Published in ISME J on August 26, 2010
Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype. Proc Natl Acad Sci U S A (2011) 2.47
Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms. PLoS One (2011) 1.88
Conservation and diversity of seed associated endophytes in Zea across boundaries of evolution, ethnography and ecology. PLoS One (2011) 1.60
Metagenomics of the Svalbard reindeer rumen microbiome reveals abundance of polysaccharide utilization loci. PLoS One (2012) 1.51
Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives. Proc Natl Acad Sci U S A (2013) 1.47
The composition of the gut microbiota throughout life, with an emphasis on early life. Microb Ecol Health Dis (2015) 1.33
Sewage reflects the distribution of human faecal Lachnospiraceae. Environ Microbiol (2013) 1.17
Abrupt temporal fluctuations in the chicken fecal microbiota are explained by its gastrointestinal origin. Appl Environ Microbiol (2012) 1.14
Deviations in human gut microbiota: a novel diagnostic test for determining dysbiosis in patients with IBS or IBD. Aliment Pharmacol Ther (2015) 1.01
Protective effect of probiotics on Salmonella infectivity assessed with combined in vitro gut fermentation-cellular models. BMC Microbiol (2011) 0.98
Discovering new indicators of fecal pollution. Trends Microbiol (2014) 0.96
Characterisation of the faecal bacterial community in adult and elderly horses fed a high fibre, high oil or high starch diet using 454 pyrosequencing. PLoS One (2014) 0.96
Identification of a core bacterial community within the large intestine of the horse. PLoS One (2013) 0.94
Review article: dietary fibre-microbiota interactions. Aliment Pharmacol Ther (2015) 0.92
Differences in mucosal gene expression in the colon of two inbred mouse strains after colonization with commensal gut bacteria. PLoS One (2013) 0.86
Bringing the gut microbiota into focus through microbial culture: recent progress and future perspective. Curr Opin Microbiol (2013) 0.82
Effect of Dietary Oxalate on the Gut Microbiota of the Mammalian Herbivore Neotoma albigula. Appl Environ Microbiol (2016) 0.81
Microbiota of the major South Atlantic reef building coral Mussismilia. Microb Ecol (2014) 0.81
Assessment of the geographic origins of pinewood nematode isolates via single nucleotide polymorphism in effector genes. PLoS One (2013) 0.80
High-Resolution Analyses of Overlap in the Microbiota Between Mothers and Their Children. Curr Microbiol (2015) 0.79
Rearing Room Affects the Non-dominant Chicken Cecum Microbiota, While Diet Affects the Dominant Microbiota. Front Vet Sci (2016) 0.78
De novo semi-alignment of 16S rRNA gene sequences for deep phylogenetic characterization of next generation sequencing data. Microbes Environ (2013) 0.77
The intestinal microbiome, barrier function, and immune system in inflammatory bowel disease: a tripartite pathophysiological circuit with implications for new therapeutic directions. Therap Adv Gastroenterol (2016) 0.75
Potential association of vacuum cleaning frequency with an altered gut microbiota in pregnant women and their 2-year-old children. Microbiome (2015) 0.75
Diet-Dependent Modular Dynamic Interactions of the Equine Cecal Microbiota. Microbes Environ (2016) 0.75
Isolation of Genetically Tractable Most-Wanted Bacteria by Metaparental Mating. Sci Rep (2015) 0.75
The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol (1987) 266.90
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol (2007) 168.76
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol (2009) 77.55
BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol (2007) 74.13
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res (2008) 52.43
A core gut microbiome in obese and lean twins. Nature (2008) 52.30
UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol (2005) 49.76
Diversity of the human intestinal microbial flora. Science (2005) 49.64
An obesity-associated gut microbiome with increased capacity for energy harvest. Nature (2006) 44.35
Microbial ecology: human gut microbes associated with obesity. Nature (2006) 36.98
The human microbiome project. Nature (2007) 28.53
UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics (2006) 25.13
Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature (2004) 24.40
Evolution of mammals and their gut microbes. Science (2008) 21.40
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci U S A (2007) 20.60
Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci U S A (2004) 20.53
Development of the human infant intestinal microbiota. PLoS Biol (2007) 18.91
Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput Appl Biosci (1997) 17.32
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol (2008) 16.57
Dendroscope: An interactive viewer for large phylogenetic trees. BMC Bioinformatics (2007) 11.03
Evolution in bacteria: evidence for a universal substitution rate in cellular genomes. J Mol Evol (1987) 9.84
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proc Natl Acad Sci U S A (2010) 7.09
Symbiotic gut microbes modulate human metabolic phenotypes. Proc Natl Acad Sci U S A (2008) 6.42
Towards the human intestinal microbiota phylogenetic core. Environ Microbiol (2009) 5.72
Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. PLoS One (2009) 4.93
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. Proc Natl Acad Sci U S A (2009) 4.09
Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees. Science (2009) 3.82
Symbiosis. Curr Biol (2006) 3.72
Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults. Environ Microbiol (2009) 3.57
Atopy in children of families with an anthroposophic lifestyle. Lancet (1999) 3.41
Investigations into the influence of host genetics on the predominant eubacteria in the faecal microflora of children. J Med Microbiol (2005) 3.36
Molecular phylogeny and divergence times of deuterostome animals. Mol Biol Evol (2005) 2.57
Predominant role of host genetics in controlling the composition of gut microbiota. PLoS One (2008) 2.33
The evolution of adaptive immunity. Annu Rev Immunol (2006) 2.32
The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil records. Philos Trans R Soc Lond B Biol Sci (2008) 2.25
Restricted distribution of the butyrate kinase pathway among butyrate-producing bacteria from the human colon. J Bacteriol (2004) 2.09
On the origin of prokaryotic species. Genome Res (2009) 1.92
Effects of butyrate on intestinal barrier function in a Caco-2 cell monolayer model of intestinal barrier. Pediatr Res (2007) 1.48
Culture-independent analysis of the gut microbiota in colorectal cancer and polyposis. Environ Microbiol (2008) 1.42
The effects of short-chain fatty acids on colon epithelial proliferation and survival depend on the cellular phenotype. J Cancer Res Clin Oncol (2006) 1.36
The starved colon--diminished mucosal nutrition, diminished absorption, and colitis. Dis Colon Rectum (1990) 1.23
Reclassification of Eubacterium formicigenerans Holdeman and Moore 1974 as Dorea formicigenerans gen. nov., comb. nov., and description of Dorea longicatena sp. nov., isolated from human faeces. Int J Syst Evol Microbiol (2002) 1.22
Quantitative and temporal proteome analysis of butyrate-treated colorectal cancer cells. Mol Cell Proteomics (2008) 1.14
Intestinal microbiota: a potential diet-responsive prevention target in ApcMin mice. Mol Carcinog (2007) 1.07
Sodium butyrate inhibits carcinoma development in a 1,2-dimethylhydrazine-induced rat colon cancer. JPEN J Parenter Enteral Nutr (1998) 1.04
Alignment-independent bilinear multivariate modelling (AIBIMM) for global analyses of 16S rRNA gene phylogeny. Int J Syst Evol Microbiol (2006) 1.00
Alignment-independent comparisons of human gastrointestinal tract microbial communities in a multidimensional 16S rRNA gene evolutionary space. Appl Environ Microbiol (2007) 1.00
Butyrate-induced differentiation of colon cancer cells is PKC and JNK dependent. Dig Dis Sci (2005) 0.98
Influence of dietary fiber on transit time, fecal composition, and myoelectrical activity of the primate right colon. Dig Dis Sci (1980) 0.91
Changes in production of ethanol, acids and H2 from glucose by the fecal flora of a 16- to 158-d-old breast-fed infant. J Nutr (1998) 0.81
Natural variation in the microcystin synthetase operon mcyABC and impact on microcystin production in Microcystis strains. J Bacteriol (2003) 1.81
Ethidium monoazide for DNA-based differentiation of viable and dead bacteria by 5'-nuclease PCR. Biotechniques (2003) 1.78
Does Maternal Perinatal Probiotic Supplementation Alter the Intestinal Microbiota of Mother and Child? J Pediatr Gastroenterol Nutr (2015) 1.46
Convergent temporal dynamics of the human infant gut microbiota. ISME J (2009) 1.31
Biofilm formation and the presence of the intercellular adhesion locus ica among staphylococci from food and food processing environments. Appl Environ Microbiol (2003) 1.29
Development of gut microbiota in infants not exposed to medical interventions. APMIS (2010) 1.23
Major faecal microbiota shifts in composition and diversity with age in a geographically restricted cohort of mothers and their children. FEMS Microbiol Ecol (2013) 1.22
Explorative multifactor approach for investigating global survival mechanisms of Campylobacter jejuni under environmental conditions. Appl Environ Microbiol (2005) 1.20
Gut microbiota diversity predicts immune status in HIV-1 infection. AIDS (2015) 1.05
Plasma lipopolysaccharide is closely associated with glycemic control and abdominal obesity: evidence from bariatric surgery. Diabetes Care (2013) 1.05
Comparison of chicken gut colonisation by the pathogens Campylobacter jejuni and Clostridium perfringens by real-time quantitative PCR. Mol Cell Probes (2006) 1.04
Novel developmental analyses identify longitudinal patterns of early gut microbiota that affect infant growth. PLoS Comput Biol (2013) 0.99
The dominant microbial community associated with fermentation of Obushera (sorghum and millet beverages) determined by culture-dependent and culture-independent methods. Int J Food Microbiol (2012) 0.99
Differentiation of important and closely related cereal plant species (Poaceae) in food by hybridization to an oligonucleotide array. J Agric Food Chem (2005) 0.99
Paratransgenesis: an approach to improve colony health and molecular insight in honey bees (Apis mellifera)? Integr Comp Biol (2012) 0.99
Gene expression profiles in testis of pigs with extreme high and low levels of androstenone. BMC Genomics (2007) 0.98
Adapted tolerance to benzalkonium chloride in Escherichia coli K-12 studied by transcriptome and proteome analyses. Microbiology (2007) 0.98
A microbial diagnostic microarray technique for the sensitive detection and identification of pathogenic bacteria in a background of nonpathogens. Anal Biochem (2006) 0.95
Multivariate analysis of complex DNA sequence electropherograms for high-throughput quantitative analysis of mixed microbial populations. Appl Environ Microbiol (2007) 0.95
Potential influence of the first PCR cycles in real-time comparative gene quantifications. Biotechniques (2004) 0.92
Differential gene expression of fatty acid binding proteins during porcine adipogenesis. Comp Biochem Physiol B Biochem Mol Biol (2008) 0.92
Web of ecological interactions in an experimental gut microbiota. Environ Microbiol (2010) 0.92
Gene expression profiles in liver of pigs with extreme high and low levels of androstenone. BMC Vet Res (2008) 0.91
Transcript profiling of candidate genes in testis of pigs exhibiting large differences in androstenone levels. BMC Genet (2010) 0.90
Temporal development of the infant gut microbiota in immunoglobulin E-sensitized and nonsensitized children determined by the GA-map infant array. Clin Vaccine Immunol (2011) 0.90
Diversity, transmission and persistence of Escherichia coli in a cohort of mothers and their infants. Environ Microbiol Rep (2011) 0.90
Food patterns and dietary quality associated with organic food consumption during pregnancy; data from a large cohort of pregnant women in Norway. BMC Public Health (2012) 0.89
Co-infection dynamics of a major food-borne zoonotic pathogen in chicken. PLoS Pathog (2007) 0.88
Shift from farm to dairy tank milk microbiota revealed by a polyphasic approach is independent from geographical origin. Int J Food Microbiol (2010) 0.87
Global responses of Escherichia coli to adverse conditions determined by microarrays and FT-IR spectroscopy. Can J Microbiol (2009) 0.87
Depot specific differences during adipogenesis of porcine stromal-vascular cells. Cell Biol Int (2008) 0.87
The gene encoding the cytosolic small subunit of ADP-glucose pyrophosphorylase in barley endosperm also encodes the major plastidial small subunit in the leaves. J Exp Bot (2006) 0.86
Quality changes of prerigor filleted Atlantic salmon (Salmo salar L.) packaged in modified atmosphere using CO2 emitter, traditional MAP, and vacuum. J Food Sci (2009) 0.85
Genomic organization and transcript profiling of the bovine toll-like receptor gene cluster TLR6-TLR1-TLR10. Gene (2006) 0.84
Context-dependent competition in a model gut bacterial community. PLoS One (2013) 0.84
Reduced Levels of D-dimer and Changes in Gut Microbiota Composition After Probiotic Intervention in HIV-Infected Individuals on Stable ART. J Acquir Immune Defic Syndr (2015) 0.84
Age-dependent fecal bacterial correlation to inflammatory bowel disease for newly diagnosed untreated children. Gastroenterol Res Pract (2013) 0.82
Subminimal inhibitory concentrations of the disinfectant benzalkonium chloride select for a tolerant subpopulation of Escherichia coli with inheritable characteristics. Int J Mol Sci (2012) 0.81
Detection and quantification of Shiga toxin-encoding genes in sheep faeces by real-time PCR. Mol Cell Probes (2005) 0.80
Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche. BMC Genomics (2013) 0.80
Discriminatory power, typability, and accuracy of single nucleotide extension microarrays. J AOAC Int (2007) 0.80
Changes in lipid metabolism associated gene transcripts during porcine adipogenesis. Comp Biochem Physiol B Biochem Mol Biol (2009) 0.79
High-Resolution Analyses of Overlap in the Microbiota Between Mothers and Their Children. Curr Microbiol (2015) 0.79
Characterizing mixed microbial population dynamics using time-series analysis. ISME J (2008) 0.79
Direct haplotype-specific DNA sequencing. Prep Biochem Biotechnol (2006) 0.79
Analysis of covariance patterns in gene expression data and FT-IR spectra. J Microbiol Methods (2005) 0.78
Probiotics, symptoms, and gut microbiota: what are the relations? A randomized controlled trial in subjects with irritable bowel syndrome. Gastroenterol Res Pract (2012) 0.78
Diversity of intestinal microbiota in infancy and the risk of allergic disease in childhood. Curr Opin Allergy Clin Immunol (2013) 0.78
Shifts in the Midgut/Pyloric Microbiota Composition within a Honey Bee Apiary throughout a Season. Microbes Environ (2015) 0.78
Use of DNA quantification to measure growth and autolysis of Lactococcus and Propionibacterium spp. in mixed populations. Appl Environ Microbiol (2006) 0.77
De novo semi-alignment of 16S rRNA gene sequences for deep phylogenetic characterization of next generation sequencing data. Microbes Environ (2013) 0.77
The effect of crowding stress on bacterial growth and sensory properties of chilled Atlantic salmon fillets. J Food Sci (2012) 0.77
Microarray-based genotyping of Salmonella: inter-laboratory evaluation of reproducibility and standardization potential. Int J Food Microbiol (2010) 0.76
Diet-Dependent Modular Dynamic Interactions of the Equine Cecal Microbiota. Microbes Environ (2016) 0.75
Motivation for choice and healthiness perception of calorie-reduced dairy products. a cross-cultural study. Appetite (2010) 0.75
MALDI-TOF mass spectrometry for quantitative gene expression analysis of acid responses in Staphylococcus aureus. J Microbiol Methods (2009) 0.75
Lamb meat--importance of origin and grazing system for Italian and Norwegian consumers. Meat Sci (2011) 0.75
Dynamics of plc gene transcription and alpha-toxin production during growth of Clostridium perfringens strains with contrasting alpha-toxin production. Vet Microbiol (2009) 0.75
Consumers liking of private labels. An evaluation of intrinsic and extrinsic orange juice cues. Appetite (2011) 0.75
Multilocus sequence typing for investigation of diversity of Campylobacter jejuni strains from humans and environment in Norway. Acta Vet Hung (2009) 0.75
Direct detection of single-nucleotide polymorphisms in bacterial DNA by SNPtrap. Prep Biochem Biotechnol (2011) 0.75