Published in Nucleic Acids Res on January 25, 2011
Mechanism of eukaryotic RNA polymerase III transcription termination. Science (2013) 1.61
RNA polymerase backtracking in gene regulation and genome instability. Cell (2012) 1.48
Factor-independent transcription pausing caused by recognition of the RNA-DNA hybrid sequence. EMBO J (2011) 1.18
Tagetitoxin inhibits RNA polymerase through trapping of the trigger loop. J Biol Chem (2011) 1.14
Direct assessment of transcription fidelity by high-resolution RNA sequencing. Nucleic Acids Res (2013) 1.03
Tagetitoxin inhibits transcription by stabilizing pre-translocated state of the elongation complex. Nucleic Acids Res (2013) 1.00
Basic mechanisms of RNA polymerase II activity and alteration of gene expression in Saccharomyces cerevisiae. Biochim Biophys Acta (2012) 0.98
Transcription initiation factor DksA has diverse effects on RNA chain elongation. Nucleic Acids Res (2011) 0.98
Energetic and structural details of the trigger-loop closing transition in RNA polymerase II. Biophys J (2013) 0.95
Bacterial global regulators DksA/ppGpp increase fidelity of transcription. Nucleic Acids Res (2015) 0.92
In vitro experimental system for analysis of transcription-translation coupling. Nucleic Acids Res (2011) 0.91
The RNA polymerase trigger loop functions in all three phases of the transcription cycle. Nucleic Acids Res (2013) 0.90
Control of transcription elongation by GreA determines rate of gene expression in Streptococcus pneumoniae. Nucleic Acids Res (2014) 0.88
Interplay between the trigger loop and the F loop during RNA polymerase catalysis. Nucleic Acids Res (2013) 0.85
Activation and reactivation of the RNA polymerase II trigger loop for intrinsic RNA cleavage and catalysis. Transcription (2014) 0.84
New Insights into the Functions of Transcription Factors that Bind the RNA Polymerase Secondary Channel. Biomolecules (2015) 0.83
Multiple active centers of multi-subunit RNA polymerases. Transcription (2012) 0.82
DksA involvement in transcription fidelity buffers stochastic epigenetic change. Nucleic Acids Res (2015) 0.81
Lineage-specific variations in the trigger loop modulate RNA proofreading by bacterial RNA polymerases. Nucleic Acids Res (2016) 0.78
Inhibition of Mycobacterium tuberculosis RNA polymerase by binding of a Gre factor homolog to the secondary channel. J Bacteriol (2011) 0.78
RNA Polymerase II Trigger Loop Mobility: INDIRECT EFFECTS OF Rpb9. J Biol Chem (2016) 0.76
Bacteriophage Xp10 anti-termination factor p7 induces forward translocation by host RNA polymerase. Nucleic Acids Res (2015) 0.76
pH dependence of the stress regulator DksA. PLoS One (2015) 0.76
Regulation of transcriptional pausing through the secondary channel of RNA polymerase. Proc Natl Acad Sci U S A (2016) 0.75
Dynamics of GreB-RNA polymerase interaction allow a proofreading accessory protein to patrol for transcription complexes needing rescue. Proc Natl Acad Sci U S A (2017) 0.75
Conserved functions of the trigger loop and Gre factors in RNA cleavage by bacterial RNA polymerases. J Biol Chem (2017) 0.75
DNA replication fidelity. Annu Rev Biochem (2000) 7.29
Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis. Cell (2006) 4.49
Structural basis for substrate loading in bacterial RNA polymerase. Nature (2007) 4.40
Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. Mol Cell (2004) 4.20
A mechanism for all polymerases. Nature (1998) 3.79
Transcript cleavage factors from E. coli. Cell (1993) 3.78
Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase. Cell (2003) 3.14
Transcript-assisted transcriptional proofreading. Science (2006) 2.88
Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution. Science (2009) 2.68
The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin. Mol Cell (2008) 2.62
Structural basis of transcription inhibition by alpha-amanitin and implications for RNA polymerase II translocation. Nat Struct Mol Biol (2008) 2.47
Intrinsic transcript cleavage activity of RNA polymerase. Proc Natl Acad Sci U S A (1995) 2.45
Structural basis of transcription inhibition by antibiotic streptolydigin. Mol Cell (2005) 2.40
Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase. EMBO J (2003) 2.32
Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation. Mol Cell (2008) 2.21
Conserved arginine residues implicated in ATP hydrolysis, nucleotide-sensing, and inter-subunit interactions in AAA and AAA+ ATPases. J Struct Biol (2004) 2.15
Nucleic acid polymerases use a general acid for nucleotidyl transfer. Nat Struct Mol Biol (2009) 2.13
Unified two-metal mechanism of RNA synthesis and degradation by RNA polymerase. EMBO J (2003) 2.10
Mechanism of sequence-specific pausing of bacterial RNA polymerase. Proc Natl Acad Sci U S A (2009) 1.92
Mapping of catalytic residues in the RNA polymerase active center. Science (1996) 1.91
Donation of catalytic residues to RNA polymerase active center by transcription factor Gre. Proc Natl Acad Sci U S A (2003) 1.88
Role of the RNA polymerase trigger loop in catalysis and pausing. Nat Struct Mol Biol (2009) 1.86
Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs. J Biol Chem (2006) 1.71
Structural basis for transcription inhibition by tagetitoxin. Nat Struct Mol Biol (2005) 1.64
Stepwise mechanism for transcription fidelity. BMC Biol (2010) 1.58
Evidence that transcript cleavage is essential for RNA polymerase II transcription and cell viability. Mol Cell (2010) 1.55
pH-dependent conformational switch activates the inhibitor of transcription elongation. EMBO J (2006) 1.43
Regulation through the RNA polymerase secondary channel. Structural and functional variability of the coiled-coil transcription factors. J Biol Chem (2005) 1.29
Central role of the RNA polymerase trigger loop in intrinsic RNA hydrolysis. Proc Natl Acad Sci U S A (2010) 1.29
Biochemical assays of Gre factors of Thermus thermophilus. Methods Enzymol (2003) 1.22
Allosteric control of catalysis by the F loop of RNA polymerase. Proc Natl Acad Sci U S A (2009) 1.20
The involvement of the aspartate triad of the active center in all catalytic activities of multisubunit RNA polymerase. Nucleic Acids Res (2005) 1.19
The carboxy-terminal coiled-coil of the RNA polymerase beta'-subunit is the main binding site for Gre factors. EMBO Rep (2007) 1.13
Preparation and characterization of recombinant Thermus aquaticus RNA polymerase. Methods Enzymol (2003) 1.10
Transcript-assisted transcriptional proofreading. Science (2006) 2.88
Structural basis of transcription inhibition by antibiotic streptolydigin. Mol Cell (2005) 2.40
Structural, functional, and genetic analysis of sorangicin inhibition of bacterial RNA polymerase. EMBO J (2005) 1.71
Mechanism of eukaryotic RNA polymerase III transcription termination. Science (2013) 1.61
Stepwise mechanism for transcription fidelity. BMC Biol (2010) 1.58
Molecular mechanism of transcription inhibition by peptide antibiotic Microcin J25. Mol Cell (2004) 1.49
Molecular mechanism of bacterial persistence by HipA. Mol Cell (2013) 1.48
The sigma 70 subunit of RNA polymerase induces lacUV5 promoter-proximal pausing of transcription. Nat Struct Mol Biol (2004) 1.41
Central role of the RNA polymerase trigger loop in intrinsic RNA hydrolysis. Proc Natl Acad Sci U S A (2010) 1.29
Factor-independent transcription pausing caused by recognition of the RNA-DNA hybrid sequence. EMBO J (2011) 1.18
Tagetitoxin inhibits transcription by stabilizing pre-translocated state of the elongation complex. Nucleic Acids Res (2013) 1.00
A novel bacteriophage-encoded RNA polymerase binding protein inhibits transcription initiation and abolishes transcription termination by host RNA polymerase. J Mol Biol (2002) 0.99
Remodeling of the sigma70 subunit non-template DNA strand contacts during the final step of transcription initiation. J Mol Biol (2005) 0.99
Regulated communication between the upstream face of RNA polymerase and the beta' subunit jaw domain. EMBO J (2004) 0.96
Mapping of RNA polymerase residues that interact with bacteriophage Xp10 transcription antitermination factor p7. J Mol Biol (2007) 0.95
Structure-activity analysis of microcinJ25: distinct parts of the threaded lasso molecule are responsible for interaction with bacterial RNA polymerase. J Bacteriol (2005) 0.94
Bacterial global regulators DksA/ppGpp increase fidelity of transcription. Nucleic Acids Res (2015) 0.92
In vitro experimental system for analysis of transcription-translation coupling. Nucleic Acids Res (2011) 0.91
A new Bacillus cereus DNA-binding protein, HlyIIR, negatively regulates expression of B. cereus haemolysin II. Microbiology (2004) 0.91
A new basal promoter element recognized by RNA polymerase core enzyme. EMBO J (2011) 0.90
Transcript assisted phosphodiester bond hydrolysis by eukaryotic RNA polymerase II. Transcription (2014) 0.86
Optimized delivery of fluorescently labeled proteins in live bacteria using electroporation. Histochem Cell Biol (2014) 0.86
Multiple active centers of multi-subunit RNA polymerases. Transcription (2012) 0.82
The σ70 region 1.2 regulates promoter escape by unwinding DNA downstream of the transcription start site. Nucleic Acids Res (2013) 0.78
Methods for the assembly and analysis of in vitro transcription-coupled-to-translation systems. Methods Mol Biol (2015) 0.76
Antibiotic streptolydigin requires noncatalytic Mg2+ for binding to RNA polymerase. Antimicrob Agents Chemother (2013) 0.75
Structural Reassignment and Absolute Stereochemistry of Madurastatin C1 (MBJ-0034) and the Related Aziridine Siderophores: Madurastatins A1, B1, and MBJ-0035. J Nat Prod (2017) 0.75