Published in Nature on March 06, 2008
The genome portal of the Department of Energy Joint Genome Institute. Nucleic Acids Res (2011) 3.26
Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proc Natl Acad Sci U S A (2011) 2.84
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. PLoS Pathog (2012) 2.66
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature (2010) 2.61
MycoCosm portal: gearing up for 1000 fungal genomes. Nucleic Acids Res (2013) 2.60
Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis. PLoS Genet (2011) 2.58
Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome. Science (2010) 2.55
Mechanisms underlying beneficial plant-fungus interactions in mycorrhizal symbiosis. Nat Commun (2010) 2.50
The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell (2010) 2.47
Genome sequence of the model mushroom Schizophyllum commune. Nat Biotechnol (2010) 2.44
Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Proc Natl Acad Sci U S A (2010) 2.30
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biol (2011) 2.17
Trichoderma: the genomics of opportunistic success. Nat Rev Microbiol (2011) 2.17
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis. Proc Natl Acad Sci U S A (2013) 1.94
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. Proc Natl Acad Sci U S A (2012) 1.74
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi. Proc Natl Acad Sci U S A (2014) 1.70
Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes. Proc Natl Acad Sci U S A (2014) 1.67
Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi. BMC Genomics (2013) 1.62
Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina). PLoS Genet (2014) 1.61
Fungal secretome database: integrated platform for annotation of fungal secretomes. BMC Genomics (2010) 1.55
Genomic perspectives on the evolution of fungal entomopathogenicity in Beauveria bassiana. Sci Rep (2012) 1.54
Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica. PLoS Pathog (2011) 1.52
Fungal cytochrome P450 database. BMC Genomics (2008) 1.48
Next-generation annotation of prokaryotic genomes with EuGene-P: application to Sinorhizobium meliloti 2011. DNA Res (2013) 1.48
Genome characterization of the oleaginous fungus Mortierella alpina. PLoS One (2011) 1.43
Metatranscriptomic Study of Common and Host-Specific Patterns of Gene Expression between Pines and Their Symbiotic Ectomycorrhizal Fungi in the Genus Suillus. PLoS Genet (2016) 1.38
Basidiomycete mating type genes and pheromone signaling. Eukaryot Cell (2010) 1.37
Upgrading root physiology for stress tolerance by ectomycorrhizas: insights from metabolite and transcriptional profiling into reprogramming for stress anticipation. Plant Physiol (2009) 1.37
The ectomycorrhizal fungus Laccaria bicolor stimulates lateral root formation in poplar and Arabidopsis through auxin transport and signaling. Plant Physiol (2009) 1.30
High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus. Nat Commun (2013) 1.28
Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi. Proc Natl Acad Sci U S A (2010) 1.23
Diversity of sesquiterpene synthases in the basidiomycete Coprinus cinereus. Mol Microbiol (2009) 1.22
Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus. PLoS Genet (2014) 1.21
Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize. BMC Genomics (2012) 1.14
Correction: Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi. BMC Genomics (2014) 1.13
Mitogen-activated protein kinase signaling in plant-interacting fungi: distinct messages from conserved messengers. Plant Cell (2012) 1.11
The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown-rot mechanism involving Fenton chemistry. Environ Microbiol (2012) 1.11
A consistent phylogenetic backbone for the fungi. Mol Biol Evol (2011) 1.11
Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level. BMC Genomics (2011) 1.10
Curation of characterized glycoside hydrolases of fungal origin. Database (Oxford) (2011) 1.09
Whole genome and global gene expression analyses of the model mushroom Flammulina velutipes reveal a high capacity for lignocellulose degradation. PLoS One (2014) 1.08
Orchestration of sexual reproduction and virulence by the fungal mating-type locus. Curr Opin Microbiol (2008) 1.08
Leaf-cutting ant fungi produce cell wall degrading pectinase complexes reminiscent of phytopathogenic fungi. BMC Biol (2010) 1.07
The genome of Ganoderma lucidum provides insights into triterpenes biosynthesis and wood degradation [corrected]. PLoS One (2012) 1.05
Inter-kingdom encounters: recent advances in molecular bacterium-fungus interactions. Curr Genet (2009) 1.03
Sequencing and comparative analysis of the straw mushroom (Volvariella volvacea) genome. PLoS One (2013) 1.03
Survey and analysis of simple sequence repeats in the Laccaria bicolor genome, with development of microsatellite markers. Curr Genet (2010) 1.02
Deep insight into the Ganoderma lucidum by comprehensive analysis of its transcriptome. PLoS One (2012) 1.01
Biotrophic transportome in mutualistic plant-fungal interactions. Mycorrhiza (2013) 1.00
LTR retrotransposons in fungi. PLoS One (2011) 1.00
Comparative analysis of secreted protein evolution using expressed sequence tags from four poplar leaf rusts (Melampsora spp.). BMC Genomics (2010) 1.00
Genomic and proteomic dissection of the ubiquitous plant pathogen, Armillaria mellea: toward a new infection model system. J Proteome Res (2013) 1.00
Novel traits of Trichoderma predicted through the analysis of its secretome. FEMS Microbiol Lett (2012) 0.99
Carbon availability triggers the decomposition of plant litter and assimilation of nitrogen by an ectomycorrhizal fungus. ISME J (2013) 0.99
Characterization of transposable elements in the ectomycorrhizal fungus Laccaria bicolor. PLoS One (2012) 0.99
Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens. BMC Genomics (2015) 0.98
Structure and expression profile of the phosphate Pht1 transporter gene family in mycorrhizal Populus trichocarpa. Plant Physiol (2011) 0.98
The solute carrier families have a remarkably long evolutionary history with the majority of the human families present before divergence of Bilaterian species. Mol Biol Evol (2010) 0.97
Genome-wide transcriptome and proteome analysis on different developmental stages of Cordyceps militaris. PLoS One (2012) 0.97
Plant-polysaccharide-degrading enzymes from Basidiomycetes. Microbiol Mol Biol Rev (2014) 0.97
Ectomycorrhizal fungi contribute to soil organic matter cycling in sub-boreal forests. ISME J (2013) 0.95
Volatile signalling by sesquiterpenes from ectomycorrhizal fungi reprogrammes root architecture. Nat Commun (2015) 0.94
The irreversible loss of a decomposition pathway marks the single origin of an ectomycorrhizal symbiosis. PLoS One (2012) 0.93
Mycorrhiza reduces adverse effects of dark septate endophytes (DSE) on growth of conifers. PLoS One (2012) 0.93
The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution. PLoS Genet (2013) 0.93
Effect of poplar genotypes on mycorrhizal infection and secreted enzyme activities in mycorrhizal and non-mycorrhizal roots. J Exp Bot (2010) 0.93
The molecular components of the extracellular protein-degradation pathways of the ectomycorrhizal fungus Paxillus involutus. New Phytol (2013) 0.93
SNUGB: a versatile genome browser supporting comparative and functional fungal genomics. BMC Genomics (2008) 0.92
Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication. Curr Biol (2016) 0.92
Using deep RNA sequencing for the structural annotation of the Laccaria bicolor mycorrhizal transcriptome. PLoS One (2010) 0.92
Mycorrhizal hyphae as ecological niche for highly specialized hypersymbionts - or just soil free-riders? Front Plant Sci (2013) 0.91
Genes acquired by horizontal transfer are potentially involved in the evolution of phytopathogenicity in Moniliophthora perniciosa and Moniliophthora roreri, two of the major pathogens of cacao. J Mol Evol (2009) 0.91
A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome. Funct Integr Genomics (2011) 0.90
Self-assembly at air/water interfaces and carbohydrate binding properties of the small secreted protein EPL1 from the fungus Trichoderma atroviride. J Biol Chem (2012) 0.90
Microbe-independent entry of oomycete RxLR effectors and fungal RxLR-like effectors into plant and animal cells is specific and reproducible. Mol Plant Microbe Interact (2013) 0.90
Effector candidates in the secretome of Piriformospora indica, a ubiquitous plant-associated fungus. Front Plant Sci (2013) 0.89
Oxalate efflux transporter from the brown rot fungus Fomitopsis palustris. Appl Environ Microbiol (2010) 0.89
Does forest liming impact the enzymatic profiles of ectomycorrhizal communities through specialized fungal symbionts? Mycorrhiza (2009) 0.89
pHg/pSILBAγ vector system for efficient gene silencing in homobasidiomycetes: optimization of ihpRNA - triggering in the mycorrhizal fungus Laccaria bicolor. Microb Biotechnol (2009) 0.89
Methylated glycans as conserved targets of animal and fungal innate defense. Proc Natl Acad Sci U S A (2014) 0.88
Characterization and potential evolutionary impact of transposable elements in the genome of Cochliobolus heterostrophus. BMC Genomics (2014) 0.88
Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome. BMC Syst Biol (2011) 0.88
Cell wall remodeling in mycorrhizal symbiosis: a way towards biotrophism. Front Plant Sci (2014) 0.87
Interactions of beneficial and detrimental root-colonizing filamentous microbes with plant hosts. Genome Biol (2013) 0.87
Abundant degenerate miniature inverted-repeat transposable elements in genomes of epichloid fungal endophytes of grasses. Genome Biol Evol (2011) 0.87
Diversity and variability of NOD-like receptors in fungi. Genome Biol Evol (2014) 0.87
Composition and expression of genes encoding carbohydrate-active enzymes in the straw-degrading mushroom Volvariella volvacea. PLoS One (2013) 0.86
Transcriptome and proteome exploration to provide a resource for the study of Agrocybe aegerita. PLoS One (2013) 0.86
A single mating-type locus composed of homeodomain genes promotes nuclear migration and heterokaryosis in the white-rot fungus Phanerochaete chrysosporium. Eukaryot Cell (2010) 0.86
Integration of molecular functions at the ecosystemic level: breakthroughs and future goals of environmental genomics and post-genomics. Ecol Lett (2010) 0.86
Several genes encoding enzymes with the same activity are necessary for aerobic fungal degradation of cellulose in nature. PLoS One (2014) 0.86
Comparative transcriptomics of the model mushroom Coprinopsis cinerea reveals tissue-specific armories and a conserved circuitry for sexual development. BMC Genomics (2014) 0.86
Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors. New Phytol (2015) 0.86
Oak root response to ectomycorrhizal symbiosis establishment: RNA-Seq derived transcript identification and expression profiling. PLoS One (2014) 0.86
5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea. BMC Genomics (2013) 0.85
The ectomycorrhizal fungus Tricholoma matsutake is a facultative saprotroph in vitro. Mycorrhiza (2011) 0.85
The good, the bad and the tasty: The many roles of mushrooms. Stud Mycol (2016) 0.85
Comparative analysis of fungal protein kinases and associated domains. BMC Genomics (2010) 0.85
Prevalence of transcription factors in ascomycete and basidiomycete fungi. BMC Genomics (2014) 0.85
Specificity of plant-microbe interactions in the tree mycorrhizosphere biome and consequences for soil C cycling. Front Microbiol (2014) 0.84
Initial sequencing and analysis of the human genome. Nature (2001) 212.86
The genome sequence of Drosophila melanogaster. Science (2000) 74.32
Comparative genomics of the eukaryotes. Science (2000) 26.62
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science (2006) 21.03
Multiclass cancer diagnosis using tumor gene expression signatures. Proc Natl Acad Sci U S A (2001) 19.30
Vascular dementia: diagnostic criteria for research studies. Report of the NINDS-AIREN International Workshop. Neurology (1993) 16.92
Centre d'etude du polymorphisme humain (CEPH): collaborative genetic mapping of the human genome. Genomics (1990) 13.23
A physical map of the human genome. Nature (2001) 12.39
Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res (1990) 11.22
Compilation of small ribosomal subunit RNA structures. Nucleic Acids Res (1993) 11.07
Comparative genomics of the lactic acid bacteria. Proc Natl Acad Sci U S A (2006) 10.24
Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res (1992) 8.51
Genomics. Genome project standards in a new era of sequencing. Science (2009) 7.72
Gene fusion with an ETS DNA-binding domain caused by chromosome translocation in human tumours. Nature (1992) 7.68
The European Large Subunit Ribosomal RNA Database. Nucleic Acids Res (2001) 7.61
The HIV 'A' (sor) gene product is essential for virus infectivity. Nature (1987) 7.51
Updating the sequence-based classification of glycosyl hydrolases. Biochem J (1996) 7.49
Domains in microbial beta-1, 4-glycanases: sequence conservation, function, and enzyme families. Microbiol Rev (1991) 7.43
Relationships between Leaf Water Status, Abscisic Acid Levels, and Stomatal Resistance in Maize and Sorghum. Plant Physiol (1975) 6.38
Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information. Nucleic Acids Res (1996) 6.13
Glycosyltransferases: structures, functions, and mechanisms. Annu Rev Biochem (2008) 6.06
Interleukin 1, a potential regulator of fibroblast proliferation. J Immunol (1982) 6.05
Structures and mechanisms of glycosyl hydrolases. Structure (1995) 5.96
A classification of nucleotide-diphospho-sugar glycosyltransferases based on amino acid sequence similarities. Biochem J (1997) 5.86
Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res (1988) 5.85
Comparative genomes of Chlamydia pneumoniae and C. trachomatis. Nat Genet (1999) 5.81
Genetic analysis of case/control data using estimated haplotype frequencies: application to APOE locus variation and Alzheimer's disease. Genome Res (2001) 5.78
Optimizing reproduction in a randomly varying environment. J Theor Biol (1966) 5.69
Effects of high levels of DNA adenine methylation on methyl-directed mismatch repair in Escherichia coli. Genetics (1983) 5.43
Bni1p, a yeast formin linking cdc42p and the actin cytoskeleton during polarized morphogenesis. Science (1997) 5.27
Phospholipid Fatty Acid composition, biomass, and activity of microbial communities from two soil types experimentally exposed to different heavy metals. Appl Environ Microbiol (1993) 5.25
Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res (1991) 5.03
A Drosophila complementary DNA resource. Science (2000) 4.98
Hospital characteristics and mortality rates. N Engl J Med (1989) 4.97
Single-particle electron cryo-microscopy: towards atomic resolution. Q Rev Biophys (2000) 4.86
Inheritance of DNA methylation in Coprinus cinereus. Mol Cell Biol (1986) 4.78
Loss of telomeric DNA during aging of normal and trisomy 21 human lymphocytes. Am J Hum Genet (1993) 4.78
On population growth in a randomly varying environment. Proc Natl Acad Sci U S A (1969) 4.62
The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome. Proc Natl Acad Sci U S A (2008) 4.45
A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling. Bioinformatics (2001) 4.29
Genetic associations with human longevity at the APOE and ACE loci. Nat Genet (1994) 4.17
Consistent cytotoxic-T-lymphocyte targeting of immunodominant regions in human immunodeficiency virus across multiple ethnicities. J Virol (2004) 4.12
454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytol (2009) 4.04
Multidomain architecture of beta-glycosyl transferases: implications for mechanism of action. J Bacteriol (1995) 4.00
Nomenclature for sugar-binding subsites in glycosyl hydrolases. Biochem J (1997) 3.82
Efficacy of the combination rifampin-streptomycin in preventing growth of Mycobacterium ulcerans in early lesions of Buruli ulcer in humans. Antimicrob Agents Chemother (2005) 3.81
The CIC library: a large insert YAC library for genome mapping in Arabidopsis thaliana. Plant J (1995) 3.79
An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana. Plant J (1993) 3.76
The candidate gene for the X-linked Kallmann syndrome encodes a protein related to adhesion molecules. Cell (1991) 3.59
Global patterns of diversity and community structure in marine bacterioplankton. Mol Ecol (2007) 3.50
PlantCARE, a plant cis-acting regulatory element database. Nucleic Acids Res (1999) 3.43
Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution. Science (2001) 3.39
PHACE syndrome. The association of posterior fossa brain malformations, hemangiomas, arterial anomalies, coarctation of the aorta and cardiac defects, and eye abnormalities. Arch Dermatol (1996) 3.38
A comparison of characteristics of Kevorkian euthanasia cases and physician-assisted suicides in Oregon. Gerontologist (2001) 3.31
The Gene-Finder computer tools for analysis of human and model organisms genome sequences. Proc Int Conf Intell Syst Mol Biol (1997) 3.29
Cutaneous hypersensitivity reactions due to thiacetazone in HIV-1 seropositive patients treated for tuberculosis. Lancet (1991) 3.19
Ubiquitin-dependent degradation of multiple F-box proteins by an autocatalytic mechanism. Proc Natl Acad Sci U S A (1999) 3.17
Mps1 is a kinetochore-associated kinase essential for the vertebrate mitotic checkpoint. Cell (2001) 3.16
Construction and characterization of a yeast artificial chromosome library containing seven haploid human genome equivalents. Proc Natl Acad Sci U S A (1990) 3.09
Regional pattern of degeneration in Alzheimer's disease: neuronal loss and histopathological grading. Histopathology (1981) 3.08
An overview of the MAGE gene family with the identification of all human members of the family. Cancer Res (2001) 3.08
Barley endosperm bioassay for gibberellins. I. Parameters of the response system. Plant Physiol (1967) 3.05
A white matter disorder in dementia of the Alzheimer type: a pathoanatomical study. Ann Neurol (1986) 3.04
Coronin promotes the rapid assembly and cross-linking of actin filaments and may link the actin and microtubule cytoskeletons in yeast. J Cell Biol (1999) 3.03
Combinatorial generation of variable fusion proteins in the Ewing family of tumours. EMBO J (1993) 2.91
A new family of genes coding for an antigen recognized by autologous cytolytic T lymphocytes on a human melanoma. J Exp Med (1995) 2.88
Deciphering protein sequence information through hydrophobic cluster analysis (HCA): current status and perspectives. Cell Mol Life Sci (1997) 2.83
Expansion of surveillance case definition for AIDS in resource-poor countries. Lancet (1993) 2.80
Hydrazones as analytical reagents: a review. Talanta (1982) 2.78
Phosphorylation- and ubiquitin-dependent degradation of the cyclin-dependent kinase inhibitor Far1p in budding yeast. Genes Dev (1997) 2.77
Hydrophobic cluster analysis: procedures to derive structural and functional information from 2-D-representation of protein sequences. Biochimie (1990) 2.75
PIK3CA as an oncogene in cervical cancer. Oncogene (2000) 2.75
Axons from CNS neurons regenerate into PNS grafts. Nature (1980) 2.71
Comparative genomics provides evidence for an ancient genome duplication event in fish. Philos Trans R Soc Lond B Biol Sci (2001) 2.66
Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. Genome Res (2001) 2.66
Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA. Nucleic Acids Res (2000) 2.56
Phosphorylation of the Cdc42 exchange factor Cdc24 by the PAK-like kinase Cla4 may regulate polarized growth in yeast. Mol Cell (2000) 2.52
T-cell-mediated protection of mice against virulent Mycobacterium tuberculosis. Infect Immun (1989) 2.51