Published in PLoS One on February 03, 2016
Uncovering leaf rust responsive miRNAs in wheat (Triticum aestivum L.) using high-throughput sequencing and prediction of their targets through degradome analysis. Planta (2016) 0.76
Cellular and molecular characterization of a stem rust resistance locus on wheat chromosome 7AL. BMC Res Notes (2016) 0.75
Comparative Temporal Transcriptome Profiling of Wheat near Isogenic Line Carrying Lr57 under Compatible and Incompatible Interactions. Front Plant Sci (2016) 0.75
Genome-wide identification and characterization of NB-ARC resistant genes in wheat (Triticum aestivum L.) and their expression during leaf rust infection. Plant Cell Rep (2017) 0.75
SOAP: short oligonucleotide alignment program. Bioinformatics (2008) 68.13
Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol (2011) 53.86
Versatile and open software for comparing large genomes. Genome Biol (2004) 49.45
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics (2005) 46.40
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics (2006) 43.68
ABySS: a parallel assembler for short read sequence data. Genome Res (2009) 43.20
The plant immune system. Nature (2006) 33.70
KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res (2007) 29.46
Integration of biological networks and gene expression data using Cytoscape. Nat Protoc (2007) 27.10
BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics (2005) 24.04
Pfam: the protein families database. Nucleic Acids Res (2013) 22.48
WEGO: a web tool for plotting GO annotations. Nucleic Acids Res (2006) 13.06
HMMER web server: interactive sequence similarity searching. Nucleic Acids Res (2011) 13.00
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res (2004) 10.40
Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels. Bioinformatics (2012) 9.68
FLS2: an LRR receptor-like kinase involved in the perception of the bacterial elicitor flagellin in Arabidopsis. Mol Cell (2000) 9.14
Perception of the bacterial PAMP EF-Tu by the receptor EFR restricts Agrobacterium-mediated transformation. Cell (2006) 7.28
Plant stomata function in innate immunity against bacterial invasion. Cell (2006) 7.14
Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature (2012) 5.67
Activation and function of the MAPKs and their substrates, the MAPK-activated protein kinases. Microbiol Mol Biol Rev (2011) 5.02
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science (2014) 4.80
De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification. DNA Res (2011) 4.06
The Top 10 fungal pathogens in molecular plant pathology. Mol Plant Pathol (2012) 4.03
Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor. Proc Natl Acad Sci U S A (2006) 3.78
Genome plasticity a key factor in the success of polyploid wheat under domestication. Science (2007) 3.69
Sugar transporters for intercellular exchange and nutrition of pathogens. Nature (2010) 3.60
Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature (2013) 3.40
Real-time quantitative RT-PCR: design, calculations, and statistics. Plant Cell (2009) 3.37
Dynamics of gene expression revealed by comparison of serial analysis of gene expression transcript profiles from yeast grown on two different carbon sources. Mol Biol Cell (1999) 3.30
Wall extensibility: its nature, measurement and relationship to plant cell growth. New Phytol (1993) 3.28
Identification and validation of reference genes for quantitative RT-PCR normalization in wheat. BMC Mol Biol (2009) 3.04
Emerging MAP kinase pathways in plant stress signalling. Trends Plant Sci (2005) 2.97
The phenylpropanoid pathway and plant defence-a genomics perspective. Mol Plant Pathol (2002) 2.93
OrfPredictor: predicting protein-coding regions in EST-derived sequences. Nucleic Acids Res (2005) 2.82
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. Nucleic Acids Res (2013) 2.71
Salicylic acid inhibits pathogen growth in plants through repression of the auxin signaling pathway. Curr Biol (2007) 2.48
Expressed sequence tags: alternative or complement to whole genome sequences? Trends Plant Sci (2003) 2.35
Shades of gray: the world of quantitative disease resistance. Trends Plant Sci (2008) 2.10
Chlorophyll breakdown: pheophorbide a oxygenase is a Rieske-type iron-sulfur protein, encoded by the accelerated cell death 1 gene. Proc Natl Acad Sci U S A (2003) 2.04
Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell (2011) 1.98
Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat. BMC Plant Biol (2012) 1.88
SyMAP: A system for discovering and viewing syntenic regions of FPC maps. Genome Res (2006) 1.86
Nonhost resistance: how much do we know? Trends Plant Sci (2004) 1.84
Enhanced tolerance to environmental stress in transgenic plants expressing the transcriptional coactivator multiprotein bridging factor 1c. Plant Physiol (2005) 1.76
Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B. Plant J (2006) 1.70
De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq. BMC Genomics (2010) 1.68
Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and histochemistry. J Exp Bot (2011) 1.67
RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis. Plant Mol Biol (2011) 1.66
De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum). BMC Genomics (2011) 1.62
Elevated early callose deposition results in complete penetration resistance to powdery mildew in Arabidopsis. Plant Physiol (2013) 1.60
Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data. BMC Genomics (2012) 1.54
RUPTURED POLLEN GRAIN1, a member of the MtN3/saliva gene family, is crucial for exine pattern formation and cell integrity of microspores in Arabidopsis. Plant Physiol (2008) 1.54
Monitoring the switch from housekeeping to pathogen defense metabolism in Arabidopsis thaliana using cDNA arrays. J Biol Chem (2001) 1.45
Cell walls of developing wheat starchy endosperm: comparison of composition and RNA-Seq transcriptome. Plant Physiol (2011) 1.43
PRGdb: a bioinformatics platform for plant resistance gene analysis. Nucleic Acids Res (2009) 1.40
Photosynthesis, photorespiration, and light signalling in defence responses. J Exp Bot (2012) 1.36
Lipids, lipases, and lipid-modifying enzymes in plant disease resistance. Annu Rev Phytopathol (2005) 1.35
Extracellular leucine-rich repeats as a platform for receptor/coreceptor complex formation. Proc Natl Acad Sci U S A (2011) 1.34
Auxin regulation and spatial localization of an endo-1,4-beta-D-glucanase and a xyloglucan endotransglycosylase in expanding tomato hypocotyls. Plant J (1997) 1.34
Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence. BMC Genomics (2011) 1.33
Manipulating broad-spectrum disease resistance by suppressing pathogen-induced auxin accumulation in rice. Plant Physiol (2010) 1.33
Pseudomonas syringae pv. tomato cells encounter inhibitory levels of water stress during the hypersensitive response of Arabidopsis thaliana. Proc Natl Acad Sci U S A (2004) 1.25
Construction and evaluation of cDNA libraries for large-scale expressed sequence tag sequencing in wheat (Triticum aestivum L.). Genetics (2004) 1.23
Separating homeologs by phasing in the tetraploid wheat transcriptome. Genome Biol (2013) 1.23
Genome-wide cloning and sequence analysis of leucine-rich repeat receptor-like protein kinase genes in Arabidopsis thaliana. BMC Genomics (2010) 1.23
The Arabidopsis ATAF1, a NAC transcription factor, is a negative regulator of defense responses against necrotrophic fungal and bacterial pathogens. Mol Plant Microbe Interact (2009) 1.21
Combining transcriptome assemblies from multiple de novo assemblers in the allo-tetraploid plant Nicotiana benthamiana. PLoS One (2014) 1.15
RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.). Genome Biol (2011) 1.07
Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat. BMC Genomics (2012) 1.05
Probing plant-pathogen interactions and downstream defense signaling using DNA microarrays. Funct Integr Genomics (2002) 1.04
MAPK machinery in plants: recognition and response to different stresses through multiple signal transduction pathways. Plant Signal Behav (2010) 1.02
Dynamic intracellular reorganization of cytoskeletons and the vacuole in defense responses and hypersensitive cell death in plants. J Plant Res (2011) 1.01
Rapid development of PCR-based genome-specific repetitive DNA junction markers in wheat. Genome (2009) 1.01
Transcriptome analysis of H2O2-treated wheat seedlings reveals a H2O2-responsive fatty acid desaturase gene participating in powdery mildew resistance. PLoS One (2011) 1.00
Optimization of de novo transcriptome assembly from high-throughput short read sequencing data improves functional annotation for non-model organisms. BMC Bioinformatics (2012) 0.99
Plant sciences. Self-rejection--a new kinase connection. Science (2004) 0.98
Coordinated gene networks regulating Arabidopsis plant metabolism in response to various stresses and nutritional cues. Plant Cell (2011) 0.97
Tobacco bZIP transcription factor TGA2.2 and related factor TGA2.1 have distinct roles in plant defense responses and plant development. Plant J (2005) 0.97
De novo transcriptome sequencing and comparative analysis of differentially expressed genes in Gossypium aridum under salt stress. Gene (2013) 0.91
Molecular cloning, recombinant gene expression, and antifungal activity of cystatin from taro (Colocasia esculenta cv. Kaosiung no. 1). Planta (2005) 0.90
New TAXI-type xylanase inhibitor genes are inducible by pathogens and wounding in hexaploid wheat. Plant Cell Physiol (2004) 0.87
Temporal gene expression profiling of the wheat leaf rust pathosystem using cDNA microarray reveals differences in compatible and incompatible defence pathways. Int J Plant Genomics (2007) 0.86
Transcriptome-wide analysis of WRKY transcription factors in wheat and their leaf rust responsive expression profiling. Mol Genet Genomics (2014) 0.85
Transcriptomic and proteomic analyses of resistant host responses in Arachis diogoi challenged with late leaf spot pathogen, Phaeoisariopsis personata. PLoS One (2015) 0.81
The radical induced cell death protein 1 (RCD1) supports transcriptional activation of genes for chloroplast antioxidant enzymes. Front Plant Sci (2014) 0.81
A pipeline for the de novo assembly of the Themira biloba (Sepsidae: Diptera) transcriptome using a multiple k-mer length approach. BMC Genomics (2014) 0.81
Targeted spatio-temporal expression based characterization of state of infection and time-point of maximum defense in wheat NILs during leaf rust infection. Mol Biol Rep (2012) 0.81
Comprehensive functional analyses of expressed sequence tags in common wheat (Triticum aestivum). DNA Res (2012) 0.79
Inheritance of leaf rust resistance in wheat lines carrying Aegilops speltoides Tausch. translocation in Chinese Spring background. J Appl Genet (2008) 0.79
Stage-specific reprogramming of gene expression characterizes Lr48-mediated adult plant leaf rust resistance in wheat. Funct Integr Genomics (2014) 0.76