem Sci (2004) 1.32
Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae. Nucleic Acids Res (2004) 1.31
The proton-driven rotor of ATP synthase: ohmic conductance (10 fS), and absence of voltage gating. Biophys J (2004) 1.31
The 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection. Nucleic Acids Res (2013) 1.26
Origin of first cells at terrestrial, anoxic geothermal fields. Proc Natl Acad Sci U S A (2012) 1.26
Towards BioDBcore: a community-defined information specification for biological databases. Database (Oxford) (2011) 1.24
The COMBREX project: design, methodology, and initial results. PLoS Biol (2013) 1.24
The DxDxDG motif for calcium binding: multiple structural contexts and implications for evolution. J Mol Biol (2004) 1.24
Evolutionary primacy of sodium bioenergetics. Biol Direct (2008) 1.23
On the origin of life in the zinc world. 2. Validation of the hypothesis on the photosynthesizing zinc sulfide edifices as cradles of life on Earth. Biol Direct (2009) 1.19
The past and present of sodium energetics: may the sodium-motive force be with you. Biochim Biophys Acta (2008) 1.17
Single domain response regulators: molecular switches with emerging roles in cell organization and dynamics. Curr Opin Microbiol (2009) 1.17
Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20. J Bacteriol (2003) 1.13
Structural insight into the mechanism of c-di-GMP hydrolysis by EAL domain phosphodiesterases. J Mol Biol (2010) 1.12
In Silico Metabolic Model and Protein Expression of Haemophilus influenzae Strain Rd KW20 in Rich Medium. OMICS (2004) 1.10
Low dielectric permittivity of water at the membrane interface: effect on the energy coupling mechanism in biological membranes. Biophys J (2003) 1.09
MASE1 and MASE2: two novel integral membrane sensory domains. J Mol Microbiol Biotechnol (2003) 1.09
Telling bacteria: do not LytTR. Structure (2008) 1.09
Globins synthesize the second messenger bis-(3'-5')-cyclic diguanosine monophosphate in bacteria. J Mol Biol (2009) 1.08
Co-evolution of primordial membranes and membrane proteins. Trends Biochem Sci (2009) 1.07
Sequence conservation in the chagasin family suggests a common trend in cysteine proteinase binding by unrelated protein inhibitors. Protein Sci (2002) 1.03
Proton transfer dynamics at the membrane/water interface: dependence on the fixed and mobile pH buffers, on the size and form of membrane particles, and on the interfacial potential barrier. Biophys J (2004) 1.01
Cyanobacterial response regulator PatA contains a conserved N-terminal domain (PATAN) with an alpha-helical insertion. Bioinformatics (2006) 1.00
Experimental verification of a sequence-based prediction: F(1)F(0)-type ATPase of Vibrio cholerae transports protons, not Na(+) ions. J Bacteriol (2003) 0.99
The crystal structure of a complex of Campylobacter jejuni dUTPase with substrate analogue sheds light on the mechanism and suggests the "basic module" for dimeric d(C/U)TPases. J Mol Biol (2004) 0.99
Diversity of Cyclic Di-GMP-Binding Proteins and Mechanisms. J Bacteriol (2016) 0.99
New structural and functional contexts of the Dx[DN]xDG linear motif: insights into evolution of calcium-binding proteins. PLoS One (2011) 0.98
GIL, a new c-di-GMP-binding protein domain involved in regulation of cellulose synthesis in enterobacteria. Mol Microbiol (2014) 0.95
Chromatophore vesicles of Rhodobacter capsulatus contain on average one F(O)F(1)-ATP synthase each. Biophys J (2002) 0.94
Sentra: a database of signal transduction proteins for comparative genome analysis. Nucleic Acids Res (2006) 0.93
Characterization of the N-ATPase, a distinct, laterally transferred Na+-translocating form of the bacterial F-type membrane ATPase. Bioinformatics (2010) 0.92
Sequence analysis and characterization of a novel fibronectin-binding repeat domain from the surface of Streptococcus pneumoniae. OMICS (2004) 0.91
Crystal structure of the bacterial YhcH protein indicates a role in sialic acid catabolism. J Bacteriol (2005) 0.90
Functional analysis of conserved polar residues in Vc-NhaD, Na+/H+ antiporter of Vibrio cholerae. J Biol Chem (2005) 0.89
Structural diversity of calcium-binding proteins in bacteria: single-handed EF-hands? Trends Microbiol (2003) 0.88
Genome Diversity of Spore-Forming Firmicutes. Microbiol Spectr (2013) 0.87
Sequence analysis of GerM and SpoVS, uncharacterized bacterial 'sporulation' proteins with widespread phylogenetic distribution. Bioinformatics (2008) 0.86
Analysis of structure and function of putative surface-exposed proteins encoded in the Streptococcus pneumoniae genome: a bioinformatics-based approach to vaccine and drug design. Crit Rev Biochem Mol Biol (2003) 0.86
Physico-chemical and evolutionary constraints for the formation and selection of first biopolymers: towards the consensus paradigm of the abiogenic origin of life. Chem Biodivers (2007) 0.86
Survival of the fittest before the beginning of life: selection of the first oligonucleotide-like polymers by UV light. BMC Evol Biol (2003) 0.85
Evolution of cytochrome bc complexes: from membrane-anchored dehydrogenases of ancient bacteria to triggers of apoptosis in vertebrates. Biochim Biophys Acta (2013) 0.84
Bacterial second messengers, cGMP and c-di-GMP, in a quest for regulatory dominance. EMBO J (2013) 0.84
Phylogenomic reconstruction of archaeal fatty acid metabolism. Environ Microbiol (2014) 0.84
Flash-induced turnover of the cytochrome bc1 complex in chromatophores of Rhodobacter capsulatus: binding of Zn2+ decelerates likewise the oxidation of cytochrome b, the reduction of cytochrome c1 and the voltage generation. Biochim Biophys Acta (2002) 0.84
Salt in the wound: a possible role of Na+ gradient in chlamydial infection. J Mol Microbiol Biotechnol (2004) 0.82
Met23Lys mutation in subunit gamma of F(O)F(1)-ATP synthase from Rhodobacter capsulatus impairs the activation of ATP hydrolysis by protonmotive force. Biochim Biophys Acta (2007) 0.80
How many signal peptides are there in bacteria? Environ Microbiol (2013) 0.80
Evolution of cell division: from shear mechanics to complex molecular machineries. Cell (2013) 0.80
Proton slip in the ATP synthase of Rhodobacter capsulatus: induction, proton conduction, and nucleotide dependence. Biochim Biophys Acta (2005) 0.80
The role of energy in the emergence of biology from chemistry. Orig Life Evol Biosph (2012) 0.80
Open questions on the origin of life at anoxic geothermal fields. Orig Life Evol Biosph (2012) 0.80
Dynamics of bioenergetic microcompartments. Biol Chem (2013) 0.79
Genome-based identification and characterization of a putative mucin-binding protein from the surface of Streptococcus pneumoniae. Proteins (2007) 0.79
Proton transfer in the photosynthetic reaction center of Blastochloris viridis. FEBS Lett (2007) 0.75
From biofouling to bioremediation: the good, the bad and the vague. Curr Opin Biotechnol (2004) 0.75
Microbial genome analysis: the COG approach. Brief Bioinform (2017) 0.75