Published in Plant Cell on April 12, 2011
Transcriptome responses to combinations of stresses in Arabidopsis. Plant Physiol (2013) 1.53
The SWI2/SNF2 chromatin remodeling ATPase BRAHMA represses abscisic acid responses in the absence of the stress stimulus in Arabidopsis. Plant Cell (2012) 1.07
STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice. Plant Cell Physiol (2013) 1.04
Machine learning-based differential network analysis: a study of stress-responsive transcriptomes in Arabidopsis. Plant Cell (2014) 0.92
Role of chromatin in water stress responses in plants. J Exp Bot (2013) 0.89
Current challenges and future potential of tomato breeding using omics approaches. Breed Sci (2013) 0.83
Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell (2014) 0.81
De Novo Assembled Wheat Transcriptomes Delineate Differentially Expressed Host Genes in Response to Leaf Rust Infection. PLoS One (2016) 0.80
Pathogen associated molecular pattern (PAMP)-triggered immunity is compromised under C-limited growth. Mol Cells (2014) 0.79
Redox proteomics of tomato in response to Pseudomonas syringae infection. Hortic Res (2015) 0.78
Biofortification of rice with the essential amino acid lysine: molecular characterization, nutritional evaluation, and field performance. J Exp Bot (2016) 0.78
A friend in need is a friend indeed: understanding stress-associated transcriptional networks of plant metabolism using cliques of coordinately expressed genes. Plant Signal Behav (2011) 0.76
Evolutionary history exposes radical diversification among classes of interaction partners of the MLLE domain of plant poly(A)-binding proteins. BMC Evol Biol (2015) 0.75
Identification of Biomarkers for Defense Response to Plasmopara viticola in a Resistant Grape Variety. Front Plant Sci (2017) 0.75
Neofusicoccum parvum Colonization of the Grapevine Woody Stem Triggers Asynchronous Host Responses at the Site of Infection and in the Leaves. Front Plant Sci (2017) 0.75
Metabolome Dynamics of Smutted Sugarcane Reveals Mechanisms Involved in Disease Progression and Whip Emission. Front Plant Sci (2017) 0.75
Large-scale transcriptome analysis reveals arabidopsis metabolic pathways are frequently influenced by different pathogens. Plant Mol Biol (2017) 0.75
Multi-modal volume registration by maximization of mutual information. Med Image Anal (1996) 8.75
Abscisic acid: emergence of a core signaling network. Annu Rev Plant Biol (2010) 6.99
NASCArrays: a repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res (2004) 5.82
A central integrator of transcription networks in plant stress and energy signalling. Nature (2007) 5.05
PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics (2006) 3.34
Tetrapyrrole biosynthesis in higher plants. Annu Rev Plant Biol (2007) 2.97
Starch as a major integrator in the regulation of plant growth. Proc Natl Acad Sci U S A (2009) 2.47
Convergent energy and stress signaling. Trends Plant Sci (2008) 2.44
Identification of the 2-hydroxyglutarate and isovaleryl-CoA dehydrogenases as alternative electron donors linking lysine catabolism to the electron transport chain of Arabidopsis mitochondria. Plant Cell (2010) 1.63
Seed desiccation: a bridge between maturation and germination. Trends Plant Sci (2010) 1.43
The interface between metabolic and stress signalling. Ann Bot (2009) 1.32
Regulation of lysine catabolism in higher plants. Trends Plant Sci (2000) 1.25
A seed high-lysine trait is negatively associated with the TCA cycle and slows down Arabidopsis seed germination. New Phytol (2010) 1.16
Metabolic control exerted by the 2-oxoglutarate dehydrogenase reaction: a cross-kingdom comparison of the crossroad between energy production and nitrogen assimilation. Biochem J (2009) 1.15
Deciphering transcriptional and metabolic networks associated with lysine metabolism during Arabidopsis seed development. Plant Physiol (2009) 1.15
Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment. Methods Mol Biol (2009) 1.08
Two-mode clustering methods: a structured overview. Stat Methods Med Res (2004) 1.03
Biclustering of gene expression data using reactive greedy randomized adaptive search procedure. BMC Bioinformatics (2009) 1.02
The lysine-ketoglutarate reductase-saccharopine dehydrogenase is involved in the osmo-induced synthesis of pipecolic acid in rapeseed leaf tissues. Plant Physiol Biochem (2006) 0.98
Lysine catabolism, an effective versatile regulator of lysine level in plants. Amino Acids (2006) 0.96
Array platforms and bioinformatics tools for the analysis of plant transcriptome in response to abiotic stress. Methods Mol Biol (2010) 0.91
Synthesis of the Arabidopsis bifunctional lysine-ketoglutarate reductase/saccharopine dehydrogenase enzyme of lysine catabolism is concertedly regulated by metabolic and stress-associated signals. Plant Physiol (2003) 0.91
Arabidopsis thaliana as a model organism in systems biology. Wiley Interdiscip Rev Syst Biol Med (2010) 0.90
Coordinations between gene modules control the operation of plant amino acid metabolic networks. BMC Syst Biol (2009) 0.89
Principal transcriptional regulation and genome-wide system interactions of the Asp-family and aromatic amino acid networks of amino acid metabolism in plants. Amino Acids (2010) 0.84
Co-expression analysis of metabolic pathways in plants. Methods Mol Biol (2009) 0.82
Detection of protein-protein interactions in plants using bimolecular fluorescence complementation. Plant J (2004) 3.47
Highway or byway: the metabolic role of the GABA shunt in plants. Trends Plant Sci (2007) 2.12
Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Plant Physiol (2006) 2.01
Overexpression of a plasma membrane aquaporin in transgenic tobacco improves plant vigor under favorable growth conditions but not under drought or salt stress. Plant Cell (2003) 1.84
Production of glucocerebrosidase with terminal mannose glycans for enzyme replacement therapy of Gaucher's disease using a plant cell system. Plant Biotechnol J (2007) 1.82
New insights into the shikimate and aromatic amino acids biosynthesis pathways in plants. Mol Plant (2010) 1.66
Principal transcriptional programs regulating plant amino acid metabolism in response to abiotic stresses. Plant Physiol (2008) 1.58
Increased lysine synthesis coupled with a knockout of its catabolism synergistically boosts lysine content and also transregulates the metabolism of other amino acids in Arabidopsis seeds. Plant Cell (2003) 1.48
Seed desiccation: a bridge between maturation and germination. Trends Plant Sci (2010) 1.43
Improving the content of essential amino acids in crop plants: goals and opportunities. Plant Physiol (2008) 1.31
Carotenoid cleavage dioxygenase4 is a negative regulator of β-carotene content in Arabidopsis seeds. Plant Cell (2013) 1.27
The autophagy-associated Atg8 gene family operates both under favourable growth conditions and under starvation stresses in Arabidopsis plants. J Exp Bot (2005) 1.27
Variations on a theme: plant autophagy in comparison to yeast and mammals. Protoplasma (2011) 1.18
A seed high-lysine trait is negatively associated with the TCA cycle and slows down Arabidopsis seed germination. New Phytol (2010) 1.16
Deciphering transcriptional and metabolic networks associated with lysine metabolism during Arabidopsis seed development. Plant Physiol (2009) 1.15
A new type of compartment, defined by plant-specific Atg8-interacting proteins, is induced upon exposure of Arabidopsis plants to carbon starvation. Plant Cell (2012) 1.12
An autophagy-associated Atg8 protein is involved in the responses of Arabidopsis seedlings to hormonal controls and abiotic stresses. J Exp Bot (2008) 1.12
The Biosynthetic Pathways for Shikimate and Aromatic Amino Acids in Arabidopsis thaliana. Arabidopsis Book (2010) 1.07
Lysine metabolism is concurrently regulated by synthesis and catabolism in both reproductive and vegetative tissues. Plant Physiol (2004) 1.06
Cystathionine gamma-synthase and threonine synthase operate in concert to regulate carbon flow towards methionine in plants. Trends Plant Sci (2002) 1.05
ER-derived compartments are formed by highly regulated processes and have special functions in plants. Plant Physiol (2004) 1.02
Metabolic engineering of the plant primary-secondary metabolism interface. Curr Opin Biotechnol (2010) 1.00
Expression of a bacterial bi-functional chorismate mutase/prephenate dehydratase modulates primary and secondary metabolism associated with aromatic amino acids in Arabidopsis. Plant J (2009) 0.98
Targeted enhancement of glutamate-to-γ-aminobutyrate conversion in Arabidopsis seeds affects carbon-nitrogen balance and storage reserves in a development-dependent manner. Plant Physiol (2011) 0.96
Isolation of a premycorrhizal infection (pmi2) mutant of tomato, resistant to arbuscular mycorrhizal fungal colonization. Mol Plant Microbe Interact (2003) 0.92
The multifaceted role of aspartate-family amino acids in plant metabolism. J Exp Bot (2012) 0.91
Synthesis of the Arabidopsis bifunctional lysine-ketoglutarate reductase/saccharopine dehydrogenase enzyme of lysine catabolism is concertedly regulated by metabolic and stress-associated signals. Plant Physiol (2003) 0.91
Coordinations between gene modules control the operation of plant amino acid metabolic networks. BMC Syst Biol (2009) 0.89
The bifunctional LKR/SDH locus of plants also encodes a highly active monofunctional lysine-ketoglutarate reductase using a polyadenylation signal located within an intron. Plant Physiol (2002) 0.87
Dissection of the functional surface of an anti-insect excitatory toxin illuminates a putative "hot spot" common to all scorpion beta-toxins affecting Na+ channels. J Biol Chem (2003) 0.86
Regulatory role of cystathionine-gamma-synthase and de novo synthesis of methionine in ethylene production during tomato fruit ripening. Plant Mol Biol (2006) 0.86
The activity of the Arabidopsis bifunctional lysine-ketoglutarate reductase/saccharopine dehydrogenase enzyme of lysine catabolism is regulated by functional interaction between its two enzyme domains. J Biol Chem (2002) 0.86
Enhanced formation of aromatic amino acids increases fragrance without affecting flower longevity or pigmentation in Petunia × hybrida. Plant Biotechnol J (2014) 0.84
Principal transcriptional regulation and genome-wide system interactions of the Asp-family and aromatic amino acid networks of amino acid metabolism in plants. Amino Acids (2010) 0.84
The Arabidopsis exocyst subcomplex subunits involved in a golgi-independent transport into the vacuole possess consensus autophagy-associated atg8 interacting motifs. Plant Signal Behav (2013) 0.81
Deciphering energy-associated gene networks operating in the response of Arabidopsis plants to stress and nutritional cues. Plant J (2012) 0.81
Cloning and characterization of Arabidopsis homologues of the animal CstF complex that regulates 3' mRNA cleavage and polyadenylation. J Exp Bot (2002) 0.80
Lead accumulation in the aquatic fern Azolla filiculoides. Plant Physiol Biochem (2004) 0.80
Using RNAi to improve plant nutritional value: from mechanism to application. Trends Biotechnol (2004) 0.80
Transcriptional control of aspartate kinase expression during darkness and sugar depletion in Arabidopsis: involvement of bZIP transcription factors. Planta (2011) 0.79
Structure of ALD1, a plant-specific homologue of the universal diaminopimelate aminotransferase enzyme of lysine biosynthesis. Acta Crystallogr Sect F Struct Biol Cryst Commun (2013) 0.78
Metabolism: Amino acid regulatory wisdom. Nat Chem Biol (2011) 0.77
Near-isogenic lines for measuring phenotypic effects of DIMBOA-Glc methyltransferase activity in maize. Plant Signal Behav (2013) 0.77
ATI1, a newly identified atg8-interacting protein, binds two different Atg8 homologs. Plant Signal Behav (2012) 0.76
A friend in need is a friend indeed: understanding stress-associated transcriptional networks of plant metabolism using cliques of coordinately expressed genes. Plant Signal Behav (2011) 0.76
Selective autophagy in the aid of plant germination and response to nutrient starvation. Autophagy (2012) 0.76
Characterization of monofunctional aspartate kinase genes in maize and their relationship with free amino acid content in the endosperm. J Exp Bot (2007) 0.76