Published in Stand Genomic Sci on December 25, 2010
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Farm management, not soil microbial diversity, controls nutrient loss from smallholder tropical agriculture. Front Microbiol (2015) 0.77
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Giardia alters commensal microbial diversity throughout the murine gut. Infect Immun (2017) 0.77
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From Vineyard Soil to Wine Fermentation: Microbiome Approximations to Explain the "terroir" Concept. Front Microbiol (2017) 0.76
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Methane Emission in a Specific Riparian-Zone Sediment Decreased with Bioelectrochemical Manipulation and Corresponded to the Microbial Community Dynamics. Front Microbiol (2016) 0.75
The first special issue of Standards in Genomic Sciences from the Genomic Standards Consortium. Stand Genomic Sci (2010) 0.75
Short chain fatty acids ameliorate immune-mediated uveitis partially by altering migration of lymphocytes from the intestine. Sci Rep (2017) 0.75
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The RAST Server: rapid annotations using subsystems technology. BMC Genomics (2008) 175.18
QIIME allows analysis of high-throughput community sequencing data. Nat Methods (2010) 85.34
A core gut microbiome in obese and lean twins. Nature (2008) 52.30
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Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods (2008) 32.71
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Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci U S A (2010) 19.48
Human gut microbiome viewed across age and geography. Nature (2012) 19.31
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Linking long-term dietary patterns with gut microbial enterotypes. Science (2011) 17.30
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The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med (2009) 16.02
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A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature (2009) 15.06
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J (2011) 13.64
The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc Natl Acad Sci U S A (2008) 12.99
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol (2008) 12.96
Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5. Science (2010) 12.54
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol (2009) 12.34
Worlds within worlds: evolution of the vertebrate gut microbiota. Nat Rev Microbiol (2008) 12.16
Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Appl Environ Microbiol (2007) 11.88
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci U S A (2010) 11.21
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation. Nucleic Acids Res (2006) 11.15
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol (2013) 11.05
Functional metagenomic profiling of nine biomes. Nature (2008) 11.00
Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J (2009) 9.71
Succession of microbial consortia in the developing infant gut microbiome. Proc Natl Acad Sci U S A (2010) 9.57
The BioPAX community standard for pathway data sharing. Nat Biotechnol (2010) 9.19
Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions. Nat Methods (2010) 9.18
Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Res (2007) 9.15
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Res (2008) 9.09
Diversity, stability and resilience of the human gut microbiota. Nature (2012) 9.09
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science (2011) 8.88
Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science (2013) 8.81
Annotation of bacterial and archaeal genomes: improving accuracy and consistency. Chem Rev (2007) 8.23
A catalog of reference genomes from the human microbiome. Science (2010) 8.10
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
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Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proc Natl Acad Sci U S A (2010) 7.09
The antibacterial lectin RegIIIgamma promotes the spatial segregation of microbiota and host in the intestine. Science (2011) 7.07
Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis. Nature (2003) 7.05
Gut microbiomes of Malawian twin pairs discordant for kwashiorkor. Science (2013) 6.98
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Identifying genetic determinants needed to establish a human gut symbiont in its habitat. Cell Host Microbe (2009) 6.67
Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics (2013) 6.62
UniFrac: an effective distance metric for microbial community comparison. ISME J (2010) 6.43
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genomic Sci (2010) 6.39
The impact of the gut microbiota on human health: an integrative view. Cell (2012) 6.01
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level. Bioinformatics (2010) 5.60
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Host remodeling of the gut microbiome and metabolic changes during pregnancy. Cell (2012) 4.86
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Defining seasonal marine microbial community dynamics. ISME J (2011) 4.61
Unravelling the effects of the environment and host genotype on the gut microbiome. Nat Rev Microbiol (2011) 4.57