PubRank

Daniel J Rigden

Author PubWeight™ 68.02‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Mammalian Atg18 (WIPI2) localizes to omegasome-anchored phagophores and positively regulates LC3 lipidation. Autophagy 2010 2.91
2 The protein that binds to DNA base J in trypanosomatids has features of a thymidine hydroxylase. Nucleic Acids Res 2007 2.19
3 Family-wide characterization of the DENN domain Rab GDP-GTP exchange factors. J Cell Biol 2010 2.11
4 Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Genome Biol 2013 1.62
5 Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes. Environ Microbiol 2012 1.59
6 Plant-like traits associated with metabolism of Trypanosoma parasites. Proc Natl Acad Sci U S A 2003 1.59
7 Deubiquitylases from genes to organism. Physiol Rev 2013 1.54
8 Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1. Genome Biol 2008 1.39
9 Plant alpha-amylase inhibitors and their interaction with insect alpha-amylases. Eur J Biochem 2002 1.38
10 Autophagy in protists. Autophagy 2011 1.29
11 Weeds, worms, and more. Papain's long-lost cousin, phytochelatin synthase. Plant Physiol 2004 1.27
12 The 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection. Nucleic Acids Res 2013 1.26
13 Rab14 and its exchange factor FAM116 link endocytic recycling and adherens junction stability in migrating cells. Dev Cell 2012 1.23
14 Autophagy in parasitic protists: unique features and drug targets. Mol Biochem Parasitol 2011 1.19
15 AMPLE: a cluster-and-truncate approach to solve the crystal structures of small proteins using rapidly computed ab initio models. Acta Crystallogr D Biol Crystallogr 2012 1.15
16 Order within a mosaic distribution of mitochondrial c-type cytochrome biogenesis systems? FEBS J 2008 1.11
17 Systematic survey of deubiquitinase localization identifies USP21 as a regulator of centrosome- and microtubule-associated functions. Mol Biol Cell 2012 1.06
18 Autophagy and related processes in trypanosomatids: insights from genomic and bioinformatic analyses. Autophagy 2006 1.05
19 Cathepsin L digestion of nanobioconjugates upon endocytosis. ACS Nano 2009 1.05
20 Structural flexibility in Trypanosoma brucei enolase revealed by X-ray crystallography and molecular dynamics. FEBS J 2007 1.03
21 L-Ascorbic acid 6-hexadecanoate, a potent hyaluronidase inhibitor. X-ray structure and molecular modeling of enzyme-inhibitor complexes. J Biol Chem 2004 1.02
22 Mining metagenomic data for novel domains: BACON, a new carbohydrate-binding module. FEBS Lett 2010 1.02
23 A new type of antimicrobial protein with multiple histidines from the hard tick, Amblyomma hebraeum. FASEB J 2004 1.00
24 Identification of differentially expressed cDNA sequences in ovaries of sexual and apomictic plants of Brachiaria brizantha. Plant Mol Biol 2003 0.97
25 CUCU modification of mRNA promotes decapping and transcript degradation in Aspergillus nidulans. Mol Cell Biol 2009 0.95
26 Inhibition of trypsin by cowpea thionin: characterization, molecular modeling, and docking. Proteins 2002 0.95
27 The putative effector-binding site of Leishmania mexicana pyruvate kinase studied by site-directed mutagenesis. FEBS Lett 2002 0.93
28 Regulation of ecdysteroid signalling during Drosophila development: identification, characterization and modelling of ecdysone oxidase, an enzyme involved in control of ligand concentration. Biochem J 2005 0.93
29 Characterization and functional investigation of an Arabidopsis cDNA encoding a homologue to the d-PGMase superfamily. J Exp Bot 2005 0.93
30 Sequence analysis and characterization of a novel fibronectin-binding repeat domain from the surface of Streptococcus pneumoniae. OMICS 2004 0.91
31 Evaluating caveolin interactions: do proteins interact with the caveolin scaffolding domain through a widespread aromatic residue-rich motif? PLoS One 2012 0.90
32 Improving Cry8Ka toxin activity towards the cotton boll weevil (Anthonomus grandis). BMC Biotechnol 2011 0.89
33 Mutagenic definition of a papain-like catalytic triad, sufficiency of the N-terminal domain for single-site core catalytic enzyme acylation, and C-terminal domain for augmentative metal activation of a eukaryotic phytochelatin synthase. Plant Physiol 2006 0.89
34 An unsuspected ecdysteroid/steroid phosphatase activity in the key T-cell regulator, Sts-1: surprising relationship to insect ecdysteroid phosphate phosphatase. Proteins 2007 0.87
35 mRNA 3' tagging is induced by nonsense-mediated decay and promotes ribosome dissociation. Mol Cell Biol 2012 0.87
36 The structure-function relationship in the clostripain family of peptidases. Eur J Biochem 2004 0.87
37 Structural variability of the ubiquitin specific protease DUSP-UBL double domains. FEBS Lett 2011 0.86
38 The crystal structure of Trypanosoma brucei enolase: visualisation of the inhibitory metal binding site III and potential as target for selective, irreversible inhibition. J Mol Biol 2003 0.84
39 Characterization of the ligandin site of maize glutathione S-transferase I. Biochem J 2004 0.84
40 Kinetic characterization, structure modelling studies and crystallization of Trypanosoma brucei enolase. Eur J Biochem 2003 0.84
41 Evolutionary analysis of fructose 2,6-bisphosphate metabolism. IUBMB Life 2006 0.84
42 Identification of novel aspartic proteases from Strongyloides ratti and characterisation of their evolutionary relationships, stage-specific expression and molecular structure. BMC Genomics 2009 0.83
43 Identification, characterization and essentiality of the unusual peroxin 13 from Trypanosoma brucei. Biochim Biophys Acta 2009 0.83
44 Prediction of antimicrobial peptides based on the adaptive neuro-fuzzy inference system application. Biopolymers 2012 0.83
45 Distinct roles for Caf1, Ccr4, Edc3 and CutA in the co-ordination of transcript deadenylation, decapping and P-body formation in Aspergillus nidulans. Mol Microbiol 2010 0.82
46 Acyl carrier protein phosphodiesterase (AcpH) of Escherichia coli is a non-canonical member of the HD phosphatase/phosphodiesterase family. Biochemistry 2007 0.82
47 Leishmania donovani phosphofructokinase. Gene characterization, biochemical properties and structure-modeling studies. Eur J Biochem 2002 0.81
48 Trypanosomes contain two highly different isoforms of peroxin PEX13 involved in glycosome biogenesis. FEBS Lett 2012 0.81
49 Monomorphic subtelomeric DNA in the filamentous fungus, Metarhizium anisopliae,contains a RecQ helicase-like gene. Mol Genet Genomics 2005 0.81
50 6-Phosphofructo-2-kinase and fructose-2,6-bisphosphatase in Trypanosomatidae. Molecular characterization, database searches, modelling studies and evolutionary analysis. FEBS J 2005 0.81
51 Crystal structure of the nipah virus phosphoprotein tetramerization domain. J Virol 2013 0.81
52 Use of phage display to select novel cystatins specific for Acanthoscelides obtectus cysteine proteinases. Biochim Biophys Acta 2003 0.81
53 Ubiquitination of the glycosomal matrix protein receptor PEX5 in Trypanosoma brucei by PEX4 displays novel features. Biochim Biophys Acta 2013 0.80
54 Engineering the pH-dependence of kinetic parameters of maize glutathione S-transferase I by site-directed mutagenesis. Biomol Eng 2004 0.80
55 Molecular basis for the fold organization and sarcomeric targeting of the muscle atrogin MuRF1. Open Biol 2014 0.80
56 Mechanistic and functional diversity in the mechanosensory kinases of the titin-like family. Biochem Soc Trans 2013 0.79
57 Molecular modeling and inhibitory activity of cowpea cystatin against bean bruchid pests. Proteins 2006 0.79
58 Genome-based identification and characterization of a putative mucin-binding protein from the surface of Streptococcus pneumoniae. Proteins 2007 0.79
59 Overlapping binding sites for trypsin and papain on a Kunitz-type proteinase inhibitor from Prosopis juliflora. Proteins 2002 0.79
60 Fold recognition analysis of glycosyltransferase families: further members of structural superfamilies. Glycobiology 2003 0.79
61 Characterisation of a desmosterol reductase involved in phytosterol dealkylation in the silkworm, Bombyx mori. PLoS One 2011 0.79
62 Conversion of a disulfide bond into a thioacetal group during echinomycin biosynthesis. Angew Chem Int Ed Engl 2014 0.78
63 Comparative genomics of the anopheline glutathione S-transferase epsilon cluster. PLoS One 2011 0.78
64 Application of the AMPLE cluster-and-truncate approach to NMR structures for molecular replacement. Acta Crystallogr D Biol Crystallogr 2013 0.77
65 Molecular cloning of alpha-amylases from cotton boll weevil, Anthonomus grandis and structural relations to plant inhibitors: an approach to insect resistance. J Protein Chem 2003 0.76
66 Ferric iron uptake genes are differentially expressed in the presence of copper sulfides in Acidithiobacillus ferrooxidans strain LR. Antonie Van Leeuwenhoek 2010 0.75
67 Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase. BMC Bioinformatics 2014 0.75
68 A diverse family of serine proteinase genes expressed in cotton boll weevil (Anthonomus grandis): implications for the design of pest-resistant transgenic cotton plants. Insect Biochem Mol Biol 2004 0.75
69 A new family of bacterial DNA repair proteins annotated by the integration of non-homology, distant homology and structural bioinformatic methods. FEBS Lett 2012 0.75
70 Nucleotide sequence and phylogenetic analyses of the DNA polymerase gene of Anticarsia gemmatalis nucleopolyhedrovirus. Virus Res 2005 0.75