Published in Cell Res on August 23, 2011
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The DNA repair protein XRCC1 functions in the plant DNA demethylation pathway by stimulating cytosine methylation (5-meC) excision, gap tailoring, and DNA ligation. J Biol Chem (2013) 0.93
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A new pyrimidine base from bacteriophage nucleic acids. Nature (1952) 17.95
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science (2011) 14.29
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science (2011) 13.16
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Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain. Cell (2011) 9.16
Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature (2010) 8.84
TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity. Nature (2011) 8.31
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells. Nature (2011) 7.43
Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair. Cell (2011) 6.80
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells. Nature (2011) 6.48
Reprogramming towards pluripotency requires AID-dependent DNA demethylation. Nature (2010) 6.20
Gadd45a promotes epigenetic gene activation by repair-mediated DNA demethylation. Nature (2007) 5.54
Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells. Mol Cell (2011) 4.89
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Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins. Science (2009) 10.21
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Cell signaling during cold, drought, and salt stress. Plant Cell (2002) 6.67
De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks. Proc Natl Acad Sci U S A (2011) 6.12
ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. Genes Dev (2003) 4.99
A miRNA involved in phosphate-starvation response in Arabidopsis. Curr Biol (2005) 4.62
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The putative plasma membrane Na(+)/H(+) antiporter SOS1 controls long-distance Na(+) transport in plants. Plant Cell (2002) 4.07
Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell (2006) 4.06
Methods and concepts in quantifying resistance to drought, salt and freezing, abiotic stresses that affect plant water status. Plant J (2006) 4.05
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The Arabidopsis CDPK-SnRK superfamily of protein kinases. Plant Physiol (2003) 3.96
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Structural basis for sequence-specific recognition of DNA by TAL effectors. Science (2012) 3.64
A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors. Nature (2009) 3.63
Identification of two protein kinases required for abscisic acid regulation of seed germination, root growth, and gene expression in Arabidopsis. Plant Cell (2007) 3.62
A pathogen-inducible endogenous siRNA in plant immunity. Proc Natl Acad Sci U S A (2006) 3.48
Epigenetic regulation of stress responses in plants. Curr Opin Plant Biol (2009) 3.46
Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol (2008) 3.43
The DNA glycosylase/lyase ROS1 functions in pruning DNA methylation patterns in Arabidopsis. Curr Biol (2007) 3.33
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Overexpression of a plasma membrane Na+/H+ antiporter gene improves salt tolerance in Arabidopsis thaliana. Nat Biotechnol (2002) 3.18
The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell (2008) 3.14
Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome Biol (2007) 3.02
Arabidopsis mutant deficient in 3 abscisic acid-activated protein kinases reveals critical roles in growth, reproduction, and stress. Proc Natl Acad Sci U S A (2009) 3.01
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Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. EMBO J (2007) 2.79
The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. Plant Cell (2005) 2.76
Comparative genomics in salt tolerance between Arabidopsis and aRabidopsis-related halophyte salt cress using Arabidopsis microarray. Plant Physiol (2004) 2.71
Reconstitution in yeast of the Arabidopsis SOS signaling pathway for Na+ homeostasis. Proc Natl Acad Sci U S A (2002) 2.59
Efficient genome editing in plants using a CRISPR/Cas system. Cell Res (2013) 2.57
Molecular mimicry regulates ABA signaling by SnRK2 kinases and PP2C phosphatases. Science (2011) 2.52
The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1. Proc Natl Acad Sci U S A (2006) 2.50
Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation. Proc Natl Acad Sci U S A (2006) 2.46
Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses. Plant Cell (2005) 2.45
Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. Mol Cell (2008) 2.43
Regulation and function of DNA methylation in plants and animals. Cell Res (2011) 2.41
Regulation of abscisic acid biosynthesis. Plant Physiol (2003) 2.41
The Arabidopsis SOS5 locus encodes a putative cell surface adhesion protein and is required for normal cell expansion. Plant Cell (2003) 2.37
The genome of the extremophile crucifer Thellungiella parvula. Nat Genet (2011) 2.33
SCREAM/ICE1 and SCREAM2 specify three cell-state transitional steps leading to arabidopsis stomatal differentiation. Plant Cell (2008) 2.33
Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis. Proc Natl Acad Sci U S A (2014) 2.26
A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance. J Biol Chem (2006) 2.25
Identification and characterization of endogenous small interfering RNAs from rice. Nucleic Acids Res (2005) 2.18
An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein. Cell (2009) 2.16
A novel domain in the protein kinase SOS2 mediates interaction with the protein phosphatase 2C ABI2. Proc Natl Acad Sci U S A (2003) 2.14
RNA helicase-like protein as an early regulator of transcription factors for plant chilling and freezing tolerance. Proc Natl Acad Sci U S A (2002) 2.08
A probabilistic method for small RNA flowgram matching. Pac Symp Biocomput (2008) 2.03
LOS2, a genetic locus required for cold-responsive gene transcription encodes a bi-functional enolase. EMBO J (2002) 2.01
A DEAD box RNA helicase is essential for mRNA export and important for development and stress responses in Arabidopsis. Plant Cell (2004) 2.01
NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation. Genes Dev (2009) 2.00
A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis. Curr Biol (2010) 1.99
Annotating genes of known and unknown function by large-scale coexpression analysis. Plant Physiol (2008) 1.95
From laboratory to field. Using information from Arabidopsis to engineer salt, cold, and drought tolerance in crops. Plant Physiol (2004) 1.95
Salt cress. A halophyte and cryophyte Arabidopsis relative model system and its applicability to molecular genetic analyses of growth and development of extremophiles. Plant Physiol (2004) 1.94
The CRISPR/Cas9 system produces specific and homozygous targeted gene editing in rice in one generation. Plant Biotechnol J (2014) 1.93
Arabidopsis protein kinase PKS5 inhibits the plasma membrane H+ -ATPase by preventing interaction with 14-3-3 protein. Plant Cell (2007) 1.93
A calcium sensor and its interacting protein kinase are global regulators of abscisic acid signaling in Arabidopsis. Dev Cell (2002) 1.92
Novel and nodulation-regulated microRNAs in soybean roots. BMC Genomics (2008) 1.92
Regulation of osmotic stress-responsive gene expression by the LOS6/ABA1 locus in Arabidopsis. J Biol Chem (2002) 1.85
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Identification and mechanism of ABA receptor antagonism. Nat Struct Mol Biol (2010) 1.83
An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation. Nature (2010) 1.82
Regulation of vacuolar Na+/H+ exchange in Arabidopsis thaliana by the salt-overly-sensitive (SOS) pathway. J Biol Chem (2003) 1.82
Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress. FEBS Lett (2006) 1.81
Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination. Nature (2007) 1.81
ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis. Nature (2008) 1.78
A histone acetyltransferase regulates active DNA demethylation in Arabidopsis. Science (2012) 1.78
ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis. Plant J (2010) 1.74
Conservation of the salt overly sensitive pathway in rice. Plant Physiol (2006) 1.74
Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis. BMC Mol Biol (2008) 1.73
Interplay between cold-responsive gene regulation, metabolism and RNA processing during plant cold acclimation. Curr Opin Plant Biol (2007) 1.70
Structural basis for the modular recognition of single-stranded RNA by PPR proteins. Nature (2013) 1.66
Nomenclature for HKT transporters, key determinants of plant salinity tolerance. Trends Plant Sci (2006) 1.64
Application of the CRISPR-Cas system for efficient genome engineering in plants. Mol Plant (2013) 1.63
Insights into salt tolerance from the genome of Thellungiella salsuginea. Proc Natl Acad Sci U S A (2012) 1.62
An Arabidopsis homeodomain transcription factor gene, HOS9, mediates cold tolerance through a CBF-independent pathway. Proc Natl Acad Sci U S A (2004) 1.60
Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action. Proc Natl Acad Sci U S A (2013) 1.60
Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance. Proc Natl Acad Sci U S A (2008) 1.60
Identification of cold-inducible microRNAs in plants by transcriptome analysis. Biochim Biophys Acta (2008) 1.60
The protein kinase SOS2 activates the Arabidopsis H(+)/Ca(2+) antiporter CAX1 to integrate calcium transport and salt tolerance. J Biol Chem (2003) 1.58
Targeted transcriptional repression using a chimeric TALE-SRDX repressor protein. Plant Mol Biol (2011) 1.57
ABA receptors: the START of a new paradigm in phytohormone signalling. J Exp Bot (2010) 1.56
Rapid and highly efficient construction of TALE-based transcriptional regulators and nucleases for genome modification. Plant Mol Biol (2012) 1.55
Arabidopsis decuple mutant reveals the importance of SnRK2 kinases in osmotic stress responses in vivo. Proc Natl Acad Sci U S A (2011) 1.54
Activated expression of an Arabidopsis HD-START protein confers drought tolerance with improved root system and reduced stomatal density. Plant Cell (2008) 1.53
A putative Arabidopsis nucleoporin, AtNUP160, is critical for RNA export and required for plant tolerance to cold stress. Mol Cell Biol (2006) 1.52
A mitochondrial complex I defect impairs cold-regulated nuclear gene expression. Plant Cell (2002) 1.51
AtHKT1 facilitates Na+ homeostasis and K+ nutrition in planta. Plant Physiol (2004) 1.51
An Arabidopsis mutation in translation elongation factor 2 causes superinduction of CBF/DREB1 transcription factor genes but blocks the induction of their downstream targets under low temperatures. Proc Natl Acad Sci U S A (2002) 1.51
Retracted HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants. Proc Natl Acad Sci U S A (2005) 1.51
OSM1/SYP61: a syntaxin protein in Arabidopsis controls abscisic acid-mediated and non-abscisic acid-mediated responses to abiotic stress. Plant Cell (2002) 1.48
Transgenic evaluation of activated mutant alleles of SOS2 reveals a critical requirement for its kinase activity and C-terminal regulatory domain for salt tolerance in Arabidopsis thaliana. Plant Cell (2004) 1.47
SOS2 promotes salt tolerance in part by interacting with the vacuolar H+-ATPase and upregulating its transport activity. Mol Cell Biol (2007) 1.47
Distinctive core histone post-translational modification patterns in Arabidopsis thaliana. PLoS One (2007) 1.46