Published in BMC Genomics on May 12, 2011
Genome-level homology and phylogeny of Vibrionaceae (Gammaproteobacteria: Vibrionales) with three new complete genome sequences. BMC Microbiol (2013) 0.87
Patterns and architecture of genomic islands in marine bacteria. BMC Genomics (2012) 0.85
LitR is a repressor of syp genes and has a temperature-sensitive regulatory effect on biofilm formation and colony morphology in Vibrio (Aliivibrio) salmonicida. Appl Environ Microbiol (2014) 0.85
Time course transcriptome changes in Shewanella algae in response to salt stress. PLoS One (2014) 0.84
Ribosomal multi-operon diversity: an original perspective on the genus Aeromonas. PLoS One (2012) 0.81
The Complete Genome of Brucella Suis 019 Provides Insights on Cross-Species Infection. Genes (Basel) (2016) 0.80
The Microbiota of Freshwater Fish and Freshwater Niches Contain Omega-3 Fatty Acid-Producing Shewanella Species. Appl Environ Microbiol (2015) 0.77
Evolution of a global regulator: Lrp in four orders of γ-Proteobacteria. BMC Evol Biol (2016) 0.75
Distribution, classification, domain architectures and evolution of prolyl oligopeptidases in prokaryotic lineages. BMC Genomics (2014) 0.75
Phylogenetic network analysis as a parsimony optimization problem. BMC Bioinformatics (2015) 0.75
The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol (1987) 266.90
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics (2006) 87.59
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res (2002) 47.62
Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci U S A (1977) 26.08
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One (2010) 24.31
Phylogenetic analysis. Models and estimation procedures. Am J Hum Genet (1967) 17.65
A phylogenomic study of birds reveals their evolutionary history. Science (2008) 9.00
Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39. Nucleic Acids Res (2000) 8.69
Circular genome visualization and exploration using CGView. Bioinformatics (2004) 7.78
Evidence for symmetric chromosomal inversions around the replication origin in bacteria. Genome Biol (2000) 5.40
Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov. Int J Syst Bacteriol (1999) 4.30
Taxonomy of aerobic marine eubacteria. J Bacteriol (1972) 3.09
Phylogenomics: intersection of evolution and genomics. Science (2003) 2.86
Bayesian estimation of concordance among gene trees. Mol Biol Evol (2006) 2.81
Dynamics of genome rearrangement in bacterial populations. PLoS Genet (2008) 2.78
Concerted evolution: molecular mechanism and biological implications. Am J Hum Genet (1999) 2.23
More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy. Mol Biol Evol (2005) 2.16
BEST: Bayesian estimation of species trees under the coalescent model. Bioinformatics (2008) 1.95
DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes. Proc Natl Acad Sci U S A (2001) 1.90
The ars detoxification system is advantageous but not required for As(V) respiration by the genetically tractable Shewanella species strain ANA-3. Appl Environ Microbiol (2003) 1.81
Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5 omega 3) and grow anaerobically by dissimilatory Fe(III) reduction. Int J Syst Bacteriol (1997) 1.76
Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol (1998) 1.59
Comparative gene mapping: order of loci on the X chromosome is different in mice and humans. Proc Natl Acad Sci U S A (1980) 1.52
Comparative systems biology across an evolutionary gradient within the Shewanella genus. Proc Natl Acad Sci U S A (2009) 1.47
Shewanella denitrificans sp. nov., a vigorously denitrifying bacterium isolated from the oxic-anoxic interface of the Gotland Deep in the central Baltic Sea. Int J Syst Evol Microbiol (2002) 1.28
Vibrio psychroerythrus sp. n.: classification of the psychrophilic marine bacterium, NRC 1004. J Bacteriol (1972) 1.23
Evolutionary and diagnostic implications of intragenomic heterogeneity in the 16S rRNA gene in Aeromonas strains. J Bacteriol (2005) 1.19
Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean. Int J Syst Evol Microbiol (2006) 1.18
Shewanella psychrophila sp. nov. and Shewanella piezotolerans sp. nov., isolated from west Pacific deep-sea sediment. Int J Syst Evol Microbiol (2007) 1.18
Shewanella amazonensis sp. nov., a novel metal-reducing facultative anaerobe from Amazonian shelf muds. Int J Syst Bacteriol (1998) 1.13
Shewanella woodyi sp. nov., an exclusively respiratory luminous bacterium isolated from the Alboran Sea. Int J Syst Bacteriol (1997) 1.04
Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment. Int J Syst Evol Microbiol (2005) 1.02
Shewanella pealeana sp. nov., a member of the microbial community associated with the accessory nidamental gland of the squid Loligo pealei. Int J Syst Bacteriol (1999) 0.99
Shewanella halifaxensis sp. nov., a novel obligately respiratory and denitrifying psychrophile. Int J Syst Evol Microbiol (2006) 0.96
The lux genes of the luminous bacterial symbiont, Photobacterium leiognathi, of the ponyfish. Nucleotide sequence, difference in gene organization, and high expression in mutant Escherichia coli. Eur J Biochem (1991) 0.94
Gene and genome trees conflict at many levels. Philos Trans R Soc Lond B Biol Sci (2009) 0.92
A whole-genome phylogeny of the family Pasteurellaceae. Mol Phylogenet Evol (2009) 0.83