Ultrasensitive microarray detection of short RNA sequences with enzymatically modified nanoparticles and surface plasmon resonance imaging measurements.

PubWeight™: 0.97‹?› | Rank: Top 15%

🔗 View Article (PMC 3097511)

Published in Anal Chem on April 27, 2011

Authors

Wen-Juan Zhou1, Yulin Chen, Robert M Corn

Author Affiliations

1: Department of Chemistry, University of California-Irvine, Irvine, California 92697, USA.

Articles citing this

Lessons from human teratomas to guide development of safe stem cell therapies. Nat Biotechnol (2012) 1.43

Anti-DNA:RNA antibodies and silicon photonic microring resonators: increased sensitivity for multiplexed microRNA detection. Anal Chem (2011) 1.08

Surface Enzyme Chemistries for Ultrasensitive Microarray Biosensing with SPR Imaging. Langmuir (2015) 0.84

Zeptomole detection of C-reactive protein in serum by a nanoparticle amplified surface plasmon resonance imaging aptasensor. Sci Rep (2014) 0.84

Sensitive and label-free biosensing of RNA with predicted secondary structures by a triplex affinity capture method. Nucleic Acids Res (2012) 0.81

Label-Free Nanoplasmonic-Based Short Noncoding RNA Sensing at Attomolar Concentrations Allows for Quantitative and Highly Specific Assay of MicroRNA-10b in Biological Fluids and Circulating Exosomes. ACS Nano (2015) 0.80

Spherical nucleic acids as a divergent platform for synthesizing RNA-nanoparticle conjugates through enzymatic ligation. ACS Nano (2014) 0.80

DNAzyme footprinting: detecting protein-aptamer complexation on surfaces by blocking DNAzyme cleavage activity. J Am Chem Soc (2013) 0.80

Direct quantification of microRNA at low picomolar level in sera of glioma patients using a competitive hybridization followed by amplified voltammetric detection. Anal Chem (2012) 0.77

Fabrication of DNA microarrays on polydopamine-modified gold thin films for SPR imaging measurements. Langmuir (2013) 0.76

Nanotechnology-Based Surface Plasmon Resonance Affinity Biosensors for In Vitro Diagnostics. Int J Anal Chem (2016) 0.75

Digital imprinting of RNA recognition and processing on a self-assembled nucleic acid matrix. Sci Rep (2013) 0.75

Articles cited by this

MicroRNAs: genomics, biogenesis, mechanism, and function. Cell (2004) 198.59

Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res (2003) 77.89

MicroRNA expression profiles classify human cancers. Nature (2005) 69.12

miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res (2006) 39.25

MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet (2004) 37.83

Circulating microRNAs as stable blood-based markers for cancer detection. Proc Natl Acad Sci U S A (2008) 33.65

MicroRNA biogenesis: coordinated cropping and dicing. Nat Rev Mol Cell Biol (2005) 18.94

Ribo-gnome: the big world of small RNAs. Science (2005) 10.10

A custom microarray platform for analysis of microRNA gene expression. Nat Methods (2004) 9.44

Microarray-based, high-throughput gene expression profiling of microRNAs. Nat Methods (2004) 5.45

Simple, quantitative primer-extension PCR assay for direct monitoring of microRNAs and short-interfering RNAs. RNA (2005) 5.20

An optimized isolation and labeling platform for accurate microRNA expression profiling. RNA (2005) 3.12

Surface plasmon resonance imaging measurements of antibody arrays for the multiplexed detection of low molecular weight protein biomarkers. Anal Chem (2006) 1.56

Attomole microarray detection of microRNAs by nanoparticle-amplified SPR imaging measurements of surface polyadenylation reactions. J Am Chem Soc (2006) 1.53

Multiplexed detection methods for profiling microRNA expression in biological samples. Angew Chem Int Ed Engl (2008) 1.41

Fabrication of DNA microarrays with poly(L-glutamic acid) monolayers on gold substrates for SPR imaging measurements. Langmuir (2009) 1.38

Direct detection of genomic DNA by enzymatically amplified SPR imaging measurements of RNA microarrays. J Am Chem Soc (2004) 1.36

Creating advanced multifunctional biosensors with surface enzymatic transformations. Langmuir (2006) 1.35

Fabrication and characterization of RNA aptamer microarrays for the study of protein-aptamer interactions with SPR imaging. Nucleic Acids Res (2006) 1.30

Fabrication of silica-coated gold nanorods functionalized with DNA for enhanced surface plasmon resonance imaging biosensing applications. Langmuir (2009) 1.22

Cancer biomarker profiling with microRNAs. Nat Biotechnol (2008) 1.19

SPR imaging measurements of 1-D and 2-D DNA microarrays created from microfluidic channels on gold thin films. Anal Chem (2001) 1.13

Attomole detection of mesophilic DNA polymerase products by nanoparticle-enhanced surface plasmon resonance imaging on glassified gold surfaces. J Am Chem Soc (2010) 1.04

Surface plasmon resonance-based highly sensitive immunosensing for brain natriuretic peptide using nanobeads for signal amplification. Anal Biochem (2006) 1.01

Surface plasmon resonance phase imaging measurements of patterned monolayers and DNA adsorption onto microarrays. Anal Chem (2011) 0.93

Development of a low-cost detection method for miRNA microarray. Acta Biochim Biophys Sin (Shanghai) (2010) 0.82

Articles by these authors

Mice genetically deficient in vasopressin V1a and V1b receptors are resistant to jet lag. Science (2013) 3.51

Aharonov-Bohm interference in topological insulator nanoribbons. Nat Mater (2009) 3.09

Surface plasmon resonance imaging studies of protein-carbohydrate interactions. J Am Chem Soc (2003) 1.96

Ambipolar field effect in the ternary topological insulator (Bi(x)Sb(1-x))2Te3 by composition tuning. Nat Nanotechnol (2011) 1.75

Characterization and optimization of peptide arrays for the study of epitope-antibody interactions using surface plasmon resonance imaging. Anal Chem (2002) 1.72

Rapid surface oxidation as a source of surface degradation factor for Bi₂Se₃. ACS Nano (2011) 1.61

Detection of protein biomarkers using RNA aptamer microarrays and enzymatically amplified surface plasmon resonance imaging. Anal Chem (2007) 1.56

Surface plasmon resonance imaging measurements of antibody arrays for the multiplexed detection of low molecular weight protein biomarkers. Anal Chem (2006) 1.56

Attomole microarray detection of microRNAs by nanoparticle-amplified SPR imaging measurements of surface polyadenylation reactions. J Am Chem Soc (2006) 1.53

Topological insulator nanostructures for near-infrared transparent flexible electrodes. Nat Chem (2012) 1.45

Multiplexed detection methods for profiling microRNA expression in biological samples. Angew Chem Int Ed Engl (2008) 1.41

Microarray methods for protein biomarker detection. Analyst (2008) 1.40

Fabrication of DNA microarrays with poly(L-glutamic acid) monolayers on gold substrates for SPR imaging measurements. Langmuir (2009) 1.38

Direct detection of genomic DNA by enzymatically amplified SPR imaging measurements of RNA microarrays. J Am Chem Soc (2004) 1.36

Surface plasmon resonance imaging as a tool to monitor biomolecular interactions in an array based format. Appl Spectrosc (2003) 1.35

Creating advanced multifunctional biosensors with surface enzymatic transformations. Langmuir (2006) 1.35

Fabrication and characterization of RNA aptamer microarrays for the study of protein-aptamer interactions with SPR imaging. Nucleic Acids Res (2006) 1.30

Construction of a SNP-based genetic linkage map in cultivated peanut based on large scale marker development using next-generation double-digest restriction-site-associated DNA sequencing (ddRADseq). BMC Genomics (2014) 1.30

Fabrication of silica-coated gold nanorods functionalized with DNA for enhanced surface plasmon resonance imaging biosensing applications. Langmuir (2009) 1.22

Real-time surface plasmon resonance imaging measurements for the multiplexed determination of protein adsorption/desorption kinetics and surface enzymatic reactions on peptide microarrays. Anal Chem (2004) 1.21

KEGG-PATH: Kyoto encyclopedia of genes and genomes-based pathway analysis using a path analysis model. Mol Biosyst (2014) 1.20

Single-nucleotide polymorphism genotyping by nanoparticle-enhanced surface plasmon resonance imaging measurements of surface ligation reactions. Anal Chem (2006) 1.20

Enzymatically amplified surface plasmon resonance imaging detection of DNA by exonuclease III digestion of DNA microarrays. Anal Chem (2005) 1.19

Fabrication of histidine-tagged fusion protein arrays for surface plasmon resonance imaging studies of protein-protein and protein-DNA interactions. Anal Chem (2003) 1.17

Long-range surface plasmon resonance imaging for bioaffinity sensors. Anal Chem (2005) 1.11

Carbon-on-metal films for surface plasmon resonance detection of DNA arrays. J Am Chem Soc (2008) 1.10

Topological insulator nanowires and nanoribbons. Nano Lett (2010) 1.09

Enzymatically amplified surface plasmon resonance imaging method using RNase H and RNA microarrays for the ultrasensitive detection of nucleic acids. Anal Chem (2004) 1.07

Chemical and genetic wrappers for improved phage and RNA display. Chembiochem (2008) 1.05

Attomole detection of mesophilic DNA polymerase products by nanoparticle-enhanced surface plasmon resonance imaging on glassified gold surfaces. J Am Chem Soc (2010) 1.04

Nanoparticle-enhanced diffraction gratings for ultrasensitive surface plasmon biosensing. Anal Chem (2007) 1.00

Ultrasensitive DNA microarray biosensing via in situ RNA transcription-based amplification and nanoparticle-enhanced SPR imaging. J Am Chem Soc (2011) 1.00

Single-nanoparticle near-infrared surface plasmon resonance microscopy for real-time measurements of DNA hybridization adsorption. ACS Nano (2013) 0.99

Controlled synthesis of topological insulator nanoplate arrays on mica. J Am Chem Soc (2012) 0.97

Nanoparticle diffraction gratings for DNA detection on photopatterned glass substrates. Biointerphases (2008) 0.97

Synthesis and characterization of covalently linked single-stranded DNA oligonucleotide-dendron conjugates. Bioconjug Chem (2003) 0.97

Determination of ribonuclease H surface enzyme kinetics by surface plasmon resonance imaging and surface plasmon fluorescence spectroscopy. Anal Chem (2005) 0.96

On-chip synthesis of RNA aptamer microarrays for multiplexed protein biosensing with SPR imaging measurements. Langmuir (2012) 0.95

Near infrared surface plasmon resonance phase imaging and nanoparticle-enhanced surface plasmon resonance phase imaging for ultrasensitive protein and DNA biosensing with oligonucleotide and aptamer microarrays. Anal Chem (2011) 0.95

Surface plasmon resonance phase imaging measurements of patterned monolayers and DNA adsorption onto microarrays. Anal Chem (2011) 0.93

Discovery of cashmere goat (Capra hircus) microRNAs in skin and hair follicles by Solexa sequencing. BMC Genomics (2013) 0.93

Fabricating RNA microarrays with RNA-DNA surface ligation chemistry. Anal Chem (2005) 0.93

An updated nomenclature for keratin-associated proteins (KAPs). Int J Biol Sci (2012) 0.92

Exploring differentially expressed genes by RNA-Seq in cashmere goat (Capra hircus) skin during hair follicle development and cycling. PLoS One (2013) 0.91

Surface enzyme kinetics for biopolymer microarrays: a combination of Langmuir and Michaelis-Menten concepts. Langmuir (2005) 0.90

Flexible Teflon nanocone array surfaces with tunable superhydrophobicity for self-cleaning and aqueous droplet patterning. ACS Appl Mater Interfaces (2014) 0.90

Rapid microarray detection of DNA and proteins in microliter volumes with surface plasmon resonance imaging measurements. Langmuir (2011) 0.88

Protective effect of celastrol in rat cerebral ischemia model: down-regulating p-JNK, p-c-Jun and NF-κB. Brain Res (2012) 0.88

Label-free detection of 16S ribosomal RNA hybridization on reusable DNA arrays using surface plasmon resonance imaging. Environ Microbiol (2002) 0.88

Tris(tetra-methyl-ammonium) tetra-μ(2)-sulfido-tetra-sulfidocopper(I)dimolyb-denum(VI) N,N-dimethyl-formamide solvate. Acta Crystallogr Sect E Struct Rep Online (2008) 0.87

[Multicenter clinical trial on the efficacy of thrombolytic therapy with urokinase and/or anticoagulant with low molecular weight heparin in acute pulmonary embolism]. Zhonghua Nei Ke Za Zhi (2002) 0.86

Characterization of electrodeposited gold and palladium nanowire gratings with optical diffraction measurements. Anal Chem (2009) 0.85

Electrodeposition of polydopamine thin films for DNA patterning and microarrays. Anal Chem (2013) 0.84

On-chip synthesis of protein microarrays from DNA microarrays via coupled in vitro transcription and translation for surface plasmon resonance imaging biosensor applications. J Am Chem Soc (2012) 0.82

Sema4D, the ligand for Plexin B1, suppresses c-Met activation and migration and promotes melanocyte survival and growth. J Invest Dermatol (2011) 0.82

Genome-wide CNV analysis in mouse induced pluripotent stem cells reveals dosage effect of pluripotent factors on genome integrity. BMC Genomics (2014) 0.82

Enhanced bioaffinity sensing using surface plasmons, surface enzyme reactions, nanoparticles and diffraction gratings. Analyst (2008) 0.81

Plexin B1 inhibits integrin-dependent pp125FAK and Rho activity in melanoma. Pigment Cell Melanoma Res (2010) 0.81

Generation of an artificial double promoter for protein expression in Bacillus subtilis through a promoter trap system. PLoS One (2013) 0.81

Chemically induced hairpin formation in DNA monolayers. J Am Chem Soc (2002) 0.81

Shrink-induced silica multiscale structures for enhanced fluorescence from DNA microarrays. Langmuir (2014) 0.81

Surface plasmon resonance imaging measurements of protein interactions with biopolymer microarrays. Methods Mol Biol (2006) 0.80

Accurate determination of S-phase fraction in proliferative cells by dual fluorescence and peroxidase immunohistochemistry with 5-bromo-2'-deoxyuridine (BrdU) and Ki67 antibodies. J Histochem Cytochem (2011) 0.80

DNAzyme footprinting: detecting protein-aptamer complexation on surfaces by blocking DNAzyme cleavage activity. J Am Chem Soc (2013) 0.80

Lithographically patterned electrodeposition of gold, silver, and nickel nanoring arrays with widely tunable near-infrared plasmonic resonances. ACS Nano (2013) 0.80

Entrapment of bed bugs by leaf trichomes inspires microfabrication of biomimetic surfaces. J R Soc Interface (2013) 0.80

Quantitative functional analysis of protein complexes on surfaces. J Physiol (2004) 0.79

Simultaneous cloning and expression of two cellulase genes from Bacillus subtilis newly isolated from Golden Takin (Budorcas taxicolor Bedfordi). Biochem Biophys Res Commun (2009) 0.79

Wide-field, surface-sensitive four-wave mixing microscopy of nanostructures. Appl Opt (2012) 0.78

Fabrication of broadband antireflective plasmonic gold nanocone arrays on flexible polymer films. Nano Lett (2013) 0.77

Effects of different types of Helicobacter pylori on the gap junction intercellular communication in GES-1 cells. Zhong Nan Da Xue Xue Bao Yi Xue Ban (2011) 0.77

Increased osteogenesis in osteoporotic bone marrow stromal cells by overexpression of leptin. Cell Tissue Res (2015) 0.77

Silica nanowire arrays for diffraction-based bioaffinity sensing. Chemistry (2014) 0.77

Design and synthesis of fluorinated iron chelators for metabolic study and brain uptake. J Med Chem (2012) 0.76

Copy number variations of HLA-DRB5 is associated with systemic lupus erythematosus risk in Chinese Han population. Acta Biochim Biophys Sin (Shanghai) (2013) 0.76

Fabrication of DNA microarrays on polydopamine-modified gold thin films for SPR imaging measurements. Langmuir (2013) 0.76

Piezoelectrically driven vertical cavity acoustic transducers for the convective transport and rapid detection of DNA and protein binding to DNA microarrays with SPR imaging--a parametric study. Biosens Bioelectron (2012) 0.76

Fabricating nanoscale DNA patterns with gold nanowires. Anal Chem (2010) 0.76

Correction: Disruption of FGF5 in Cashmere Goats Using CRISPR/Cas9 Results in More Secondary Hair Follicles and Longer Fibers. PLoS One (2016) 0.75

[One case of stent-assisted coil embolization of coronary artery aneurysm in a patient with left main bifurcation lesions]. Zhonghua Xin Xue Guan Bing Za Zhi (2016) 0.75

[Overexpression and its clinical significance of multi-drug resistance associated genes in lung cancer tissues]. Zhongguo Fei Ai Za Zhi (2002) 0.75

[Effect of lipid protein complex on pulmonary vascular permeability in rats with severe burn]. Zhonghua Yi Xue Za Zhi (2002) 0.75

Direct detection of oxygen free radicals produced in the viscera of burned rats using electron paramagnetic resonance spectroscopy. Chin J Traumatol (2002) 0.75

[Development and application of a method for molecular diagnosis of 21-hydroxylase deficiency]. Zhonghua Yi Xue Yi Chuan Xue Za Zhi (2013) 0.75

Association between HLA-DQA1 gene copy number polymorphisms and susceptibility to rheumatoid arthritis in Chinese Han population. J Genet (2014) 0.75

Efficient generation of goats with defined point mutation (I397V) in GDF9 through CRISPR/Cas9. Reprod Fertil Dev (2017) 0.75

Insights from angle-resolved photoemission spectroscopy of an undoped four-layered two-gap high-T(c) superconductor. Phys Rev Lett (2007) 0.75

Corrigendum: Selectively enhanced photocurrent generation in twisted bilayer graphene with van Hove singularity. Nat Commun (2016) 0.75

Wafer-scale fabrication of nanofluidic arrays and networks using nanoimprint lithography and lithographically patterned nanowire electrodeposition gold nanowire masters. Anal Chem (2012) 0.75

Characterization and Application of Surface Plasmon-Enhanced Optical Diffraction from Electrodeposited Gold Nanowire Arrays. J Phys Chem Lett (2011) 0.75

Selective-area van der Waals epitaxy of topological insulator grid nanostructures for broadband transparent flexible electrodes. Adv Mater (2013) 0.75

Interaction effects and superconductivity signatures in twisted double-bilayer WSe. Nanoscale Horiz (2020) 0.75