Published in Proc IEEE Int Symp Biomed Imaging on June 21, 2010
Morphology-guided graph search for untangling objects: C. elegans analysis. Med Image Comput Comput Assist Interv (2010) 2.56
An image analysis toolbox for high-throughput C. elegans assays. Nat Methods (2012) 1.48
P-TRAP: a Panicle TRAit Phenotyping tool. BMC Plant Biol (2013) 1.04
High- and low-throughput scoring of fat mass and body fat distribution in C. elegans. Methods (2014) 0.86
Region-based progressive localization of cell nuclei in microscopic images with data adaptive modeling. BMC Bioinformatics (2013) 0.83
EXTRACTING BIOMEDICALLY IMPORTANT INFORMATION FROM LARGE, AUTOMATED IMAGING EXPERIMENTS. Proc IEEE Int Symp Biomed Imaging (2011) 0.75
CellProfiler: image analysis software for identifying and quantifying cell phenotypes. Genome Biol (2006) 32.51
A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen. Cell (2006) 18.81
CellProfiler: free, versatile software for automated biological image analysis. Biotechniques (2007) 14.71
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software. Bioinformatics (2011) 12.98
MAP kinase signalling cascade in Arabidopsis innate immunity. Nature (2002) 11.40
An ordered, nonredundant library of Pseudomonas aeruginosa strain PA14 transposon insertion mutants. Proc Natl Acad Sci U S A (2006) 7.62
Pseudomonas biofilm formation and antibiotic resistance are linked to phenotypic variation. Nature (2002) 7.08
A generative model for image segmentation based on label fusion. IEEE Trans Med Imaging (2010) 6.28
A conserved p38 MAP kinase pathway in Caenorhabditis elegans innate immunity. Science (2002) 5.97
Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning. Proc Natl Acad Sci U S A (2009) 5.15
In germ cells of mouse embryonic ovaries, the decision to enter meiosis precedes premeiotic DNA replication. Nat Genet (2006) 5.14
Long-lived C. elegans daf-2 mutants are resistant to bacterial pathogens. Science (2003) 4.91
mTOR complex 1 regulates lipin 1 localization to control the SREBP pathway. Cell (2011) 4.70
p38 MAPK regulates expression of immune response genes and contributes to longevity in C. elegans. PLoS Genet (2006) 4.47
Analysis of Pseudomonas aeruginosa diguanylate cyclases and phosphodiesterases reveals a role for bis-(3'-5')-cyclic-GMP in virulence. Proc Natl Acad Sci U S A (2006) 4.33
Glucosinolate metabolites required for an Arabidopsis innate immune response. Science (2008) 4.21
Long-range directional movement of an interphase chromosome site. Curr Biol (2006) 3.96
Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial. Genome Biol (2006) 3.75
Visualization of image data from cells to organisms. Nat Methods (2010) 3.66
The Spemann organizer gene, Goosecoid, promotes tumor metastasis. Proc Natl Acad Sci U S A (2006) 3.64
The worm has turned--microbial virulence modeled in Caenorhabditis elegans. Trends Microbiol (2005) 3.34
Galleria mellonella as a model system to study Cryptococcus neoformans pathogenesis. Infect Immun (2005) 3.13
CellProfiler Analyst: data exploration and analysis software for complex image-based screens. BMC Bioinformatics (2008) 2.99
Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins. Nat Methods (2006) 2.94
Biological imaging software tools. Nat Methods (2012) 2.91
Spherical demons: fast diffeomorphic landmark-free surface registration. IEEE Trans Med Imaging (2009) 2.74
RNAi living-cell microarrays for loss-of-function screens in Drosophila melanogaster cells. Nat Methods (2004) 2.72
Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis. Proc Natl Acad Sci U S A (2003) 2.71
Use of the Galleria mellonella caterpillar as a model host to study the role of the type III secretion system in Pseudomonas aeruginosa pathogenesis. Infect Immun (2003) 2.70
Automated segmentation of hippocampal subfields from ultra-high resolution in vivo MRI. Hippocampus (2009) 2.66
Caenorhabditis elegans as a model host for Staphylococcus aureus pathogenesis. Infect Immun (2003) 2.59
Arabidopsis local resistance to Botrytis cinerea involves salicylic acid and camalexin and requires EDS4 and PAD2, but not SID2, EDS5 or PAD4. Plant J (2003) 2.56
BifA, a cyclic-Di-GMP phosphodiesterase, inversely regulates biofilm formation and swarming motility by Pseudomonas aeruginosa PA14. J Bacteriol (2007) 2.49
The bromodomain protein Brd4 insulates chromatin from DNA damage signalling. Nature (2013) 2.46
Evolution of host innate defence: insights from Caenorhabditis elegans and primitive invertebrates. Nat Rev Immunol (2010) 2.45
Killing of Caenorhabditis elegans by Cryptococcus neoformans as a model of yeast pathogenesis. Proc Natl Acad Sci U S A (2002) 2.29
Innate immune responses activated in Arabidopsis roots by microbe-associated molecular patterns. Plant Cell (2010) 2.28
Effects of registration regularization and atlas sharpness on segmentation accuracy. Med Image Anal (2008) 2.24
Requirement for a conserved Toll/interleukin-1 resistance domain protein in the Caenorhabditis elegans immune response. Proc Natl Acad Sci U S A (2004) 2.23
Image-driven population analysis through mixture modeling. IEEE Trans Med Imaging (2009) 2.23
The microRNA miR-1 regulates a MEF-2-dependent retrograde signal at neuromuscular junctions. Cell (2008) 2.19
Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance. Plant J (2006) 2.18
Microarrays of lentiviruses for gene function screens in immortalized and primary cells. Nat Methods (2006) 2.18
Microsporidia are natural intracellular parasites of the nematode Caenorhabditis elegans. PLoS Biol (2008) 2.14
Cortical surface shape analysis based on spherical wavelets. IEEE Trans Med Imaging (2007) 2.11
Resistance to Botrytis cinerea induced in Arabidopsis by elicitors is independent of salicylic acid, ethylene, or jasmonate signaling but requires PHYTOALEXIN DEFICIENT3. Plant Physiol (2007) 2.10
The apoplastic oxidative burst peroxidase in Arabidopsis is a major component of pattern-triggered immunity. Plant Cell (2012) 2.09
Genetic architecture of Hsp90-dependent drug resistance. Eukaryot Cell (2006) 2.09
Activation of defense response pathways by OGs and Flg22 elicitors in Arabidopsis seedlings. Mol Plant (2008) 2.06
Antifungal chemical compounds identified using a C. elegans pathogenicity assay. PLoS Pathog (2007) 2.05
Pseudomonas syringae manipulates systemic plant defenses against pathogens and herbivores. Proc Natl Acad Sci U S A (2005) 2.00
An algorithm-based topographical biomaterials library to instruct cell fate. Proc Natl Acad Sci U S A (2011) 1.99
Integration of Caenorhabditis elegans MAPK pathways mediating immunity and stress resistance by MEK-1 MAPK kinase and VHP-1 MAPK phosphatase. Proc Natl Acad Sci U S A (2004) 1.99
High-throughput screen for novel antimicrobials using a whole animal infection model. ACS Chem Biol (2009) 1.99
Identification of novel antimicrobials using a live-animal infection model. Proc Natl Acad Sci U S A (2006) 1.98
Human tumors instigate granulin-expressing hematopoietic cells that promote malignancy by activating stromal fibroblasts in mice. J Clin Invest (2011) 1.96
Virulence effect of Enterococcus faecalis protease genes and the quorum-sensing locus fsr in Caenorhabditis elegans and mice. Infect Immun (2002) 1.96
A microscale human liver platform that supports the hepatic stages of Plasmodium falciparum and vivax. Cell Host Microbe (2013) 1.95
Caenorhabditis elegans innate immune response triggered by Salmonella enterica requires intact LPS and is mediated by a MAPK signaling pathway. Curr Biol (2003) 1.94
The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). IEEE Trans Med Imaging (2014) 1.91
A high-throughput, near-saturating screen for type III effector genes from Pseudomonas syringae. Proc Natl Acad Sci U S A (2005) 1.90
Distinct pathogenesis and host responses during infection of C. elegans by P. aeruginosa and S. aureus. PLoS Pathog (2010) 1.90
Evolutionary perspectives on innate immunity from the study of Caenorhabditis elegans. Curr Opin Immunol (2005) 1.89
The Caenorhabditis elegans MAPK phosphatase VHP-1 mediates a novel JNK-like signaling pathway in stress response. EMBO J (2004) 1.76
Caenorhabditis elegans as a host for the study of host-pathogen interactions. Curr Opin Microbiol (2002) 1.75
Models of Caenorhabditis elegans infection by bacterial and fungal pathogens. Methods Mol Biol (2008) 1.74
Host translational inhibition by Pseudomonas aeruginosa Exotoxin A Triggers an immune response in Caenorhabditis elegans. Cell Host Microbe (2012) 1.73
Caenorhabditis elegans-based screen identifies Salmonella virulence factors required for conserved host-pathogen interactions. Curr Biol (2004) 1.71
VPEgamma exhibits a caspase-like activity that contributes to defense against pathogens. Curr Biol (2004) 1.70
Strains of Escherichia coli O157:H7 differ primarily by insertions or deletions, not single-nucleotide polymorphisms. J Bacteriol (2002) 1.68
Data-driven clustering reveals a fundamental subdivision of the human cortex into two global systems. Neuropsychologia (2007) 1.68
Construction of an Enterococcus faecalis Tn917-mediated-gene-disruption library offers insight into Tn917 insertion patterns. J Bacteriol (2004) 1.65
In vivo HP1 targeting causes large-scale chromatin condensation and enhanced histone lysine methylation. Mol Cell Biol (2005) 1.60
Retracted Mediation of pathogen resistance by exudation of antimicrobials from roots. Nature (2005) 1.59
DT-REFinD: diffusion tensor registration with exact finite-strain differential. IEEE Trans Med Imaging (2009) 1.59
Staphylococcal biofilm exopolysaccharide protects against Caenorhabditis elegans immune defenses. PLoS Pathog (2007) 1.58
Identification of virulence genes in a pathogenic strain of Pseudomonas aeruginosa by representational difference analysis. J Bacteriol (2002) 1.58
The G protein-coupled receptor FSHR-1 is required for the Caenorhabditis elegans innate immune response. Proc Natl Acad Sci U S A (2009) 1.58
The AtrbohD-mediated oxidative burst elicited by oligogalacturonides in Arabidopsis is dispensable for the activation of defense responses effective against Botrytis cinerea. Plant Physiol (2008) 1.57
Free-Form B-spline Deformation Model for Groupwise Registration. Med Image Comput Comput Assist Interv (2007) 1.57
RESISTANCE TO FUSARIUM OXYSPORUM 1, a dominant Arabidopsis disease-resistance gene, is not race specific. Genetics (2005) 1.56
Cell microarrays and RNA interference chip away at gene function. Nat Genet (2005) 1.56
Exploiting amoeboid and non-vertebrate animal model systems to study the virulence of human pathogenic fungi. PLoS Pathog (2007) 1.55
bZIP transcription factor zip-2 mediates an early response to Pseudomonas aeruginosa infection in Caenorhabditis elegans. Proc Natl Acad Sci U S A (2010) 1.55
Annotated high-throughput microscopy image sets for validation. Nat Methods (2012) 1.53
Identification of small molecules for human hepatocyte expansion and iPS differentiation. Nat Chem Biol (2013) 1.49
An image analysis toolbox for high-throughput C. elegans assays. Nat Methods (2012) 1.48
Prospects for plant-derived antibacterials. Nat Biotechnol (2006) 1.48
Tandemly duplicated Arabidopsis genes that encode polygalacturonase-inhibiting proteins are regulated coordinately by different signal transduction pathways in response to fungal infection. Plant Cell (2003) 1.46