Published in Genome Biol on December 04, 2000
Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res (2002) 17.31
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. PLoS Biol (2004) 7.95
Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. Proc Natl Acad Sci U S A (2004) 7.30
Genome sequence of Yersinia pestis KIM. J Bacteriol (2002) 7.14
The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts. Proc Natl Acad Sci U S A (2002) 5.28
Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species. PLoS Biol (2005) 5.22
Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T. Infect Immun (2003) 5.11
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world. Nucleic Acids Res (2008) 4.78
The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome. Proc Natl Acad Sci U S A (2008) 4.45
Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae. Nucleic Acids Res (2003) 4.33
Biodiversity of vibrios. Microbiol Mol Biol Rev (2004) 4.25
Comparative genomics of emerging human ehrlichiosis agents. PLoS Genet (2006) 4.23
Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum. Microbiol Mol Biol Rev (2007) 4.13
Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis. J Bacteriol (2004) 3.84
Visualization of comparative genomic analyses by BLAST score ratio. BMC Bioinformatics (2005) 3.54
Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer. Genome Res (2007) 3.45
High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak. BMC Genomics (2010) 3.09
Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution. Genome Res (2003) 2.96
Reductive genome evolution from the mother of Rickettsia. PLoS Genet (2007) 2.87
Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens. Genome Res (2006) 2.84
The process of genome shrinkage in the obligate symbiont Buchnera aphidicola. Genome Biol (2001) 2.84
Dynamics of genome rearrangement in bacterial populations. PLoS Genet (2008) 2.78
The evolution of the plastid chromosome in land plants: gene content, gene order, gene function. Plant Mol Biol (2011) 2.68
Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris. Genome Res (2005) 2.65
The value of complete microbial genome sequencing (you get what you pay for). J Bacteriol (2002) 2.58
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. BMC Genomics (2008) 2.51
Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens. PLoS Genet (2006) 2.35
Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor. Proc Natl Acad Sci U S A (2011) 2.22
KOPS: DNA motifs that control E. coli chromosome segregation by orienting the FtsK translocase. EMBO J (2005) 2.14
M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species. BMC Bioinformatics (2006) 1.92
Darwinian evolution in the light of genomics. Nucleic Acids Res (2009) 1.92
Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts. J Bacteriol (2006) 1.89
Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability. Genome Res (2012) 1.82
Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. PLoS Biol (2008) 1.80
Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome. Genome Res (2003) 1.80
The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes. J Bacteriol (2006) 1.79
Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes. J Bacteriol (2008) 1.79
Asymmetric directional mutation pressures in bacteria. Genome Biol (2002) 1.77
Gene essentiality determines chromosome organisation in bacteria. Nucleic Acids Res (2003) 1.74
A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581 T. Environ Microbiol (2010) 1.70
Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea. Genome Biol (2009) 1.69
Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes. J Bacteriol (2009) 1.64
Evaluating genome dynamics: the constraints on rearrangements within bacterial genomes. Genome Biol (2000) 1.64
The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity. PLoS Genet (2009) 1.64
Pyrococcus genome comparison evidences chromosome shuffling-driven evolution. Nucleic Acids Res (2002) 1.58
Chromosome evolution in the Thermotogales: large-scale inversions and strain diversification of CRISPR sequences. J Bacteriol (2006) 1.57
Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a. BMC Genomics (2006) 1.54
Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks. PLoS One (2007) 1.52
The genome of Streptococcus mitis B6--what is a commensal? PLoS One (2010) 1.51
Strain-specific genes of Helicobacter pylori: distribution, function and dynamics. Nucleic Acids Res (2001) 1.50
Genome sequence of a Lancefield group C Streptococcus zooepidemicus strain causing epidemic nephritis: new information about an old disease. PLoS One (2008) 1.49
Evolution of genome architecture. Int J Biochem Cell Biol (2008) 1.48
The entomopathogenic bacterial endosymbionts Xenorhabdus and Photorhabdus: convergent lifestyles from divergent genomes. PLoS One (2011) 1.47
Constraints and plasticity in genome and molecular-phenome evolution. Nat Rev Genet (2010) 1.41
Chromosome structuring limits genome plasticity in Escherichia coli. PLoS Genet (2007) 1.40
Co-orientation of replication and transcription preserves genome integrity. PLoS Genet (2010) 1.39
Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3. PLoS One (2008) 1.38
Efficient discrimination within a Corynebacterium diphtheriae epidemic clonal group by a novel macroarray-based method. J Clin Microbiol (2005) 1.38
Projector: automatic contig mapping for gap closure purposes. Nucleic Acids Res (2003) 1.38
Selection for chromosome architecture in bacteria. J Mol Evol (2006) 1.36
Genome-wide detection of chromosomal rearrangements, indels, and mutations in circular chromosomes by short read sequencing. Genome Res (2011) 1.34
Clostridium botulinum group III: a group with dual identity shaped by plasmids, phages and mobile elements. BMC Genomics (2011) 1.34
Conservation in the face of diversity: multistrain analysis of an intracellular bacterium. BMC Genomics (2009) 1.34
Chromosomal periodicity of evolutionarily conserved gene pairs. Proc Natl Acad Sci U S A (2007) 1.30
Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content. BMC Genomics (2009) 1.29
Mycobacterium tuberculosis--heterogeneity revealed through whole genome sequencing. Tuberculosis (Edinb) (2012) 1.17
Diversity of genome structure in Salmonella enterica serovar Typhi populations. J Bacteriol (2005) 1.15
Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli. MBio (2014) 1.14
Comparative analysis of the complete plastid genome sequence of the red alga Gracilaria tenuistipitata var. liui provides insights into the evolution of rhodoplasts and their relationship to other plastids. J Mol Evol (2004) 1.13
Comparison of genome structures of vibrios, bacteria possessing two chromosomes. J Bacteriol (2002) 1.05
SIS: a program to generate draft genome sequence scaffolds for prokaryotes. BMC Bioinformatics (2012) 1.04
Comparative genomics and proteomics of Helicobacter mustelae, an ulcerogenic and carcinogenic gastric pathogen. BMC Genomics (2010) 1.02
Inversions over the terminus region in Salmonella and Escherichia coli: IS200s as the sites of homologous recombination inverting the chromosome of Salmonella enterica serovar typhi. J Bacteriol (2002) 1.00
Flip-flop around the origin and terminus of replication in prokaryotic genomes. Genome Biol (2001) 0.98
Conditions for the evolution of gene clusters in bacterial genomes. PLoS Comput Biol (2010) 0.98
The whole genome sequence of Sphingobium chlorophenolicum L-1: insights into the evolution of the pentachlorophenol degradation pathway. Genome Biol Evol (2011) 0.98
Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis. BMC Genomics (2011) 0.98
DNA motifs that sculpt the bacterial chromosome. Nat Rev Microbiol (2011) 0.97
An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics. BMC Genomics (2011) 0.96
High Incidence of Invasive Group A Streptococcus Disease Caused by Strains of Uncommon emm Types in Thunder Bay, Ontario, Canada. J Clin Microbiol (2015) 0.95
Gut symbionts from distinct hosts exhibit genotoxic activity via divergent colibactin biosynthesis pathways. Appl Environ Microbiol (2015) 0.94
Genome-level homology and phylogeny of Shewanella (Gammaproteobacteria: lteromonadales: Shewanellaceae). BMC Genomics (2011) 0.92
Comparative analysis of physical maps of four Bacillus subtilis (natto) genomes. Appl Environ Microbiol (2004) 0.90
Group-theoretic models of the inversion process in bacterial genomes. J Math Biol (2013) 0.88
Evolutionary constraints on codon and amino acid usage in two strains of human pathogenic actinobacteria Tropheryma whipplei. J Mol Evol (2006) 0.88
New implications on genomic adaptation derived from the Helicobacter pylori genome comparison. PLoS One (2011) 0.86
Markedly different genome arrangements between serotype a strains and serotypes b or c strains of Aggregatibacter actinomycetemcomitans. BMC Genomics (2010) 0.86
Genometrics as an essential tool for the assembly of whole genome sequences: the example of the chromosome of Bifidobacterium longum NCC2705. BMC Microbiol (2005) 0.83
Azotobacter Genomes: The Genome of Azotobacter chroococcum NCIMB 8003 (ATCC 4412). PLoS One (2015) 0.82
Changes in transcriptional orientation are associated with increases in evolutionary rates of enterobacterial genes. BMC Bioinformatics (2011) 0.82
Flexibility and symmetry of prokaryotic genome rearrangement reveal lineage-associated core-gene-defined genome organizational frameworks. MBio (2014) 0.82
An algebraic view of bacterial genome evolution. J Math Biol (2013) 0.82
Pangenome Analysis of Burkholderia pseudomallei: Genome Evolution Preserves Gene Order despite High Recombination Rates. PLoS One (2015) 0.81
Genomic characterization of the Taylorella genus. PLoS One (2012) 0.81
Gene-interleaving patterns of synteny in the Saccharomyces cerevisiae genome: are they proof of an ancient genome duplication event? Biol Direct (2007) 0.81
Evolvability of an Optimal Recombination Rate. Genome Biol Evol (2015) 0.80
Population Structure and Antimicrobial Resistance Profiles of Streptococcus suis Serotype 2 Sequence Type 25 Strains. PLoS One (2016) 0.80
MAX, a novel retrotransposon of the BEL-Pao family, is nested within the Bari1 cluster at the heterochromatic h39 region of chromosome 2 in Drosophila melanogaster. Mol Genet Genomics (2003) 0.80
Structural and functional analysis of the finished genome of the recently isolated toxic Anabaena sp. WA102. BMC Genomics (2016) 0.78
The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement. J Bacteriol (2017) 0.78
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