Published in PLoS One on June 29, 2011
Chromosome painting in silico in a bacterial species reveals fine population structure. Mol Biol Evol (2013) 1.05
Mitogenomic Meta-Analysis Identifies Two Phases of Migration in the History of Eastern Eurasian Sheep. Mol Biol Evol (2015) 0.84
Ancient mitochondrial genome reveals trace of prehistoric migration in the east Pamir by pastoralists. J Hum Genet (2015) 0.75
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res (1997) 175.36
BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol (2007) 74.13
Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol (1992) 22.61
Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol (2005) 18.57
Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet (1999) 18.22
Mitochondrial genome variation and the origin of modern humans. Nature (2000) 11.92
Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat (2009) 9.66
Rise and fall of the Beringian steppe bison. Science (2004) 7.91
Genetic traces of ancient demography. Proc Natl Acad Sci U S A (1998) 5.48
The role of selection in the evolution of human mitochondrial genomes. Genetics (2005) 4.56
Y chromosomal DNA variation and the peopling of Japan. Am J Hum Genet (1995) 4.50
Mismatch distributions of mtDNA reveal recent human population expansions. Hum Biol (1994) 4.39
Bayesian inference of population size history from multiple loci. BMC Evol Biol (2008) 4.23
Mitochondrial genome variation in eastern Asia and the peopling of Japan. Genome Res (2004) 3.34
Japanese population structure, based on SNP genotypes from 7003 individuals compared to other ethnic groups: effects on population-based association studies. Am J Hum Genet (2008) 3.12
On the number of New World founders: a population genetic portrait of the peopling of the Americas. PLoS Biol (2005) 2.72
mtDNA variation predicts population size in humans and reveals a major Southern Asian chapter in human prehistory. Mol Biol Evol (2007) 2.67
Accuracy of coalescent likelihood estimates: do we need more sites, more sequences, or more loci? Mol Biol Evol (2005) 2.64
The emerging limbs and twigs of the East Asian mtDNA tree. Mol Biol Evol (2002) 2.48
A three-stage colonization model for the peopling of the Americas. PLoS One (2008) 2.40
Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes. J Hum Genet (2005) 2.19
Mitochondrial population genomics supports a single pre-Clovis origin with a coastal route for the peopling of the Americas. Am J Hum Genet (2008) 2.13
mtDNA polymorphism in East Asian Populations, with special reference to the peopling of Japan. Am J Hum Genet (1996) 1.88
Evaluating the mitochondrial timescale of human evolution. Trends Ecol Evol (2009) 1.59
Validation of microarray-based resequencing of 93 worldwide mitochondrial genomes. Hum Mutat (2009) 1.57
High-throughput sequencing of complete human mtDNA genomes from the Philippines. Genome Res (2010) 1.56
MitoTool: a web server for the analysis and retrieval of human mitochondrial DNA sequence variations. Mitochondrion (2010) 1.54
Updated three-stage model for the peopling of the Americas. PLoS One (2008) 1.45
A Bayesian evaluation of human mitochondrial substitution rates. Am J Hum Genet (2008) 1.38
mtDNA data mining in GenBank needs surveying. Am J Hum Genet (2009) 1.36
Bayesian coalescent inference of major human mitochondrial DNA haplogroup expansions in Africa. Proc Biol Sci (2009) 1.31
The crucial role of calibration in molecular date estimates for the peopling of the Americas. Am J Hum Genet (2008) 1.28
Mitochondrial DNA haplogroup D4a is a marker for extreme longevity in Japan. PLoS One (2008) 1.26
Genetic origins of the Japanese: a partial support for the dual structure hypothesis. Am J Phys Anthropol (1997) 1.22
A genetic study of 2,000-year-old human remains from Japan using mitochondrial DNA sequences. Am J Phys Anthropol (1995) 1.20
A reevaluation of the Native American mtDNA genome diversity and its bearing on the models of early colonization of Beringia. PLoS One (2008) 1.18
Mitochondrial DNA polymorphisms in Yunnan nationalities in China. J Hum Genet (2001) 1.10
Population expansion in the North African late Pleistocene signalled by mitochondrial DNA haplogroup U6. BMC Evol Biol (2010) 1.08
Distilling artificial recombinants from large sets of complete mtDNA genomes. PLoS One (2008) 1.04
The earliest settlers' antiquity and evolutionary history of Indian populations: evidence from M2 mtDNA lineage. BMC Evol Biol (2008) 1.03
Analysis of mitochondrial DNA variants in Japanese patients with schizophrenia. Mitochondrion (2009) 0.93
Revisiting the peopling of Japan: an admixture perspective. J Hum Genet (2009) 0.90
Mitochondrial DNA sequence analysis of patients with 'atypical psychosis'. Psychiatry Clin Neurosci (2005) 0.87
Phylogenetic classification of Japanese mtDNA assisted by complete mitochondrial DNA sequences. Int J Legal Med (2008) 0.83
Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication. Nature (2010) 4.64
mtDNA data indicate a single origin for dogs south of Yangtze River, less than 16,300 years ago, from numerous wolves. Mol Biol Evol (2009) 3.23
Phylogeographic differentiation of mitochondrial DNA in Han Chinese. Am J Hum Genet (2002) 2.95
Multiple maternal origins of chickens: out of the Asian jungles. Mol Phylogenet Evol (2005) 2.94
Updating the East Asian mtDNA phylogeny: a prerequisite for the identification of pathogenic mutations. Hum Mol Genet (2006) 2.89
Phylogeny of mitochondrial DNA macrohaplogroup N in India, based on complete sequencing: implications for the peopling of South Asia. Am J Hum Genet (2004) 2.73
Evidence of positive selection acting at the human dopamine receptor D4 gene locus. Proc Natl Acad Sci U S A (2001) 2.48
Population variation revealed high-altitude adaptation of Tibetan mastiffs. Mol Biol Evol (2014) 2.32
Phylogeny of east Asian mitochondrial DNA lineages inferred from complete sequences. Am J Hum Genet (2003) 2.26
Revealing the history of sheep domestication using retrovirus integrations. Science (2009) 2.12
Different matrilineal contributions to genetic structure of ethnic groups in the silk road region in china. Mol Biol Evol (2004) 2.07
The dazzling array of basal branches in the mtDNA macrohaplogroup M from India as inferred from complete genomes. Mol Biol Evol (2005) 2.03
Adaptive diversification of bitter taste receptor genes in Mammalian evolution. Mol Biol Evol (2003) 1.82
A paradigm for virus-host coevolution: sequential counter-adaptations between endogenous and exogenous retroviruses. PLoS Pathog (2007) 1.79
Spiny frogs (Paini) illuminate the history of the Himalayan region and Southeast Asia. Proc Natl Acad Sci U S A (2010) 1.73
Mitochondrial genome evidence reveals successful Late Paleolithic settlement on the Tibetan Plateau. Proc Natl Acad Sci U S A (2009) 1.67
Genetic relationship of Chinese ethnic populations revealed by mtDNA sequence diversity. Am J Phys Anthropol (2002) 1.55
Y-chromosome haplogroup diversity in the sub-Himalayan Terai and Duars populations of East India. J Hum Genet (2011) 1.53
Genetic polymorphism of aldehyde dehydrogenase 2 (ALDH2) in a Chinese population: gender, age, culture, and genotypes of ALDH2. Biochem Genet (2005) 1.51
De novo origin of human protein-coding genes. PLoS Genet (2011) 1.48
Composition and evolution of the V2r vomeronasal receptor gene repertoire in mice and rats. Genomics (2005) 1.47
Reconstructing the evolutionary history of China: a caveat about inferences drawn from ancient DNA. Mol Biol Evol (2003) 1.40
Tissue sampling methods and standards for vertebrate genomics. Gigascience (2012) 1.39
Adaptive evolution of energy metabolism genes and the origin of flight in bats. Proc Natl Acad Sci U S A (2010) 1.35
Large-scale mtDNA screening reveals a surprising matrilineal complexity in east Asia and its implications to the peopling of the region. Mol Biol Evol (2010) 1.29
Mitochondrial DNA haplogroups M7b1'2 and M8a affect clinical expression of leber hereditary optic neuropathy in Chinese families with the m.11778G-->a mutation. Am J Hum Genet (2008) 1.29
Pleistocene isolation in the Northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelon haematocheilus (Temminck & Schlegel, 1845). Mol Ecol (2007) 1.27
Mitochondrial DNA sequence polymorphisms of five ethnic populations from northern China. Hum Genet (2003) 1.24
Low "penetrance" of phylogenetic knowledge in mitochondrial disease studies. Biochem Biophys Res Commun (2005) 1.23
Draft genome sequence of the Tibetan antelope. Nat Commun (2013) 1.22
Population phylogenomic analysis of mitochondrial DNA in wild boars and domestic pigs revealed multiple domestication events in East Asia. Genome Biol (2007) 1.21
Mitochondrial diversity and phylogeographic structure of Chinese domestic goats. Mol Phylogenet Evol (2005) 1.20
Comment on "Reconstructing the origin of Andaman islanders". Science (2006) 1.19
Universal COI primers for DNA barcoding amphibians. Mol Ecol Resour (2011) 1.19
The origin and genetic diversity of Chinese native chicken breeds. Biochem Genet (2002) 1.14
Origin, genetic diversity, and population structure of Chinese domestic sheep. Gene (2006) 1.12
Analysis of complete mitochondrial genome sequences increases phylogenetic resolution of bears (Ursidae), a mammalian family that experienced rapid speciation. BMC Evol Biol (2007) 1.12
Molecular phylogeny and biogeography of Oriental voles: genus Eothenomys (Muridae, Mammalia). Mol Phylogenet Evol (2004) 1.10
Tracing the Austronesian footprint in Mainland Southeast Asia: a perspective from mitochondrial DNA. Mol Biol Evol (2010) 1.10
Parallel evolution of auditory genes for echolocation in bats and toothed whales. PLoS Genet (2012) 1.10
Molecular evolution of the keratin associated protein gene family in mammals, role in the evolution of mammalian hair. BMC Evol Biol (2008) 1.09
New insights to the molecular phylogenetics and generic assessment in the Rhacophoridae (Amphibia: Anura) based on five nuclear and three mitochondrial genes, with comments on the evolution of reproduction. Mol Phylogenet Evol (2009) 1.07
The role of climate in human mitochondrial DNA evolution: a reappraisal. Genomics (2006) 1.06
Highly variable recessive lethal or nearly lethal mutation rates during germ-line development of male Drosophila melanogaster. Proc Natl Acad Sci U S A (2011) 1.05
Diversification of rhacophorid frogs provides evidence for accelerated faunal exchange between India and Eurasia during the Oligocene. Proc Natl Acad Sci U S A (2013) 1.05
Evolution and biogeography of talpid moles from continental East Asia and the Japanese islands inferred from mitochondrial and nuclear gene sequences. Zoolog Sci (2004) 1.04
Phylogenetic incongruence between nuclear and mitochondrial markers in the Asian colobines and the evolution of the langurs and leaf monkeys. Mol Phylogenet Evol (2007) 1.04
Relaxation of selective constraints on avian mitochondrial DNA following the degeneration of flight ability. Genome Res (2009) 1.04
Genotyping of TRIM5 locus in northern pig-tailed macaques (Macaca leonina), a primate species susceptible to Human Immunodeficiency Virus type 1 infection. Retrovirology (2009) 1.03
Mitochondrial DNA 5178A polymorphism and longevity. Hum Genet (2002) 1.02
Interference competition and high temperatures reduce the virulence of fig wasps and stabilize a fig-wasp mutualism. PLoS One (2009) 1.02
Mitochondrial data support an odd-nosed colobine clade. Mol Phylogenet Evol (2006) 1.01
Differential population structuring and demographic history of two closely related fish species, Japanese sea bass (Lateolabrax japonicus) and spotted sea bass (Lateolabrax maculatus) in Northwestern Pacific. Mol Phylogenet Evol (2006) 1.01
Phylogeographic analysis of mtDNA variation in four ethnic populations from Yunnan Province: new data and a reappraisal. J Hum Genet (2002) 1.01
Moderate mutation rate in the SARS coronavirus genome and its implications. BMC Evol Biol (2004) 1.00
Genealogy and palaeodrainage basins in Yunnan Province: phylogeography of the Yunnan spiny frog, Nanorana yunnanensis (Dicroglossidae). Mol Ecol (2010) 0.98
Perfusing chemotherapy by percutaneous lung puncture in the treatment of extensive drug resistant pulmonary tuberculosis. J Thorac Dis (2012) 0.98
Mitochondrial genomes of domestic animals need scrutiny. Mol Ecol (2014) 0.98
To trust or not to trust an idiosyncratic mitochondrial data set. Am J Hum Genet (2003) 0.97
Phylogeographic analysis of mitochondrial DNA haplogroup F2 in China reveals T12338C in the initiation codon of the ND5 gene not to be pathogenic. J Hum Genet (2004) 0.97
Stepwise loss of motilin and its specific receptor genes in rodents. J Mol Endocrinol (2009) 0.97
Strikingly different penetrance of LHON in two Chinese families with primary mutation G11778A is independent of mtDNA haplogroup background and secondary mutation G13708A. Mutat Res (2008) 0.96
Late Pleistocene divergence and subsequent population expansion of two closely related fish species, Japanese anchovy (Engraulis japonicus) and Australian anchovy (Engraulis australis). Mol Phylogenet Evol (2006) 0.96
Genome-wide scans for candidate genes involved in the aquatic adaptation of dolphins. Genome Biol Evol (2013) 0.95
Artificial selection on brain-expressed genes during the domestication of dog. Mol Biol Evol (2013) 0.95
Speciation in the Rana chensinensis species complex and its relationship to the uplift of the Qinghai-Tibetan Plateau. Mol Ecol (2012) 0.95
Phylogenetic utility of nuclear introns in interfamilial relationships of Caniformia (order Carnivora). Syst Biol (2011) 0.95
Phylogenetic relationships of the macaques (Cercopithecidae: Macaca), inferred from mitochondrial DNA sequences. Biochem Genet (2005) 0.94
Somatic mutations of mitochondrial genome in early stage breast cancer. Int J Cancer (2007) 0.94
The acquisition of an inheritable 50-bp deletion in the human mtDNA control region does not affect the mtDNA copy number in peripheral blood cells. Hum Mutat (2010) 0.94
Tracing the origins of Hakka and Chaoshanese by mitochondrial DNA analysis. Am J Phys Anthropol (2010) 0.93
Characterization of Sarcocystis species in domestic animals using a PCR-RFLP analysis of variation in the 18S rRNA gene: a cost-effective and simple technique for routine species identification. Exp Parasitol (2003) 0.93
The Drosophila obscura species-group (Diptera, Drosophilidae) from Yunnan Province, Southern China. Zoolog Sci (2003) 0.92
Patrilineal perspective on the Austronesian diffusion in Mainland Southeast Asia. PLoS One (2012) 0.91
Molecular phylogeny of Sinocyclocheilus (Cypriniformes: Cyprinidae) inferred from mitochondrial DNA sequences. Mol Phylogenet Evol (2005) 0.91
Length polymorphism of thymidylate synthase regulatory region in Chinese populations and evolution of the novel alleles. Biochem Genet (2002) 0.91
A profound role for the expansion of trypsin-like serine protease family in the evolution of hematophagy in mosquito. Mol Biol Evol (2009) 0.91
A mitogenomic perspective on the ancient, rapid radiation in the Galliformes with an emphasis on the Phasianidae. BMC Evol Biol (2010) 0.91
Parallel and convergent evolution of the dim-light vision gene RH1 in bats (Order: Chiroptera). PLoS One (2010) 0.89
The effects of ERCC1 expression levels on the chemosensitivity of gastric cancer cells to platinum agents and survival in gastric cancer patients treated with oxaliplatin-based adjuvant chemotherapy. Oncol Lett (2012) 0.89
Localization of a novel gene for congenital nonsyndromic simple microphthalmia to chromosome 2q11-14. Hum Genet (2007) 0.88
Evolutionary history of the odd-nosed monkeys and the phylogenetic position of the newly described Myanmar snub-nosed monkey Rhinopithecus strykeri. PLoS One (2012) 0.88
Evolutionary implications of multiple SINE insertions in an intronic region from diverse mammals. Mamm Genome (2005) 0.88
Deciphering the signature of selective constraints on cancerous mitochondrial genome. Mol Biol Evol (2011) 0.88
Positive selection drives population differentiation in the skeletal genes in modern humans. Hum Mol Genet (2010) 0.88
Molecular characterization of six Chinese families with m.3460G>A and Leber hereditary optic neuropathy. Neurogenetics (2010) 0.87
Phylogenetic studies of pantherine cats (Felidae) based on multiple genes, with novel application of nuclear beta-fibrinogen intron 7 to carnivores. Mol Phylogenet Evol (2005) 0.87
A multi-locus phylogeny of Nectogalini shrews and influences of the paleoclimate on speciation and evolution. Mol Phylogenet Evol (2010) 0.87
Genetic diversity of the endemic gourmet mushroom Thelephora ganbajun from south-western China. Microbiology (2008) 0.86
Genetic diversity and population history of golden monkeys (Rhinopithecus roxellana). Genetics (2003) 0.86
A PCR-based RFLP analysis of Sarcocystis cruzi (Protozoa: Sarcocystidae) in Yunnan Province, PR China, reveals the water buffalo (Bubalus bubalis) as a natural intermediate host. J Parasitol (2002) 0.86
Evolution and function of de novo originated genes. Mol Phylogenet Evol (2013) 0.86
An estimation of Erinaceidae phylogeny: a combined analysis approach. PLoS One (2012) 0.85
Genetic polymorphisms of ERCC1‑118, XRCC1‑399 and GSTP1‑105 are associated with the clinical outcome of gastric cancer patients receiving oxaliplatin‑based adjuvant chemotherapy. Mol Med Rep (2013) 0.85
Origin and dispersal of atypical aldehyde dehydrogenase ALDH2487Lys. Gene (2009) 0.85
[Genetic differentiation of domestic goose breeds in China]. Yi Chuan Xue Bao (2005) 0.85
Relationship between COPD and polymorphisms of HOX-1 and mEPH in a Chinese population. Oncol Rep (2007) 0.85
Uncovering the profile of somatic mtDNA mutations in Chinese colorectal cancer patients. PLoS One (2011) 0.85
Evaluating the roles of energetic functional constraints on teleost mitochondrial-encoded protein evolution. Mol Biol Evol (2010) 0.85
Evolution of the DRD2 gene haplotype and its association with alcoholism in Mexican Americans. Alcohol (2005) 0.84