Published in PLoS One on August 08, 2007
Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins. Science (2009) 10.21
The developmental dynamics of the maize leaf transcriptome. Nat Genet (2010) 4.02
Nitrogen uptake, assimilation and remobilization in plants: challenges for sustainable and productive agriculture. Ann Bot (2010) 3.11
The genetic basis of flowering responses to seasonal cues. Nat Rev Genet (2012) 2.98
Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis. Proc Natl Acad Sci U S A (2009) 2.77
Expansion and diversification of the Populus R2R3-MYB family of transcription factors. Plant Physiol (2008) 2.05
Centering the Organizing Center in the Arabidopsis thaliana Shoot Apical Meristem by a Combination of Cytokinin Signaling and Self-Organization. PLoS One (2016) 2.01
PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update. Nucleic Acids Res (2009) 1.98
Abscisic Acid synthesis and response. Arabidopsis Book (2013) 1.75
Arabidopsis lateral organ boundaries negatively regulates brassinosteroid accumulation to limit growth in organ boundaries. Proc Natl Acad Sci U S A (2012) 1.72
The TOPLESS interactome: a framework for gene repression in Arabidopsis. Plant Physiol (2011) 1.71
The crucial role of plant mitochondria in orchestrating drought tolerance. Ann Bot (2008) 1.70
Arabidopsis PYR/PYL/RCAR receptors play a major role in quantitative regulation of stomatal aperture and transcriptional response to abscisic acid. Plant Cell (2012) 1.67
GIGANTEA directly activates Flowering Locus T in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2011) 1.66
Regulation of Arabidopsis brassinosteroid signaling by atypical basic helix-loop-helix proteins. Plant Cell (2009) 1.64
Simultaneous application of heat, drought, and virus to Arabidopsis plants reveals significant shifts in signaling networks. Plant Physiol (2013) 1.61
AtHMA3, a P1B-ATPase allowing Cd/Zn/Co/Pb vacuolar storage in Arabidopsis. Plant Physiol (2008) 1.59
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data. Plant Physiol (2010) 1.59
Comparative physiology of elemental distributions in plants. Ann Bot (2010) 1.58
ABA receptors: the START of a new paradigm in phytohormone signalling. J Exp Bot (2010) 1.56
Ion exchangers NHX1 and NHX2 mediate active potassium uptake into vacuoles to regulate cell turgor and stomatal function in Arabidopsis. Plant Cell (2012) 1.54
Nanoridges that characterize the surface morphology of flowers require the synthesis of cutin polyester. Proc Natl Acad Sci U S A (2009) 1.54
Elucidating the germination transcriptional program using small molecules. Plant Physiol (2008) 1.53
The AUXIN BINDING PROTEIN 1 is required for differential auxin responses mediating root growth. PLoS One (2009) 1.51
The divergence, actions, roles, and relatives of sodium-coupled bicarbonate transporters. Physiol Rev (2013) 1.50
ORS1, an H₂O₂-responsive NAC transcription factor, controls senescence in Arabidopsis thaliana. Mol Plant (2011) 1.50
Auxin regulates distal stem cell differentiation in Arabidopsis roots. Proc Natl Acad Sci U S A (2010) 1.48
The Arabidopsis acbp1acbp2 double mutant lacking acyl-CoA-binding proteins ACBP1 and ACBP2 is embryo lethal. New Phytol (2010) 1.48
The role of Mediator in small and long noncoding RNA production in Arabidopsis thaliana. EMBO J (2011) 1.48
Endodermal ABA signaling promotes lateral root quiescence during salt stress in Arabidopsis seedlings. Plant Cell (2013) 1.46
AtMetExpress development: a phytochemical atlas of Arabidopsis development. Plant Physiol (2009) 1.46
Five Arabidopsis reticulon isoforms share endoplasmic reticulum location, topology, and membrane-shaping properties. Plant Cell (2010) 1.46
Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process. Plant Physiol (2008) 1.45
Web-queryable large-scale data sets for hypothesis generation in plant biology. Plant Cell (2009) 1.44
Phosphate Import in Plants: Focus on the PHT1 Transporters. Front Plant Sci (2011) 1.44
Functional analysis of transcription factors in Arabidopsis. Plant Cell Physiol (2009) 1.42
Carotenoid biosynthesis in Arabidopsis: a colorful pathway. Arabidopsis Book (2012) 1.40
ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology. Plant Cell (2017) 1.39
A subset of cytokinin two-component signaling system plays a role in cold temperature stress response in Arabidopsis. J Biol Chem (2010) 1.35
Rate of meristem maturation determines inflorescence architecture in tomato. Proc Natl Acad Sci U S A (2011) 1.34
Genomics and bioinformatics resources for crop improvement. Plant Cell Physiol (2010) 1.33
The soybean stem growth habit gene Dt1 is an ortholog of Arabidopsis TERMINAL FLOWER1. Plant Physiol (2010) 1.31
A spatio-temporal understanding of growth regulation during the salt stress response in Arabidopsis. Plant Cell (2013) 1.31
The Arabidopsis multistress regulator TSPO is a heme binding membrane protein and a potential scavenger of porphyrins via an autophagy-dependent degradation mechanism. Plant Cell (2011) 1.31
SHORT HYPOCOTYL UNDER BLUE1 associates with MINISEED3 and HAIKU2 promoters in vivo to regulate Arabidopsis seed development. Plant Cell (2009) 1.31
The microRNA159-regulated GAMYB-like genes inhibit growth and promote programmed cell death in Arabidopsis. Plant Physiol (2010) 1.30
Genome-wide analysis reveals gene expression and metabolic network dynamics during embryo development in Arabidopsis. Plant Physiol (2011) 1.29
Cytochromes P450 CYP94C1 and CYP94B3 catalyze two successive oxidation steps of plant hormone Jasmonoyl-isoleucine for catabolic turnover. J Biol Chem (2012) 1.28
Advances in omics and bioinformatics tools for systems analyses of plant functions. Plant Cell Physiol (2011) 1.28
Arabidopsis small ubiquitin-like modifier paralogs have distinct functions in development and defense. Plant Cell (2010) 1.28
A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis. Plant Cell (2009) 1.27
Castor phospholipid:diacylglycerol acyltransferase facilitates efficient metabolism of hydroxy fatty acids in transgenic Arabidopsis. Plant Physiol (2010) 1.27
SUPPRESSOR OF MORE AXILLARY GROWTH2 1 controls seed germination and seedling development in Arabidopsis. Plant Physiol (2013) 1.25
Peroxisomal ATP import is essential for seedling development in Arabidopsis thaliana. Plant Cell (2008) 1.24
Araport: the Arabidopsis information portal. Nucleic Acids Res (2014) 1.23
The interconversion of UDP-arabinopyranose and UDP-arabinofuranose is indispensable for plant development in Arabidopsis. Plant Cell (2011) 1.23
Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination. Plant Physiol (2013) 1.23
Analysis of TETRAKETIDE α-PYRONE REDUCTASE function in Arabidopsis thaliana reveals a previously unknown, but conserved, biochemical pathway in sporopollenin monomer biosynthesis. Plant Cell (2010) 1.23
Seed storage oil mobilization is important but not essential for germination or seedling establishment in Arabidopsis. Plant Physiol (2011) 1.23
The MED12-MED13 module of Mediator regulates the timing of embryo patterning in Arabidopsis. Development (2010) 1.23
Coordinated activation of cellulose and repression of lignin biosynthesis pathways in rice. Plant Physiol (2010) 1.23
Plant NHX cation/proton antiporters. Plant Signal Behav (2009) 1.21
The Arabidopsis information resource: Making and mining the "gold standard" annotated reference plant genome. Genesis (2015) 1.20
A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves. Plant J (2013) 1.18
Genome-wide analysis of branched-chain amino acid levels in Arabidopsis seeds. Plant Cell (2013) 1.17
The plastidial glyceraldehyde-3-phosphate dehydrogenase is critical for viable pollen development in Arabidopsis. Plant Physiol (2010) 1.17
Metabolic engineering in Nicotiana benthamiana reveals key enzyme functions in Arabidopsis indole glucosinolate modification. Plant Cell (2011) 1.17
Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function". Front Plant Sci (2012) 1.17
ERF5 and ERF6 play redundant roles as positive regulators of JA/Et-mediated defense against Botrytis cinerea in Arabidopsis. PLoS One (2012) 1.16
Expansive evolution of the trehalose-6-phosphate phosphatase gene family in Arabidopsis. Plant Physiol (2012) 1.16
A guideline to family-wide comparative state-of-the-art quantitative RT-PCR analysis exemplified with a Brassicaceae cross-species seed germination case study. Plant Cell (2011) 1.15
Rho of plant GTPase signaling regulates the behavior of Arabidopsis kinesin-13A to establish secondary cell wall patterns. Plant Cell (2013) 1.15
The Arabidopsis D-type cyclin CYCD2;1 and the inhibitor ICK2/KRP2 modulate auxin-induced lateral root formation. Plant Cell (2011) 1.14
Selective inhibition of clade A phosphatases type 2C by PYR/PYL/RCAR abscisic acid receptors. Plant Physiol (2011) 1.14
Potent and selective activation of abscisic acid receptors in vivo by mutational stabilization of their agonist-bound conformation. Proc Natl Acad Sci U S A (2011) 1.14
Genome-Wide Association Mapping of Fertility Reduction upon Heat Stress Reveals Developmental Stage-Specific QTLs in Arabidopsis thaliana. Plant Cell (2015) 1.13
SOMBRERO, BEARSKIN1, and BEARSKIN2 regulate root cap maturation in Arabidopsis. Plant Cell (2010) 1.12
Unique and overlapping expression patterns among members of photosynthesis-associated nuclear gene families in Arabidopsis. Plant Physiol (2008) 1.12
Histidine kinase activity of the ethylene receptor ETR1 facilitates the ethylene response in Arabidopsis. Plant Physiol (2012) 1.12
The Fanconi anemia ortholog FANCM ensures ordered homologous recombination in both somatic and meiotic cells in Arabidopsis. Plant Cell (2012) 1.12
Functional analysis of the group 4 late embryogenesis abundant proteins reveals their relevance in the adaptive response during water deficit in Arabidopsis. Plant Physiol (2010) 1.10
Bax inhibitor-1: a highly conserved endoplasmic reticulum-resident cell death suppressor. Cell Death Differ (2011) 1.10
The Arabidopsis thaliana response regulator ARR22 is a putative AHP phospho-histidine phosphatase expressed in the chalaza of developing seeds. BMC Plant Biol (2008) 1.10
Two D-2-hydroxy-acid dehydrogenases in Arabidopsis thaliana with catalytic capacities to participate in the last reactions of the methylglyoxal and beta-oxidation pathways. J Biol Chem (2009) 1.10
Metabolic interactions between the Lands cycle and the Kennedy pathway of glycerolipid synthesis in Arabidopsis developing seeds. Plant Cell (2012) 1.10
MaizeGDB update: new tools, data and interface for the maize model organism database. Nucleic Acids Res (2015) 1.09
Abscisic acid represses growth of the Arabidopsis embryonic axis after germination by enhancing auxin signaling. Plant Cell (2009) 1.09
GNC and CGA1 modulate chlorophyll biosynthesis and glutamate synthase (GLU1/Fd-GOGAT) expression in Arabidopsis. PLoS One (2011) 1.09
The Arabidopsis floral homeotic proteins APETALA3 and PISTILLATA negatively regulate the BANQUO genes implicated in light signaling. Plant Cell (2010) 1.08
Arabidopsis ECERIFERUM2 is a component of the fatty acid elongation machinery required for fatty acid extension to exceptional lengths. Plant Physiol (2012) 1.08
Functional network construction in Arabidopsis using rule-based machine learning on large-scale data sets. Plant Cell (2011) 1.08
Detection of spatial-specific phytochrome responses using targeted expression of biliverdin reductase in Arabidopsis. Plant Physiol (2008) 1.08
Callose homeostasis at plasmodesmata: molecular regulators and developmental relevance. Front Plant Sci (2014) 1.07
The role of NAD biosynthesis in plant development and stress responses. Ann Bot (2009) 1.07
The phosphorylated pathway of serine biosynthesis is essential both for male gametophyte and embryo development and for root growth in Arabidopsis. Plant Cell (2013) 1.07
Functional characterization of a higher plant sphingolipid Delta4-desaturase: defining the role of sphingosine and sphingosine-1-phosphate in Arabidopsis. Plant Physiol (2008) 1.06
Taking the next step: building an Arabidopsis information portal. Plant Cell (2012) 1.06
Antagonistic regulation of growth and immunity by the Arabidopsis basic helix-loop-helix transcription factor homolog of brassinosteroid enhanced expression2 interacting with increased leaf inclination1 binding bHLH1. Plant Physiol (2014) 1.06
Functional characterization of the GATA transcription factors GNC and CGA1 reveals their key role in chloroplast development, growth, and division in Arabidopsis. Plant Physiol (2012) 1.06
Transcriptome analysis by GeneTrail revealed regulation of functional categories in response to alterations of iron homeostasis in Arabidopsis thaliana. BMC Plant Biol (2011) 1.06
Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics (2003) 100.88
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res (2002) 76.95
GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol (2004) 19.29
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res (2003) 18.69
A gene expression map of Arabidopsis thaliana development. Nat Genet (2005) 17.39
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J (2004) 15.51
A gene expression map of the Arabidopsis root. Science (2003) 9.95
The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J (2007) 8.09
The Stanford Microarray Database. Nucleic Acids Res (2001) 7.77
AraCyc: a biochemical pathway database for Arabidopsis. Plant Physiol (2003) 7.59
The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses. Plant J (2005) 6.07
NASCArrays: a repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res (2004) 5.82
Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression. Plant J (1998) 5.70
The functional landscape of mouse gene expression. J Biol (2004) 5.65
Transcriptome analysis of haploid male gametophyte development in Arabidopsis. Genome Biol (2004) 4.83
TAIR: a resource for integrated Arabidopsis data. Funct Integr Genomics (2002) 3.74
SUBA: the Arabidopsis Subcellular Database. Nucleic Acids Res (2006) 3.63
Gibberellin regulates Arabidopsis seed germination via RGL2, a GAI/RGA-like gene whose expression is up-regulated following imbibition. Genes Dev (2002) 3.46
Phosphate transport in Arabidopsis: Pht1;1 and Pht1;4 play a major role in phosphate acquisition from both low- and high-phosphate environments. Plant J (2004) 3.28
Floral homeotic genes are targets of gibberellin signaling in flower development. Proc Natl Acad Sci U S A (2004) 1.99
Laser capture microdissection for the analysis of gene expression during embryogenesis of Arabidopsis. Plant J (2005) 1.85
ArrayExpress: a public database of gene expression data at EBI. C R Biol (2004) 1.78
Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins. Science (2009) 10.21
The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses. Plant J (2005) 6.07
Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. Plant Cell (2002) 4.58
Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell Environ (2009) 2.76
A predicted interactome for Arabidopsis. Plant Physiol (2007) 2.41
Next-generation mapping of Arabidopsis genes. Plant J (2011) 2.39
Expansion and diversification of the Populus R2R3-MYB family of transcription factors. Plant Physiol (2008) 2.05
Elucidating the germination transcriptional program using small molecules. Plant Physiol (2008) 1.53
Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions. Proc Natl Acad Sci U S A (2011) 1.49
AtMetExpress development: a phytochemical atlas of Arabidopsis development. Plant Physiol (2009) 1.46
Web-queryable large-scale data sets for hypothesis generation in plant biology. Plant Cell (2009) 1.44
The effects of intrathecal morphine on patients undergoing minimally invasive direct coronary artery bypass surgery. J Cardiothorac Vasc Anesth (2005) 1.40
Genotype and time of day shape the Populus drought response. Plant J (2009) 1.28
An extensive (co-)expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana. BMC Plant Biol (2008) 1.20
BAR expressolog identification: expression profile similarity ranking of homologous genes in plant species. Plant J (2012) 1.20
A survey of yeast genomic assays for drug and target discovery. Pharmacol Ther (2010) 1.18
ePlant and the 3D data display initiative: integrative systems biology on the world wide web. PLoS One (2011) 1.16
A comprehensive platform for highly multiplexed mammalian functional genetic screens. BMC Genomics (2011) 1.12
Identification of innate immunity elicitors using molecular signatures of natural selection. Proc Natl Acad Sci U S A (2012) 1.08
Analysis of gene expression patterns during seed coat development in Arabidopsis. Mol Plant (2011) 1.08
The re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds and its associated transcriptome. PLoS One (2011) 1.03
A comprehensive expression analysis of the Arabidopsis proline-rich extensin-like receptor kinase gene family using bioinformatic and experimental approaches. Plant Cell Physiol (2004) 0.99
MetaBase--the wiki-database of biological databases. Nucleic Acids Res (2011) 0.98
The embryonic leaf identity gene FUSCA3 regulates vegetative phase transitions by negatively modulating ethylene-regulated gene expression in Arabidopsis. BMC Biol (2012) 0.98
Genetic and genomic architecture of the evolution of resistance to antifungal drug combinations. PLoS Genet (2013) 0.97
Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements. BMC Bioinformatics (2007) 0.97
Quantitative Interactor Screening with next-generation Sequencing (QIS-Seq) identifies Arabidopsis thaliana MLO2 as a target of the Pseudomonas syringae type III effector HopZ2. BMC Genomics (2012) 0.94
BlastDigester--a web-based program for efficient CAPS marker design. Trends Genet (2004) 0.94
Forward and reverse genetics to identify genes involved in the age-related resistance response in Arabidopsis thaliana. Mol Plant Pathol (2009) 0.92
Developmental transcriptional profiling reveals key insights into Triticeae reproductive development. Plant J (2013) 0.90
Changes in stomatal function and water use efficiency in potato plants with altered sucrolytic activity. Plant Cell Environ (2011) 0.86
CapsID: a web-based tool for developing parsimonious sets of CAPS molecular markers for genotyping. BMC Genet (2006) 0.85
The role of the Arabidopsis FUSCA3 transcription factor during inhibition of seed germination at high temperature. BMC Plant Biol (2012) 0.85
A predicted protein interactome for rice. Rice (N Y) (2012) 0.82
Gene expression analyses for elucidating mechanisms of hormonal action in plants. Methods Mol Biol (2009) 0.81
RNA-Seq effectively monitors gene expression in Eutrema salsugineum plants growing in an extreme natural habitat and in controlled growth cabinet conditions. BMC Genomics (2013) 0.80
C-terminal motif prediction in eukaryotic proteomes using comparative genomics and statistical over-representation across protein families. BMC Genomics (2007) 0.80
A comparative genomic analysis of ESTs from Ustilago maydis. Funct Integr Genomics (2004) 0.80
PhyloPro: a web-based tool for the generation and visualization of phylogenetic profiles across Eukarya. Bioinformatics (2011) 0.80
Seed bioinformatics. Methods Mol Biol (2011) 0.78
Bioinformatic tools in Arabidopsis research. Methods Mol Biol (2014) 0.77
The effect of acute autologous blood transfusion on coagulation dysfunction after cardiopulmonary bypass. Eur J Anaesthesiol (2009) 0.75