Genomic plasticity of the MHC class I A region in rhesus macaques: extensive haplotype diversity at the population level as revealed by microsatellites.

PubWeight™: 0.97‹?› | Rank: Top 15%

🔗 View Article (PMC 3019358)

Published in Immunogenetics on October 15, 2010

Authors

Gaby G M Doxiadis1, Nanine de Groot, Nel Otting, Jeroen H Blokhuis, Ronald E Bontrop

Author Affiliations

1: Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 161, 2288, Rijswijk, The Netherlands. doxiadis@bprc.nl

Articles citing this

Screening and confirmatory testing of MHC class I alleles in pig-tailed macaques. Immunogenetics (2011) 1.05

Haplessly hoping: macaque major histocompatibility complex made easy. ILAR J (2013) 1.02

Major histocompatibility complex class I haplotype diversity in Chinese rhesus macaques. G3 (Bethesda) (2013) 0.98

Haplotype diversity generated by ancient recombination-like events in the MHC of Indian rhesus macaques. Immunogenetics (2013) 0.94

Cattle MHC nomenclature: is it possible to assign sequences to discrete class I genes? Immunogenetics (2012) 0.90

Constraints on haplotype structure and variable gene frequencies suggest a functional hierarchy within cattle MHC class I. Immunogenetics (2012) 0.86

Diversity of MHC class I haplotypes in cynomolgus macaques. Immunogenetics (2011) 0.85

Co-evolution of MHC class I and variable NK cell receptors in placental mammals. Immunol Rev (2015) 0.85

Multiple divergent haplotypes express completely distinct sets of class I MHC genes in zebrafish. Immunogenetics (2013) 0.83

Sequence of a complete chicken BG haplotype shows dynamic expansion and contraction of two gene lineages with particular expression patterns. PLoS Genet (2014) 0.83

Preliminary observations of MHC class I A region polymorphism in three populations of Chinese-origin rhesus macaques. Immunogenetics (2012) 0.82

Multilocus definition of MHC haplotypes in pedigreed cynomolgus macaques (Macaca fascicularis). Immunogenetics (2012) 0.81

Natural selection on marine carnivores elaborated a diverse family of classical MHC class I genes exhibiting haplotypic gene content variation and allelic polymorphism. Immunogenetics (2012) 0.80

Immunogenetic characterization of a captive colony of sooty mangabeys (Cercocebus atys) used for SIV research. J Med Primatol (2015) 0.80

Co-evolution of the MHC class I and KIR gene families in rhesus macaques: ancestry and plasticity. Immunol Rev (2015) 0.80

Mamu-B genes and their allelic repertoires in different populations of Chinese-origin rhesus macaques. Immunogenetics (2012) 0.80

MHC and KIR Polymorphisms in Rhesus Macaque SIV Infection. Front Immunol (2015) 0.79

Chinese origin rhesus macaque major histocompatibility complex class I molecules promiscuously present epitopes from SIV associated with molecules of Indian origin; implications for immunodominance and viral escape. Immunogenetics (2011) 0.78

The assembly and characterisation of two structurally distinct cattle MHC class I haplotypes point to the mechanisms driving diversity. Immunogenetics (2015) 0.77

Differential recombination dynamics within the MHC of macaque species. Immunogenetics (2014) 0.77

KIR3DL01 upregulation on gut natural killer cells in response to SIV infection of KIR- and MHC class I-defined rhesus macaques. PLoS Pathog (2017) 0.75

Characterization of major histocompatibility complex class I, and class II DRB loci of captive and wild Indian leopards (Panthera pardus fusca). Genetica (2017) 0.75

Identification of MHC class I sequences in four species of Macaca of China. Immunogenetics (2013) 0.75

Articles cited by this

IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex. Nucleic Acids Res (2003) 5.64

Impact of MHC class I diversity on immune control of immunodeficiency virus replication. Nat Rev Immunol (2008) 5.17

Evolution by the birth-and-death process in multigene families of the vertebrate immune system. Proc Natl Acad Sci U S A (1997) 4.83

Retrotransposons revisited: the restraint and rehabilitation of parasites. Cell (2008) 4.19

Mamu-B*08-positive macaques control simian immunodeficiency virus replication. J Virol (2007) 3.61

Nomenclature for factors of the HLA system, 2010. Tissue Antigens (2010) 3.22

SIV(mac) pathogenesis in rhesus macaques of Chinese and Indian origin compared with primary HIV infections in humans. AIDS (2002) 3.19

Major histocompatibility complex class I alleles associated with slow simian immunodeficiency virus disease progression bind epitopes recognized by dominant acute-phase cytotoxic-T-lymphocyte responses. J Virol (2003) 3.06

Dominance of CD8 responses specific for epitopes bound by a single major histocompatibility complex class I molecule during the acute phase of viral infection. J Virol (2002) 2.50

Unparalleled complexity of the MHC class I region in rhesus macaques. Proc Natl Acad Sci U S A (2005) 2.41

Simian immunodeficiency virus SIVmac239 infection of major histocompatibility complex-identical cynomolgus macaques from Mauritius. J Virol (2006) 2.38

Genetic divergence of the rhesus macaque major histocompatibility complex. Genome Res (2004) 2.32

Comparative genomics of major histocompatibility complexes. Immunogenetics (2004) 2.31

The MHC class I genes of the rhesus monkey. Different evolutionary histories of MHC class I and II genes in primates. J Immunol (1996) 1.98

Single nucleotide polymorphisms (SNPs) distinguish Indian-origin and Chinese-origin rhesus macaques (Macaca mulatta). BMC Genomics (2007) 1.87

Major histocompatibility complex genotyping with massively parallel pyrosequencing. Nat Med (2009) 1.86

Microsatellite typing of the rhesus macaque MHC region. Immunogenetics (2005) 1.69

Genomics of the major histocompatibility complex: haplotypes, duplication, retroviruses and disease. Immunol Rev (1999) 1.65

Mitochondrial DNA variation in Chinese and Indian rhesus macaques (Macaca mulatta). Am J Primatol (2005) 1.63

MHC class I A region diversity and polymorphism in macaque species. Immunogenetics (2007) 1.63

Non-human primates: essential partners in biomedical research. Immunol Rev (2001) 1.61

Two MHC class I molecules associated with elite control of immunodeficiency virus replication, Mamu-B*08 and HLA-B*2705, bind peptides with sequence similarity. J Immunol (2009) 1.57

ISAG/IUIS-VIC Comparative MHC Nomenclature Committee report, 2005. Immunogenetics (2006) 1.52

Identification of MHC class I sequences in Chinese-origin rhesus macaques. Immunogenetics (2007) 1.50

MHC polymorphism: AIDS susceptibility in non-human primates. Trends Immunol (2005) 1.48

Rhesus macaque class I duplicon structures, organization, and evolution within the alpha block of the major histocompatibility complex. Mol Biol Evol (2004) 1.40

Rapid evolution of major histocompatibility complex class I genes in primates generates new disease alleles in humans via hitchhiking diversity. Genetics (2006) 1.37

Stress management: MHC class I and class I-like molecules as reporters of cellular stress. Immunity (2003) 1.36

LINE dancing in the human genome: transposable elements and disease. Genome Med (2009) 1.33

MHC class I characterization of Indonesian cynomolgus macaques. Immunogenetics (2008) 1.26

Control of simian immunodeficiency virus SIVmac239 is not predicted by inheritance of Mamu-B*17-containing haplotypes. J Virol (2006) 1.22

The HLA system: structure and function. J Clin Pathol (1987) 1.22

Divergence population genetic analysis of hybridization between rhesus and cynomolgus macaques. Mol Ecol (2009) 1.21

A snapshot of the Mamu-B genes and their allelic repertoire in rhesus macaques of Chinese origin. Immunogenetics (2008) 1.20

Multiple sclerosis and the major histocompatibility complex. Curr Opin Neurol (2009) 1.19

Unprecedented polymorphism of Mhc-DRB region configurations in rhesus macaques. J Immunol (2000) 1.17

Polymorphism and evolution of HLA class I and II genes and molecules. Rev Immunogenet (1999) 1.15

Female choice and the MHC. Trends Immunol (2005) 1.14

Evolution of major histocompatibility complex polymorphisms and T-cell receptor diversity in primates. Immunol Rev (1995) 1.14

Single nucleotide polymorphisms (SNPs) are highly conserved in rhesus (Macaca mulatta) and cynomolgus (Macaca fascicularis) macaques. BMC Genomics (2007) 1.13

Modeling human arthritic diseases in nonhuman primates. Arthritis Res Ther (2005) 1.11

Genetic determinants of HIV-1 infection and progression to AIDS: immune response genes. Tissue Antigens (2009) 1.11

HIV-1 diversity versus HLA class I polymorphism. Trends Immunol (2005) 1.11

Characterization of 47 MHC class I sequences in Filipino cynomolgus macaques. Immunogenetics (2008) 1.10

A highly divergent microsatellite facilitating fast and accurate DRB haplotyping in humans and rhesus macaques. Proc Natl Acad Sci U S A (2007) 1.08

AIDS-protective HLA-B*27/B*57 and chimpanzee MHC class I molecules target analogous conserved areas of HIV-1/SIVcpz. Proc Natl Acad Sci U S A (2010) 1.04

Genetic susceptibility to rheumatoid arthritis: an emerging picture. Arthritis Rheum (2009) 1.04

Effects of MHC class I on HIV/SIV disease in primates. AIDS (2002) 1.02

Major histocompatibility complex class I genes in primates: co-evolution with pathogens. Immunol Rev (1999) 1.02

Diversity of MHC class I genes in Burmese-origin rhesus macaques. Immunogenetics (2010) 1.01

The most common Chinese rhesus macaque MHC class I molecule shares peptide binding repertoire with the HLA-B7 supertype. Immunogenetics (2010) 0.95

Reshuffling of ancient peptide binding motifs between HLA-DRB multigene family members: old wine served in new skins. Mol Immunol (2008) 0.93

Comparative genetics of a highly divergent DRB microsatellite in different macaque species. Immunogenetics (2008) 0.93

Definition of Mafa-A and -B haplotypes in pedigreed cynomolgus macaques (Macaca fascicularis). Immunogenetics (2009) 0.91

Genomic plasticity of the immune-related Mhc class I B region in macaque species. BMC Genomics (2008) 0.91

Different modes of Mhc evolution in primates. Mol Biol Evol (1993) 0.90

Extensive DRB region diversity in cynomolgus macaques: recombination as a driving force. Immunogenetics (2010) 0.89

Comparison between two human endogenous retrovirus (HERV)-rich regions within the major histocompatibility complex. J Mol Evol (1999) 0.88

The evolution of MHC diversity by segmental duplication and transposition of retroelements. J Mol Evol (1997) 0.88

Non-human primate models of experimental autoimmune encephalomyelitis: Variations on a theme. J Neuroimmunol (2005) 0.88

Rhesus macaque MHC class I molecules show differential subcellular localizations. Immunogenetics (2010) 0.88

The chimpanzee Mhc-DRB region revisited: gene content, polymorphism, pseudogenes, and transcripts. Mol Immunol (2009) 0.86

Determination of a major histocompatibility complex class I restricting simian immunodeficiency virus Gag241-249 epitope. AIDS (2008) 0.86

Integration of microsatellite characteristics in the MHC region: a literature and sequence based analysis. Tissue Antigens (2004) 0.85

It takes six to boogie: allocating cadaver kidneys in Eurotransplant. Transplantation (2004) 0.85

Compound evolutionary history of the rhesus macaque MHC class I B region revealed by microsatellite analysis and localization of retroviral sequences. PLoS One (2009) 0.84

High resolution definition of HLA-DRB haplotypes by a simplified microsatellite typing technique. Tissue Antigens (2009) 0.81

The impact of the major histocompatibility complex on graft survival and disease susceptibility. Genetics (1975) 0.76

Articles by these authors

Intra- and interspecific variation in primate gene expression patterns. Science (2002) 7.92

Comparison of fine-scale recombination rates in humans and chimpanzees. Science (2005) 7.86

Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination. Science (2009) 7.35

Great ape genetic diversity and population history. Nature (2013) 2.95

Unparalleled complexity of the MHC class I region in rhesus macaques. Proc Natl Acad Sci U S A (2005) 2.41

Microsatellite typing of the rhesus macaque MHC region. Immunogenetics (2005) 1.69

MHC class I A region diversity and polymorphism in macaque species. Immunogenetics (2007) 1.63

ISAG/IUIS-VIC Comparative MHC Nomenclature Committee report, 2005. Immunogenetics (2006) 1.52

Evidence for an ancient selective sweep in the MHC class I gene repertoire of chimpanzees. Proc Natl Acad Sci U S A (2002) 1.39

Extensive sharing of MHC class II alleles between rhesus and cynomolgus macaques. Immunogenetics (2006) 1.36

Evolution and diversity of copy number variation in the great ape lineage. Genome Res (2013) 1.29

Evolutionary stability of MHC class II haplotypes in diverse rhesus macaque populations. Immunogenetics (2003) 1.26

Nomenclature report on the major histocompatibility complex genes and alleles of Great Ape, Old and New World monkey species. Immunogenetics (2012) 1.23

A snapshot of the Mamu-B genes and their allelic repertoire in rhesus macaques of Chinese origin. Immunogenetics (2008) 1.20

Genetic makeup of the DR region in rhesus macaques: gene content, transcripts, and pseudogenes. J Immunol (2004) 1.18

Nomenclature for Factors of the HLA System, 2004. Hum Immunol (2005) 1.14

The Impact of MicroRNAs on Brain Aging and Neurodegeneration. Curr Gerontol Geriatr Res (2012) 1.14

Genome-wide analysis of miRNA expression reveals a potential role for miR-144 in brain aging and spinocerebellar ataxia pathogenesis. Neurobiol Aging (2010) 1.13

Microarray analysis of nonhuman primates: validation of experimental models in neurological disorders. FASEB J (2003) 1.13

Modeling human arthritic diseases in nonhuman primates. Arthritis Res Ther (2005) 1.11

A highly divergent microsatellite facilitating fast and accurate DRB haplotyping in humans and rhesus macaques. Proc Natl Acad Sci U S A (2007) 1.08

The mosaic of KIR haplotypes in rhesus macaques. Immunogenetics (2010) 1.07

AIDS-protective HLA-B*27/B*57 and chimpanzee MHC class I molecules target analogous conserved areas of HIV-1/SIVcpz. Proc Natl Acad Sci U S A (2010) 1.04

Site-directed mutagenesis of the Nidovirus replicative endoribonuclease NendoU exerts pleiotropic effects on the arterivirus life cycle. J Virol (2006) 1.04

Extensive Mhc-DQB variation in humans and non-human primate species. Immunogenetics (2002) 1.04

Effects of MHC class I on HIV/SIV disease in primates. AIDS (2002) 1.02

Reactivation by exon shuffling of a conserved HLA-DR3-like pseudogene segment in a New World primate species. Proc Natl Acad Sci U S A (2006) 1.01

An unusual mode of concerted evolution of the EGF-TM7 receptor chimera EMR2. FASEB J (2006) 1.01

Genomic tools for evolution and conservation in the chimpanzee: Pan troglodytes ellioti is a genetically distinct population. PLoS Genet (2012) 1.00

Pinpointing a selective sweep to the chimpanzee MHC class I region by comparative genomics. Mol Ecol (2008) 0.99

Unravelling the T-cell-mediated autoimmune attack on CNS myelin in a new primate EAE model induced with MOG34-56 peptide in incomplete adjuvant. Eur J Immunol (2011) 0.98

A novel gastrokine, Gkn3, marks gastric atrophy and shows evidence of adaptive gene loss in humans. Gastroenterology (2010) 0.96

Haplotype diversity generated by ancient recombination-like events in the MHC of Indian rhesus macaques. Immunogenetics (2013) 0.94

Chronic hepatitis C virus infection established and maintained in chimpanzees independent of dendritic cell impairment. Hepatology (2003) 0.94

A splice site mutation converts an inhibitory killer cell Ig-like receptor into an activating one. Mol Immunol (2008) 0.94

Reshuffling of ancient peptide binding motifs between HLA-DRB multigene family members: old wine served in new skins. Mol Immunol (2008) 0.93

Comparative genetics of a highly divergent DRB microsatellite in different macaque species. Immunogenetics (2008) 0.93

Definition of Mafa-A and -B haplotypes in pedigreed cynomolgus macaques (Macaca fascicularis). Immunogenetics (2009) 0.91

Genomic plasticity of the immune-related Mhc class I B region in macaque species. BMC Genomics (2008) 0.91

Molecular evolution of the human SRPX2 gene that causes brain disorders of the Rolandic and Sylvian speech areas. BMC Genet (2007) 0.90

Impact of endogenous intronic retroviruses on major histocompatibility complex class II diversity and stability. J Virol (2008) 0.90

DR haplotype diversity of the cynomolgus macaque as defined by its transcriptome. Immunogenetics (2011) 0.90

Evidence for balancing selection acting on KIR2DL4 genotypes in rhesus macaques of Indian origin. Immunogenetics (2009) 0.90

Extensive DRB region diversity in cynomolgus macaques: recombination as a driving force. Immunogenetics (2010) 0.89

A prevalent POLG CAG microsatellite length allele in humans and African great apes. Mamm Genome (2004) 0.89

Reduced MIC gene repertoire variation in West African chimpanzees as compared to humans. Mol Biol Evol (2005) 0.89

Nomenclature for factors of the HLA system, 2002. Hum Immunol (2002) 0.88

The HIV-1 pandemic: does the selective sweep in chimpanzees mirror humankind's future? Retrovirology (2013) 0.87

The extreme plasticity of killer cell Ig-like receptor (KIR) haplotypes differentiates rhesus macaques from humans. Eur J Immunol (2011) 0.87

The chimpanzee Mhc-DRB region revisited: gene content, polymorphism, pseudogenes, and transcripts. Mol Immunol (2009) 0.86

Compound evolutionary history of the rhesus macaque MHC class I B region revealed by microsatellite analysis and localization of retroviral sequences. PLoS One (2009) 0.84

DNA/long peptide vaccination against conserved regions of SIV induces partial protection against SIVmac251 challenge. AIDS (2013) 0.83

The repertoire of MHC class I genes in the common marmoset: evidence for functional plasticity. Immunogenetics (2013) 0.82

A comparative analysis of viral peptides presented by contemporary human and chimpanzee MHC class I molecules. J Immunol (2011) 0.81

Multilocus definition of MHC haplotypes in pedigreed cynomolgus macaques (Macaca fascicularis). Immunogenetics (2012) 0.81

Correlated evolution of nucleotide substitution rates and allelic variation in Mhc-DRB lineages of primates. BMC Evol Biol (2009) 0.81

Nomenclature for factors of the HLA system, 2002. Eur J Immunogenet (2002) 0.81

A large panel of microsatellite markers for genetic studies in the infra-order catarrhini. Folia Primatol (Basel) (2009) 0.80

Immunization with recombinant HLA classes I and II, HIV-1 gp140, and SIV p27 elicits protection against heterologous SHIV infection in rhesus macaques. J Virol (2011) 0.80

High diversity of MIC genes in non-human primates. Immunogenetics (2014) 0.78

Evaluation of IL-28B polymorphisms and serum IP-10 in hepatitis C infected chimpanzees. PLoS One (2012) 0.77

Evolution of HLA-DRB genes. Mol Biol Evol (2012) 0.77

Differential recombination dynamics within the MHC of macaque species. Immunogenetics (2014) 0.77

Specific nature of cellular immune responses elicited by chimpanzees against HIV-1. Hum Immunol (2003) 0.76

Functional Annotation of Small Noncoding RNAs Target Genes Provides Evidence for a Deregulated Ubiquitin-Proteasome Pathway in Spinocerebellar Ataxia Type 1. J Nucleic Acids (2012) 0.76

Unique peptide-binding motif for Mamu-B*037:01: an MHC class I allele common to Indian and Chinese rhesus macaques. Immunogenetics (2013) 0.75

No difference in Gag and Env immune-response profiles between vaccinated and non-vaccinated rhesus macaques that control immunodeficiency virus replication. J Gen Virol (2010) 0.75