Published in Plant Physiol on December 27, 2010
The formation and function of plant cuticles. Plant Physiol (2013) 2.11
Increased lodging resistance in long-culm, low-lignin gh2 rice for improved feed and bioenergy production. Sci Rep (2014) 1.04
Navigating the transcriptional roadmap regulating plant secondary cell wall deposition. Front Plant Sci (2013) 1.01
Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress. Nat Commun (2014) 1.00
Transcriptional Regulation of Grass Secondary Cell Wall Biosynthesis: Playing Catch-Up with Arabidopsis thaliana. Front Plant Sci (2012) 0.98
Integrated -omics: a powerful approach to understanding the heterogeneous lignification of fibre crops. Int J Mol Sci (2013) 0.91
Identification and Molecular Characterization of the Switchgrass AP2/ERF Transcription Factor Superfamily, and Overexpression of PvERF001 for Improvement of Biomass Characteristics for Biofuel. Front Bioeng Biotechnol (2015) 0.89
Systems and synthetic biology approaches to alter plant cell walls and reduce biomass recalcitrance. Plant Biotechnol J (2014) 0.87
The MYB46/MYB83-mediated transcriptional regulatory programme is a gatekeeper of secondary wall biosynthesis. Ann Bot (2014) 0.87
De novo sequencing and assembly analysis of transcriptome in the Sodom apple (Calotropis gigantea). BMC Genomics (2015) 0.85
De novo assembly, transcriptome characterization, lignin accumulation, and anatomic characteristics: novel insights into lignin biosynthesis during celery leaf development. Sci Rep (2015) 0.85
Transcriptome profiling of leaf elongation zone under drought in contrasting rice cultivars. PLoS One (2013) 0.84
Xylem transcription profiles indicate potential metabolic responses for economically relevant characteristics of Eucalyptus species. BMC Genomics (2013) 0.84
Overexpression of AtLOV1 in Switchgrass alters plant architecture, lignin content, and flowering time. PLoS One (2012) 0.84
Rice GROWTH UNDER DROUGHT KINASE is required for drought tolerance and grain yield under normal and drought stress conditions. Plant Physiol (2014) 0.83
Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato. Int J Mol Sci (2014) 0.82
Development of feedstocks for cellulosic biofuels. F1000 Biol Rep (2012) 0.81
Characterization of microRNAs expressed during secondary wall biosynthesis in Acacia mangium. PLoS One (2012) 0.81
The Glycerol-3-Phosphate Acyltransferase GPAT6 from Tomato Plays a Central Role in Fruit Cutin Biosynthesis. Plant Physiol (2016) 0.81
RICE SALT SENSITIVE3 binding to bHLH and JAZ factors mediates control of cell wall plasticity in the root apex. Plant Signal Behav (2013) 0.79
Co-expression network analysis reveals transcription factors associated to cell wall biosynthesis in sugarcane. Plant Mol Biol (2016) 0.78
Transcriptional regulators of Arabidopsis secondary cell wall formation: tools to re-program and improve cell wall traits. Front Plant Sci (2014) 0.78
Identification and Overexpression of a Knotted1-Like Transcription Factor in Switchgrass (Panicum virgatum L.) for Lignocellulosic Feedstock Improvement. Front Plant Sci (2016) 0.77
Dissection of early transcriptional responses to water stress in Arundo donax L. by unigene-based RNA-seq. Biotechnol Biofuels (2016) 0.77
Extensive functional pleiotropy of REVOLUTA substantiated through forward genetics. Plant Physiol (2013) 0.77
Overexpression of MusaMYB31, a R2R3 type MYB transcription factor gene indicate its role as a negative regulator of lignin biosynthesis in banana. PLoS One (2017) 0.75
Emerging Technologies for the Production of Renewable Liquid Transport Fuels from Biomass Sources Enriched in Plant Cell Walls. Front Plant Sci (2016) 0.75
Insights into the Role of the Berry-Specific Ethylene Responsive Factor VviERF045. Front Plant Sci (2016) 0.75
Functional Characterization of Populus PsnSHN2 in Coordinated Regulation of Secondary Wall Components in Tobacco. Sci Rep (2017) 0.75
Lignification of Sheepgrass Internodes at Different Developmental Stages and Associated Alteration of Cell Wall Saccharification Efficiency. Front Plant Sci (2017) 0.75
Impact of Silicon in Plant Biomass Production: Focus on Bast Fibres, Hypotheses, and Perspectives. Plants (Basel) (2017) 0.75
Genetic engineering of grass cell wall polysaccharides for biorefining. Plant Biotechnol J (2017) 0.75
RECoN: Rice Environment Coexpression Network for Systems Level Analysis of Abiotic-Stress Response. Front Plant Sci (2017) 0.75
Nitrogen fertilizer application affects lodging resistance by altering secondary cell wall synthesis in japonica rice (Oryza sativa). J Plant Res (2017) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods (2001) 414.27
Bioconductor: open software development for computational biology and bioinformatics. Genome Biol (2004) 143.19
Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res (2003) 103.76
Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol (2004) 101.91
Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics (2003) 100.88
Statistical significance for genomewide studies. Proc Natl Acad Sci U S A (2003) 88.64
WebLogo: a sequence logo generator. Genome Res (2004) 59.58
Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data. Nucleic Acids Res (2005) 17.58
NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res (2008) 17.35
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J Mol Biol (2001) 16.47
Semimicro determination of cellulose in biological materials. Anal Biochem (1969) 14.31
Reverse engineering of regulatory networks in human B cells. Nat Genet (2005) 13.16
Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res (1999) 13.02
Structure and function of the feed-forward loop network motif. Proc Natl Acad Sci U S A (2003) 12.50
ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Res (2008) 12.45
Lignin biosynthesis. Annu Rev Plant Biol (2003) 11.46
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS Biol (2007) 10.46
An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets. PLoS One (2007) 9.60
The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res (2006) 8.26
Genome-wide analysis of Foxp3 target genes in developing and mature regulatory T cells. Nature (2007) 7.04
Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element. Plant Cell (1995) 6.58
Hemicelluloses. Annu Rev Plant Biol (2010) 5.42
STAMP: a web tool for exploring DNA-binding motif similarities. Nucleic Acids Res (2007) 4.92
A universal framework for regulatory element discovery across all genomes and data types. Mol Cell (2007) 4.50
Transcription switches for protoxylem and metaxylem vessel formation. Genes Dev (2005) 4.47
Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets. Proc Natl Acad Sci U S A (2005) 4.45
Cellulose synthesis in higher plants. Annu Rev Cell Dev Biol (2006) 4.15
The moments of the z and F distributions. Biometrika (1949) 3.92
Expression in plants of two bacterial antibiotic resistance genes after protoplast transformation with a new plant expression vector. Nucleic Acids Res (1986) 3.64
Lignin biosynthesis and structure. Plant Physiol (2010) 3.60
Repression of lignin biosynthesis promotes cellulose accumulation and growth in transgenic trees. Nat Biotechnol (1999) 3.04
SND1, a NAC domain transcription factor, is a key regulator of secondary wall synthesis in fibers of Arabidopsis. Plant Cell (2006) 3.00
The SHINE clade of AP2 domain transcription factors activates wax biosynthesis, alters cuticle properties, and confers drought tolerance when overexpressed in Arabidopsis. Plant Cell (2004) 2.90
The AmMYB308 and AmMYB330 transcription factors from antirrhinum regulate phenylpropanoid and lignin biosynthesis in transgenic tobacco Plant Cell (1998) 2.81
Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell Environ (2009) 2.76
MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis. Plant Cell (2009) 2.57
A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies. Nat Genet (2009) 2.53
Improvement of biomass through lignin modification. Plant J (2008) 2.47
Lignin engineering. Curr Opin Plant Biol (2008) 2.40
How confident can we be that orthologs are similar, but paralogs differ? Trends Genet (2009) 2.21
BRITTLE CULM1, which encodes a COBRA-like protein, affects the mechanical properties of rice plants. Plant Cell (2003) 2.19
WIN1, a transcriptional activator of epidermal wax accumulation in Arabidopsis. Proc Natl Acad Sci U S A (2004) 2.18
Carbon partitioning to cellulose synthesis. Plant Mol Biol (2001) 2.06
Culm strength of barley : correlation among maximum bending stress, cell wall dimensions, and cellulose content. Plant Physiol (1989) 1.97
Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall. Plant Physiol (2003) 1.90
Arabidopsis WUSCHEL is a bifunctional transcription factor that acts as a repressor in stem cell regulation and as an activator in floral patterning. Plant Cell (2009) 1.89
The transcription factor WIN1/SHN1 regulates Cutin biosynthesis in Arabidopsis thaliana. Plant Cell (2007) 1.88
Combinatorial modification of multiple lignin traits in trees through multigene cotransformation. Proc Natl Acad Sci U S A (2003) 1.83
The knotted1-like homeobox gene BREVIPEDICELLUS regulates cell differentiation by modulating metabolic pathways. Genes Dev (2003) 1.73
Comprehensive compositional analysis of plant cell walls (lignocellulosic biomass) part II: carbohydrates. J Vis Exp (2010) 1.68
Evolutionary tinkering with conserved components of a transcriptional regulatory network. PLoS Biol (2010) 1.67
The gene regulatory logic of transcription factor evolution. Trends Ecol Evol (2008) 1.64
Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway. Proc Natl Acad Sci U S A (2008) 1.60
Transcriptional regulation of lignin biosynthesis. Plant Signal Behav (2009) 1.58
Genomic basis for cell-wall diversity in plants. A comparative approach to gene families in rice and Arabidopsis. Plant Cell Physiol (2004) 1.42
The Sleipnir library for computational functional genomics. Bioinformatics (2008) 1.36
In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation. BMC Bioinformatics (2007) 1.32
Multi-site genetic modification of monolignol biosynthesis in alfalfa (Medicago sativa): effects on lignin composition in specific cell types. New Phytol (2008) 1.31
Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator. Plant Physiol (2010) 1.29
FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice. Plant Mol Biol (2008) 1.29
The DFRC Method for Lignin Analysis. 2. Monomers from Isolated Lignins. J Agric Food Chem (1998) 1.24
Plant genetic engineering to improve biomass characteristics for biofuels. Curr Opin Biotechnol (2006) 1.21
GAGA protein: a multi-faceted transcription factor. Biochem Cell Biol (2006) 1.18
Maize Brittle stalk2 encodes a COBRA-like protein expressed in early organ development but required for tissue flexibility at maturity. Plant Physiol (2007) 1.11
Structure of the cinnamyl-alcohol dehydrogenase gene family in rice and promoter activity of a member associated with lignification. Planta (2004) 1.04
The transcriptional activator Pti4 is required for the recruitment of a repressosome nucleated by repressor SEBF at the potato PR-10a gene. Plant Cell (2008) 0.99
Phenotypic plasticity in cell walls of maize brown midrib mutants is limited by lignin composition. J Exp Bot (2010) 0.98
Discovery of cis-elements between sorghum and rice using co-expression and evolutionary conservation. BMC Genomics (2009) 0.89
Transposon insertional mutagenesis in rice. Plant Physiol (2001) 0.86
Setting up reverse transcription quantitative-PCR experiments. Methods Mol Biol (2011) 0.78
The SHINE clade of AP2 domain transcription factors activates wax biosynthesis, alters cuticle properties, and confers drought tolerance when overexpressed in Arabidopsis. Plant Cell (2004) 2.90
Molecular and physiological analysis of drought stress in Arabidopsis reveals early responses leading to acclimation in plant growth. Plant Physiol (2010) 2.19
An ancient R gene from the wild potato species Solanum bulbocastanum confers broad-spectrum resistance to Phytophthora infestans in cultivated potato and tomato. Plant J (2003) 2.16
Rice mutant resources for gene discovery. Plant Mol Biol (2004) 1.99
The Rpi-blb2 gene from Solanum bulbocastanum is an Mi-1 gene homolog conferring broad-spectrum late blight resistance in potato. Plant J (2005) 1.92
Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene. Proc Natl Acad Sci U S A (2007) 1.65
Effects of drought on gene expression in maize reproductive and leaf meristem tissue revealed by RNA-Seq. Plant Physiol (2012) 1.58
Activation tagging using the En-I maize transposon system in Arabidopsis. Plant Physiol (2002) 1.57
ASYMMETRIC LEAVES2-LIKE1 gene, a member of the AS2/LOB family, controls proximal-distal patterning in Arabidopsis petals. Plant Mol Biol (2005) 1.30
Mutant resources in rice for functional genomics of the grasses. Plant Physiol (2009) 1.25
Cyclophilin 20-3 relays a 12-oxo-phytodienoic acid signal during stress responsive regulation of cellular redox homeostasis. Proc Natl Acad Sci U S A (2013) 1.17
EU-OSTID: a collection of transposon insertional mutants for functional genomics in rice. Plant Mol Biol (2005) 1.08
The Arabidopsis thaliana DNA-binding protein AHL19 mediates verticillium wilt resistance. Mol Plant Microbe Interact (2011) 0.95
Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies. Bioinformatics (2013) 0.95
Enhanced salt stress tolerance of rice plants expressing a vacuolar H+ -ATPase subunit c1 (SaVHAc1) gene from the halophyte grass Spartina alterniflora Löisel. Plant Biotechnol J (2012) 0.94
Molecular evaluation of genetic diversity and association studies in rice (Oryza sativa L.). J Genet (2012) 0.93
BOLITA, an Arabidopsis AP2/ERF-like transcription factor that affects cell expansion and proliferation/differentiation pathways. Plant Mol Biol (2006) 0.92
Integrative approaches for mining transcriptional regulatory programs in Arabidopsis. Brief Funct Genomic Proteomic (2008) 0.79
Activation tagging with En/Spm-I /dSpm transposons in Arabidopsis. Methods Mol Biol (2011) 0.79
Screening Arabidopsis genotypes for drought stress resistance. Methods Mol Biol (2011) 0.79
Setting up reverse transcription quantitative-PCR experiments. Methods Mol Biol (2011) 0.78
An active ac/ds transposon system for activation tagging in tomato cultivar m82 using clonal propagation. Plant Physiol (2013) 0.78
The NTT transcription factor promotes replum development in Arabidopsis fruits. Plant J (2014) 0.77
Suppression of an atypically spliced rice CACTA transposon transcript in transgenic plants. Genetics (2005) 0.77
Microarray data analysis. Methods Mol Biol (2011) 0.76
Reconciling differential gene expression data with molecular interaction networks. Bioinformatics (2013) 0.76
Phenotypic and physiological evaluation for drought and salinity stress responses in rice. Methods Mol Biol (2013) 0.75
Activation tagging using the maize En-I transposon system for the identification of abiotic stress resistance genes in Arabidopsis. Methods Mol Biol (2013) 0.75
Transposon based activation tagging in diploid strawberry and monoploid derivatives of potato. Plant Cell Rep (2014) 0.75