Published in BMC Genomics on May 09, 2014
The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nat Genet (2016) 1.52
Tetrasomic recombination is surprisingly frequent in allotetraploid Arachis. Genetics (2015) 0.94
Construction of a high density SNP linkage map of kelp (Saccharina japonica) by sequencing Taq I site associated DNA and mapping of a sex determining locus. BMC Genomics (2015) 0.87
Genomic survey sequencing for development and validation of single-locus SSR markers in peanut (Arachis hypogaea L.). BMC Genomics (2016) 0.85
Genotyping by sequencing approaches to characterise crop genomes: choosing the right tool for the right application. Plant Biotechnol J (2016) 0.85
Quantitative trait locus analysis for pod- and kernel-related traits in the cultivated peanut (Arachis hypogaea L.). BMC Genet (2016) 0.83
SWEEP: A Tool for Filtering High-Quality SNPs in Polyploid Crops. G3 (Bethesda) (2015) 0.83
SNP-based genetic linkage map of tobacco (Nicotiana tabacum L.) using next-generation RAD sequencing. J Biol Res (Thessalon) (2015) 0.82
Next-generation transcriptome sequencing, SNP discovery and validation in four market classes of peanut, Arachis hypogaea L. Mol Genet Genomics (2015) 0.82
Identification of SNP and SSR Markers in Finger Millet Using Next Generation Sequencing Technologies. PLoS One (2016) 0.82
Genomic Tools in Groundnut Breeding Program: Status and Perspectives. Front Plant Sci (2016) 0.81
Identification and Evaluation of Single-Nucleotide Polymorphisms in Allotetraploid Peanut (Arachis hypogaea L.) Based on Amplicon Sequencing Combined with High Resolution Melting (HRM) Analysis. Front Plant Sci (2015) 0.79
Molecular marker development from transcript sequences and germplasm evaluation for cultivated peanut (Arachis hypogaea L.). Mol Genet Genomics (2015) 0.79
Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Mol Plant (2016) 0.78
Co-localization of major quantitative trait loci for pod size and weight to a 3.7 cM interval on chromosome A05 in cultivated peanut (Arachis hypogaea L.). BMC Genomics (2017) 0.78
Development of INDEL Markers for Genetic Mapping Based on Whole Genome Resequencing in Soybean. G3 (Bethesda) (2015) 0.77
Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina. Front Plant Sci (2014) 0.77
QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.). Plant Biotechnol J (2016) 0.76
Genome-Wide Mapping of Growth-Related Quantitative Trait Loci in Orange-Spotted Grouper (Epinephelus coioides) Using Double Digest Restriction-Site Associated DNA Sequencing (ddRADseq). Int J Mol Sci (2016) 0.75
Quantitative Trait Locus Analysis of Late Leaf Spot Resistance and Plant-Type-Related Traits in Cultivated Peanut (Arachis hypogaea L.) under Multi-Environments. PLoS One (2016) 0.75
Construction of a high-density, high-quality genetic map of cultivated lotus (Nelumbo nucifera) using next-generation sequencing. BMC Genomics (2016) 0.75
A genome-wide SNP-based genetic map and QTL mapping for agronomic traits in Chinese cabbage. Sci Rep (2017) 0.75
Genetic mapping of yield traits using RIL population derived from Fuchuan Dahuasheng and ICG6375 of peanut (Arachis hypogaea L.). Mol Breed (2017) 0.75
Evidence of Genomic Exchanges between Homeologous Chromosomes in a Cross of Peanut with Newly Synthetized Allotetraploid Hybrids. Front Plant Sci (2016) 0.75
Construction of a high-density genetic map using specific-locus amplified fragments in sorghum. BMC Genomics (2017) 0.75
Fine-Mapping the Branching Habit Trait in Cultivated Peanut by Combining Bulked Segregant Analysis and High-Throughput Sequencing. Front Plant Sci (2017) 0.75
Genome-Wide Single-Nucleotide Polymorphisms Discovery and High-Density Genetic Map Construction in Cauliflower Using Specific-Locus Amplified Fragment Sequencing. Front Plant Sci (2016) 0.75
A High Density Genetic Map Derived from RAD Sequencing and Its Application in QTL Analysis of Yield-Related Traits in Vigna unguiculata. Front Plant Sci (2017) 0.75
A high-density linkage map and QTL mapping of fruit-related traits in pumpkin (Cucurbita moschata Duch.). Sci Rep (2017) 0.75
Molecular Mapping of Oil Content and Fatty Acids Using Dense Genetic Maps in Groundnut (Arachis hypogaea L.). Front Plant Sci (2017) 0.75
A first linkage map and downy mildew resistance QTL discovery for sweet basil (Ocimum basilicum) facilitated by double digestion restriction site associated DNA sequencing (ddRADseq). PLoS One (2017) 0.75
Construction of a high-density genetic map for grape using specific length amplified fragment (SLAF) sequencing. PLoS One (2017) 0.75
Development of SSR markers and identification of major quantitative trait loci controlling shelling percentage in cultivated peanut (Arachis hypogaea L.). Theor Appl Genet (2017) 0.75
SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics (2009) 39.47
MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered (2002) 17.48
Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One (2008) 13.64
NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PLoS One (2012) 9.30
Identification of genetic variants using bar-coded multiplexed sequencing. Nat Methods (2008) 7.50
The essence of SNPs. Gene (1999) 6.44
Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics (1994) 6.14
High-throughput genotyping by whole-genome resequencing. Genome Res (2009) 5.74
Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species. PLoS One (2012) 4.52
Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nat Genet (2011) 4.19
Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley. BMC Genomics (2011) 3.42
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics (2010) 3.40
Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing. Plant Biotechnol J (2009) 3.22
Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol. PLoS Genet (2013) 2.83
Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing. Proc Natl Acad Sci U S A (2010) 2.63
Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne. Theor Appl Genet (2011) 2.41
Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing. Nat Biotechnol (2011) 2.12
Chromosomal regions associated with segregation distortion in maize. Theor Appl Genet (2002) 2.06
The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.). Theor Appl Genet (2008) 2.04
Transmission genetics of chromatin from a synthetic amphidiploid to cultivated peanut (Arachis hypogaea L.). broadening the gene pool of a monophyletic polyploid species. Genetics (2001) 1.72
A SSR-based composite genetic linkage map for the cultivated peanut (Arachis hypogaea L.) genome. BMC Plant Biol (2010) 1.64
SNP Discovery through Next-Generation Sequencing and Its Applications. Int J Plant Genomics (2012) 1.46
In silico polymorphism analysis for the development of simple sequence repeat and transposon markers and construction of linkage map in cultivated peanut. BMC Plant Biol (2012) 1.45
An integrated genetic linkage map of cultivated peanut (Arachis hypogaea L.) constructed from two RIL populations. Theor Appl Genet (2011) 1.44
Genetic mapping of wild introgressions into cultivated peanut: a way toward enlarging the genetic basis of a recent allotetraploid. BMC Plant Biol (2009) 1.38
Paired-end RAD-seq for de novo assembly and marker design without available reference. Bioinformatics (2011) 1.33
Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology. BMC Genomics (2011) 1.29
Integrated consensus map of cultivated peanut and wild relatives reveals structures of the A and B genomes of Arachis and divergence of the legume genomes. DNA Res (2013) 1.24
Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). BMC Plant Biol (2012) 1.21
An international reference consensus genetic map with 897 marker loci based on 11 mapping populations for tetraploid groundnut (Arachis hypogaea L.). PLoS One (2012) 1.13
A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut. BMC Genomics (2012) 1.09
Construction of a high-density composite map and comparative mapping of segregation distortion regions in barley. Mol Genet Genomics (2010) 1.09
Construction and analysis of a high-density genetic linkage map in cabbage (Brassica oleracea L. var. capitata). BMC Genomics (2012) 1.09
Identification and mapping of AFLP markers linked to peanut (Arachis hypogaea L.) resistance to the aphid vector of groundnut rosette disease. Theor Appl Genet (2004) 1.05
Discovery of pod shatter-resistant associated SNPs by deep sequencing of a representative library followed by bulk segregant analysis in rapeseed. PLoS One (2012) 0.97
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads. Bioinformatics (2012) 0.96
Detection and genotyping of restriction fragment associated polymorphisms in polyploid crops with a pseudo-reference sequence: a case study in allotetraploid Brassica napus. BMC Genomics (2013) 0.94
A hybrid genetic linkage map of two ecologically and morphologically divergent Midas cichlid fishes (Amphilophus spp.) obtained by massively parallel DNA sequencing (ddRADSeq). G3 (Bethesda) (2013) 0.93
The genome of the mesopolyploid crop species Brassica rapa. Nat Genet (2011) 8.23
Mice genetically deficient in vasopressin V1a and V1b receptors are resistant to jet lag. Science (2013) 3.51
The 5-lipoxygenase pathway promotes pathogenesis of hyperlipidemia-dependent aortic aneurysm. Nat Med (2004) 3.34
Dendritic cell apoptosis in the maintenance of immune tolerance. Science (2006) 3.33
Aharonov-Bohm interference in topological insulator nanoribbons. Nat Mater (2009) 3.09
A complete sequence of the T. tengcongensis genome. Genome Res (2002) 2.60
Six1 is required for the early organogenesis of mammalian kidney. Development (2003) 2.47
Pax3 functions at a nodal point in melanocyte stem cell differentiation. Nature (2005) 2.37
Inhibition of ischemic cardiomyocyte apoptosis through targeted ablation of Bnip3 restrains postinfarction remodeling in mice. J Clin Invest (2007) 2.23
The role of Six1 in mammalian auditory system development. Development (2003) 2.22
Development of a virus-induced gene-silencing system for hexaploid wheat and its use in functional analysis of the Lr21-mediated leaf rust resistance pathway. Plant Physiol (2005) 2.02
Interleukin-6-driven progranulin expression increases cholangiocarcinoma growth by an Akt-dependent mechanism. Gut (2011) 1.91
Peripheral nociception associated with surgical incision elicits remote nonischemic cardioprotection via neurogenic activation of protein kinase C signaling. Circulation (2009) 1.86
Refractive error and visual impairment in school children in rural southern China. Ophthalmology (2006) 1.84
Ambipolar field effect in the ternary topological insulator (Bi(x)Sb(1-x))2Te3 by composition tuning. Nat Nanotechnol (2011) 1.75
Inhibition of HIV-1 maturation via drug association with the viral Gag protein in immature HIV-1 particles. J Biol Chem (2005) 1.66
Rapid surface oxidation as a source of surface degradation factor for Bi₂Se₃. ACS Nano (2011) 1.61
Novel cardioprotective role of a small heat-shock protein, Hsp20, against ischemia/reperfusion injury. Circulation (2005) 1.60
MicroRNA-143 as a tumor suppressor for bladder cancer. J Urol (2009) 1.56
The gene Sr33, an ortholog of barley Mla genes, encodes resistance to wheat stem rust race Ug99. Science (2013) 1.55
Inducible expression of active protein phosphatase-1 inhibitor-1 enhances basal cardiac function and protects against ischemia/reperfusion injury. Circ Res (2009) 1.52
Overexpression of histidine-rich Ca-binding protein protects against ischemia/reperfusion-induced cardiac injury. Cardiovasc Res (2007) 1.51
Sarcoplasmic reticulum calcium overloading in junctin deficiency enhances cardiac contractility but increases ventricular automaticity. Circulation (2007) 1.51
Assessment and prognostic significance of mitotic index using the mitosis marker phospho-histone H3 in low and intermediate-grade infiltrating astrocytomas. Am J Surg Pathol (2006) 1.50
Activation of estrogen receptor-alpha by the anion nitrite. Cancer Res (2008) 1.47
Expression and role of neuroglobin in rats with sepsis-associated encephalopathy. Crit Care Med (2014) 1.46
Topological insulator nanostructures for near-infrared transparent flexible electrodes. Nat Chem (2012) 1.45
Genome analyses of Icelandic strains of Sulfolobus islandicus, model organisms for genetic and virus-host interaction studies. J Bacteriol (2011) 1.45
Arabidopsis acyl-CoA-binding protein ACBP3 participates in plant response to hypoxia by modulating very-long-chain fatty acid metabolism. Plant J (2014) 1.44
Prognostic role of serum carbohydrate antigen 19-9 levels in patients with resectable hepatocellular carcinoma. Tumour Biol (2015) 1.42
Heat shock protein 20 interacting with phosphorylated Akt reduces doxorubicin-triggered oxidative stress and cardiotoxicity. Circ Res (2008) 1.40
MicroRNAome of porcine pre- and postnatal development. PLoS One (2010) 1.40
Coordinated post-transcriptional regulation of Hsp70.3 gene expression by microRNA and alternative polyadenylation. J Biol Chem (2011) 1.39
Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis. Genome Biol (2014) 1.38
The farnesoid X receptor controls gene expression in a ligand- and promoter-selective fashion. J Biol Chem (2003) 1.35
Direct activation of human and mouse Oct4 genes using engineered TALE and Cas9 transcription factors. Nucleic Acids Res (2014) 1.34
Guggulsterone is a farnesoid X receptor antagonist in coactivator association assays but acts to enhance transcription of bile salt export pump. J Biol Chem (2003) 1.33
Controllable disorder engineering in oxygen-incorporated MoS2 ultrathin nanosheets for efficient hydrogen evolution. J Am Chem Soc (2013) 1.28
Cardiac-specific blockade of NF-kappaB in cardiac pathophysiology: differences between acute and chronic stimuli in vivo. Am J Physiol Heart Circ Physiol (2005) 1.28
Deficiency of Bim in dendritic cells contributes to overactivation of lymphocytes and autoimmunity. Blood (2007) 1.27
Anti-AIDS agents. 78. Design, synthesis, metabolic stability assessment, and antiviral evaluation of novel betulinic acid derivatives as potent anti-human immunodeficiency virus (HIV) agents. J Med Chem (2009) 1.26
Sulfolobus tengchongensis spindle-shaped virus STSV1: virus-host interactions and genomic features. J Virol (2005) 1.26
Anti-AIDS agents 69. Moronic acid and other triterpene derivatives as novel potent anti-HIV agents. J Med Chem (2006) 1.25
Regulation of the lifespan in dendritic cell subsets. Mol Immunol (2007) 1.23
Cre reporter mouse expressing a nuclear localized fusion of GFP and beta-galactosidase reveals new derivatives of Pax3-expressing precursors. Genesis (2008) 1.23
Broadening the avenue of intersubgenomic heterosis in oilseed Brassica. Theor Appl Genet (2009) 1.22
Genome-wide microsatellite characterization and marker development in the sequenced Brassica crop species. DNA Res (2013) 1.22
KEGG-PATH: Kyoto encyclopedia of genes and genomes-based pathway analysis using a path analysis model. Mol Biosyst (2014) 1.20
Ssh10b, a conserved thermophilic archaeal protein, binds RNA in vivo. Mol Microbiol (2003) 1.20
Melanocyte-like cells in the heart and pulmonary veins contribute to atrial arrhythmia triggers. J Clin Invest (2009) 1.19
Design, synthesis, and preclinical evaluations of novel 4-substituted 1,5-diarylanilines as potent HIV-1 non-nucleoside reverse transcriptase inhibitor (NNRTI) drug candidates. J Med Chem (2012) 1.18
Silencing cAMP-response element-binding protein (CREB) identifies CYR61 as a tumor suppressor gene in melanoma. J Biol Chem (2009) 1.18
Metagenomic insights into the fibrolytic microbiome in yak rumen. PLoS One (2012) 1.17
New betulinic acid derivatives for bevirimat-resistant human immunodeficiency virus type-1. J Med Chem (2013) 1.16
H3.3 actively marks enhancers and primes gene transcription via opening higher-ordered chromatin. Genes Dev (2013) 1.14
Lithocholic acid decreases expression of bile salt export pump through farnesoid X receptor antagonist activity. J Biol Chem (2002) 1.14
Caspase-9-induced mitochondrial disruption through cleavage of anti-apoptotic BCL-2 family members. J Biol Chem (2007) 1.13
NF-kappaB as an integrator of diverse signaling pathways: the heart of myocardial signaling? Cardiovasc Toxicol (2003) 1.12
Betulinic acid derivatives as human immunodeficiency virus type 2 (HIV-2) inhibitors. J Med Chem (2009) 1.12
Revealing the essentiality of multiple archaeal pcna genes using a mutant propagation assay based on an improved knockout method. Microbiology (2010) 1.11
Loss of the miR-144/451 cluster impairs ischaemic preconditioning-mediated cardioprotection by targeting Rac-1. Cardiovasc Res (2012) 1.09
Topological insulator nanowires and nanoribbons. Nano Lett (2010) 1.09
Construction and analysis of a high-density genetic linkage map in cabbage (Brassica oleracea L. var. capitata). BMC Genomics (2012) 1.09
Anti-AIDS agents 79. Design, synthesis, molecular modeling and structure-activity relationships of novel dicamphanoyl-2',2'-dimethyldihydropyranochromone (DCP) analogs as potent anti-HIV agents. Bioorg Med Chem (2010) 1.08
Tanshinone IIA: A Promising Natural Cardioprotective Agent. Evid Based Complement Alternat Med (2012) 1.07
Where self-control comes from: on the development of self-control and its relationship to deviance over time. Dev Psychol (2010) 1.07
Reg4 protects against acinar cell necrosis in experimental pancreatitis. Gut (2010) 1.06
Ash2l interacts with Tbx1 and is required during early embryogenesis. Exp Biol Med (Maywood) (2010) 1.06
Diarylaniline derivatives as a distinct class of HIV-1 non-nucleoside reverse transcriptase inhibitors. J Med Chem (2010) 1.06
YAP/TEAD-mediated transcription controls cellular senescence. Cancer Res (2013) 1.06
Serum starvation induced cell cycle synchronization facilitates human somatic cells reprogramming. PLoS One (2012) 1.06
Genetic analysis of chikungunya viruses imported to mainland China in 2008. Virol J (2010) 1.05
Betulinic acid derivatives that target gp120 and inhibit multiple genetic subtypes of human immunodeficiency virus type 1. Antimicrob Agents Chemother (2007) 1.05
Blockade of Hsp20 phosphorylation exacerbates cardiac ischemia/reperfusion injury by suppressed autophagy and increased cell death. Circ Res (2009) 1.05
Anti-AIDS agents 81. Design, synthesis, and structure-activity relationship study of betulinic acid and moronic acid derivatives as potent HIV maturation inhibitors. J Med Chem (2010) 1.04
Nicotinamidase modulation of NAD+ biosynthesis and nicotinamide levels separately affect reproductive development and cell survival in C. elegans. Development (2009) 1.04
NF-kappaB in cardiovascular disease: diverse and specific effects of a "general" transcription factor? Cardiovasc Toxicol (2005) 1.04
Multivariate statistical analysis of heavy metals in street dust of Baoji, NW China. J Hazard Mater (2009) 1.04
Analysis of 106 kb of contiguous DNA sequence from the D genome of wheat reveals high gene density and a complex arrangement of genes related to disease resistance. Genome (2002) 1.03
Human herpesvirus 6 activates lytic cycle replication of Kaposi's sarcoma-associated herpesvirus. Am J Pathol (2005) 1.03
Biochemical and structural characterization of Cren7, a novel chromatin protein conserved among Crenarchaea. Nucleic Acids Res (2007) 1.03
Protease activated receptor-1 inhibits the Maspin tumor-suppressor gene to determine the melanoma metastatic phenotype. Proc Natl Acad Sci U S A (2010) 1.02
Identification of a NF-κB cardioprotective gene program: NF-κB regulation of Hsp70.1 contributes to cardioprotection after permanent coronary occlusion. J Mol Cell Cardiol (2011) 1.02
Overexpression of protease-activated receptor-1 contributes to melanoma metastasis via regulation of connexin 43. Cancer Res (2009) 1.02
Biochemical characterization of an ATP-dependent DNA ligase from the hyperthermophilic crenarchaeon Sulfolobus shibatae. Extremophiles (2002) 1.02
Bolbase: a comprehensive genomics database for Brassica oleracea. BMC Genomics (2013) 1.00
A natural small molecule harmine inhibits angiogenesis and suppresses tumour growth through activation of p53 in endothelial cells. PLoS One (2012) 1.00
Anti-AIDS agents 90. novel C-28 modified bevirimat analogues as potent HIV maturation inhibitors. J Med Chem (2012) 1.00
NF-kappaB driven cardioprotective gene programs; Hsp70.3 and cardioprotection after late ischemic preconditioning. J Mol Cell Cardiol (2010) 0.99
HDL of patients with type 2 diabetes mellitus elevates the capability of promoting breast cancer metastasis. Clin Cancer Res (2012) 0.99
Sulfolobus tengchongensis sp. nov., a novel thermoacidophilic archaeon isolated from a hot spring in Tengchong, China. Extremophiles (2003) 0.99
Enhanced binding affinity, remarkable selectivity, and high capacity of CO2 by dual functionalization of a rht-type metal-organic framework. Angew Chem Int Ed Engl (2011) 0.98
Optimization of 2,4-diarylanilines as non-nucleoside HIV-1 reverse transcriptase inhibitors. Bioorg Med Chem Lett (2012) 0.98
Porcine reproductive and respiratory syndrome virus induces autophagy to promote virus replication. Autophagy (2012) 0.98
Expression of Id-1 is regulated by MCAM/MUC18: a missing link in melanoma progression. Cancer Res (2011) 0.98
Characterization of the human UBE3B gene: structure, expression, evolution, and alternative splicing. Genomics (2003) 0.98
Upregulation of barrel GABAergic neurons is associated with cross-modal plasticity in olfactory deficit. PLoS One (2010) 0.98
Dynamics of chloroplast proteome in salt-stressed mangrove Kandelia candel (L.) Druce. J Proteome Res (2013) 0.98
MicroRNA-145 regulates human corneal epithelial differentiation. PLoS One (2011) 0.98
Discovery of pod shatter-resistant associated SNPs by deep sequencing of a representative library followed by bulk segregant analysis in rapeseed. PLoS One (2012) 0.97