Published in Funct Integr Genomics on August 02, 2011
The wheat powdery mildew genome shows the unique evolution of an obligate biotroph. Nat Genet (2013) 1.38
Multiple Avirulence Loci and Allele-Specific Effector Recognition Control the Pm3 Race-Specific Resistance of Wheat to Powdery Mildew. Plant Cell (2015) 0.91
Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species. Nat Genet (2016) 0.91
Characterization and potential evolutionary impact of transposable elements in the genome of Cochliobolus heterostrophus. BMC Genomics (2014) 0.88
Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon. BMC Genomics (2015) 0.81
Annotation of a hybrid partial genome of the coffee rust (Hemileia vastatrix) contributes to the gene repertoire catalog of the Pucciniales. Front Plant Sci (2014) 0.78
MpSaci is a widespread gypsy-Ty3 retrotransposon highly represented by non-autonomous copies in the Moniliophthora perniciosa genome. Curr Genet (2015) 0.76
Avirulence Genes in Cereal Powdery Mildews: The Gene-for-Gene Hypothesis 2.0. Front Plant Sci (2016) 0.76
AvrPm2 encodes an RNase-like avirulence effector which is conserved in the two different specialized forms of wheat and rye powdery mildew fungus. New Phytol (2016) 0.75
Evidence of ectopic recombination and a repeat-induced point (RIP) mutation in the genome of Sclerotinia sclerotiorum, the agent responsible for white mold. Genet Mol Biol (2016) 0.75
Reverse transcriptase and intron number evolution. Stem Cell Investig (2014) 0.75
Low diversity, activity, and density of transposable elements in five avian genomes. Funct Integr Genomics (2017) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res (1998) 96.63
A unified classification system for eukaryotic transposable elements. Nat Rev Genet (2007) 11.03
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene (1995) 8.45
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature (2008) 5.42
FPC: a system for building contigs from restriction fingerprinted clones. Comput Appl Biosci (1997) 5.41
Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science (2010) 3.35
Eukaryotic genome size databases. Nucleic Acids Res (2006) 3.27
Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proc Natl Acad Sci U S A (2011) 2.84
De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis. PLoS Genet (2010) 2.77
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature (2010) 2.61
Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome. Science (2010) 2.55
GenoProfiler: batch processing of high-throughput capillary fingerprinting data. Bioinformatics (2006) 1.32
The powdery mildews: a review of the world's most familiar (yet poorly known) plant pathogens. Annu Rev Phytopathol (2008) 1.28
A large-insert (130 kbp) bacterial artificial chromosome library of the rice blast fungus Magnaporthe grisea: genome analysis, contig assembly, and gene cloning. Fungal Genet Biol (1997) 1.14
An integrated BAC and genome sequence physical map of Phytophthora sojae. Mol Plant Microbe Interact (2006) 1.01
Multilocus phylogenetic analyses within Blumeria graminis, a powdery mildew fungus of cereals. Mol Phylogenet Evol (2007) 0.93
Comparative sequence analysis of wheat and barley powdery mildew fungi reveals gene colinearity, dates divergence and indicates host-pathogen co-evolution. Fungal Genet Biol (2010) 0.90
Intragenic allele pyramiding combines different specificities of wheat Pm3 resistance alleles. Plant J (2010) 0.87
SINE-like properties of a highly repetitive element in the genome of the obligate parasitic fungus Erysiphe graminis f.sp. hordei. Mol Gen Genet (1993) 0.83
Automated FingerPrint Background removal: FPB. BMC Bioinformatics (2009) 0.82
Characterization of the transcript of a new class of retroposon-type repetitive element cloned from the powdery mildew fungus, Erysiphe graminis. Mol Gen Genet (1996) 0.81
A Blumeria graminisf.sp. hordei BAC library--contig building and microsynteny studies. Curr Genet (2002) 0.77
Bacterial artificial chromosome-based physical map of Gibberella zeae (Fusarium graminearum). Genome (2007) 0.76
Molecular cloning of bacterial DNA in vivo using a transposable R6K ori and a P1vir phage. J Bacteriol (1994) 0.75
A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1. Nat Genet (2006) 15.14
The Sorghum bicolor genome and the diversification of grasses. Nature (2009) 14.62
A physical, genetic and functional sequence assembly of the barley genome. Nature (2012) 7.25
The DNA sequence of the human X chromosome. Nature (2005) 6.97
454 sequencing put to the test using the complex genome of barley. BMC Genomics (2006) 6.12
Nuclear activity of MLA immune receptors links isolate-specific and basal disease-resistance responses. Science (2006) 4.42
Sarcoidosis is associated with a truncating splice site mutation in BTNL2. Nat Genet (2005) 4.23
A putative ABC transporter confers durable resistance to multiple fungal pathogens in wheat. Science (2009) 3.85
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature (2012) 3.53
Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature (2013) 3.40
Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science (2010) 3.35
Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell (2011) 3.03
Sequence and analysis of chromosome 2 of Dictyostelium discoideum. Nature (2002) 3.01
Antitumor polyketide biosynthesis by an uncultivated bacterial symbiont of the marine sponge Theonella swinhoei. Proc Natl Acad Sci U S A (2004) 3.01
SNP and haplotype mapping for genetic analysis in the rat. Nat Genet (2008) 2.96
Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. Proc Natl Acad Sci U S A (2007) 2.82
Rapid genome divergence at orthologous low molecular weight glutenin loci of the A and Am genomes of wheat. Plant Cell (2003) 2.58
Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell (2010) 2.45
Impaired insulin/IGF1 signaling extends life span by promoting mitochondrial L-proline catabolism to induce a transient ROS signal. Cell Metab (2012) 2.43
Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity. Nat Genet (2004) 2.41
Exploiting the mosaic structure of trans-acyltransferase polyketide synthases for natural product discovery and pathway dissection. Nat Biotechnol (2008) 2.35
Melanocortin-4 receptor gene variant I103 is negatively associated with obesity. Am J Hum Genet (2004) 2.17
Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell (2011) 1.98
Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation. Plant J (2007) 1.96
A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium. Genetics (2004) 1.94
DNA sequence and analysis of human chromosome 8. Nature (2006) 1.91
Genome analysis at different ploidy levels allows cloning of the powdery mildew resistance gene Pm3b from hexaploid wheat. Plant J (2004) 1.90
Comparative genomics in the grass family: molecular characterization of grass genome structure and evolution. Ann Bot (2002) 1.87
The Arabidopsis male-sterile mutant dde2-2 is defective in the ALLENE OXIDE SYNTHASE gene encoding one of the key enzymes of the jasmonic acid biosynthesis pathway. Planta (2002) 1.86
The tomato fer gene encoding a bHLH protein controls iron-uptake responses in roots. Proc Natl Acad Sci U S A (2002) 1.85
Map-based isolation of the leaf rust disease resistance gene Lr10 from the hexaploid wheat (Triticum aestivum L.) genome. Proc Natl Acad Sci U S A (2003) 1.85
Prevalence, spectrum, and functional characterization of melanocortin-4 receptor gene mutations in a representative population-based sample and obese adults from Germany. J Clin Endocrinol Metab (2006) 1.80
Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families. Genome Res (2007) 1.78
Polyketide assembly lines of uncultivated sponge symbionts from structure-based gene targeting. Nat Chem Biol (2009) 1.75
Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting. Genome Res (2012) 1.73
A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. Proc Natl Acad Sci U S A (2013) 1.70
Ancestral genome duplication in rice. Genome (2004) 1.66
A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley. Plant J (2009) 1.63
De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley. BMC Genomics (2009) 1.61
Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content. Plant J (2011) 1.60
Systematic association mapping identifies NELL1 as a novel IBD disease gene. PLoS One (2007) 1.57
Gene content and virtual gene order of barley chromosome 1H. Plant Physiol (2009) 1.53
Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication. Genome Res (2011) 1.53
Genetic and functional identification of the likely causative variant for cholesterol gallstone disease at the ABCG5/8 lithogenic locus. Hepatology (2013) 1.53
Highly parallel gene-to-BAC addressing using microarrays. Biotechniques (2011) 1.52
Widespread and subtle: alternative splicing at short-distance tandem sites. Trends Genet (2008) 1.49
Comparative genome analysis: selection pressure on the Borrelia vls cassettes is essential for infectivity. BMC Genomics (2006) 1.47
CACTA transposons in Triticeae. A diverse family of high-copy repetitive elements. Plant Physiol (2003) 1.43
The wheat powdery mildew genome shows the unique evolution of an obligate biotroph. Nat Genet (2013) 1.38
Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage. Proc Natl Acad Sci U S A (2009) 1.38
A short isoform of NOD2/CARD15, NOD2-S, is an endogenous inhibitor of NOD2/receptor-interacting protein kinase 2-induced signaling pathways. Proc Natl Acad Sci U S A (2006) 1.37
A poke into the diversity and associations within human anterior nare microbial communities. ISME J (2010) 1.37
Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences. Proc Natl Acad Sci U S A (2012) 1.37
Patching gaps in plant genomes results in gene movement and erosion of colinearity. Genome Res (2010) 1.36
Transgene x environment interactions in genetically modified wheat. PLoS One (2010) 1.36
From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.). BMC Plant Biol (2011) 1.35
Comparative and functional genomics provide insights into the pathogenicity of dermatophytic fungi. Genome Biol (2011) 1.34
Polymorphic segmental duplications at 8p23.1 challenge the determination of individual defensin gene repertoires and the assembly of a contiguous human reference sequence. BMC Genomics (2004) 1.32
Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat. Plant J (2004) 1.31
Single-nucleotide polymorphisms in NAGNAG acceptors are highly predictive for variations of alternative splicing. Am J Hum Genet (2005) 1.29
Mapping human genetic ancestry. Mol Biol Evol (2007) 1.28
ACTIN2 is essential for bulge site selection and tip growth during root hair development of Arabidopsis. Plant Physiol (2002) 1.28
Exploring the chemistry of uncultivated bacterial symbionts: antitumor polyketides of the pederin family. J Nat Prod (2005) 1.28
Diversity at the Mla powdery mildew resistance locus from cultivated barley reveals sites of positive selection. Mol Plant Microbe Interact (2010) 1.27
Unprecedented diversity of catalytic domains in the first four modules of the putative pederin polyketide synthase. Chembiochem (2004) 1.27
Technology-specific error signatures in the 1000 Genomes Project data. Hum Genet (2011) 1.27
Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. Plant J (2013) 1.26
High-resolution mapping of the 8p23.1 beta-defensin cluster reveals strictly concordant copy number variation of all genes. Hum Mutat (2008) 1.25
Whole-genome comparison of leucine-rich repeat extensins in Arabidopsis and rice. A conserved family of cell wall proteins form a vegetative and a reproductive clade. Plant Physiol (2003) 1.24
Leaf rust resistance gene Lr1, isolated from bread wheat (Triticum aestivum L.) is a member of the large psr567 gene family. Plant Mol Biol (2007) 1.24