Published in PLoS One on September 13, 2011
Multilevel comparative analysis of the contributions of genome reduction and heat shock to the Escherichia coli transcriptome. BMC Genomics (2013) 0.98
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Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science (2010) 11.37
Genomic analysis of regulatory network dynamics reveals large topological changes. Nature (2004) 9.32
Phenotypic diversity, population growth, and information in fluctuating environments. Science (2005) 8.21
Noise in protein expression scales with natural protein abundance. Nat Genet (2006) 8.03
Multistability in the lactose utilization network of Escherichia coli. Nature (2004) 7.71
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Functional roles for noise in genetic circuits. Nature (2010) 6.96
Enhancement of cellular memory by reducing stochastic transitions. Nature (2005) 6.01
The complete nucleotide sequence of the tryptophan operon of Escherichia coli. Nucleic Acids Res (1981) 5.91
Stochastic switching as a survival strategy in fluctuating environments. Nat Genet (2008) 5.87
Evolvability and hierarchy in rewired bacterial gene networks. Nature (2008) 3.43
Regulation by transcription attenuation in bacteria: how RNA provides instructions for transcription termination/antitermination decisions. Bioessays (2002) 3.39
Bacterial persistence: a model of survival in changing environments. Genetics (2005) 2.97
Control of bacterial transcription, translation and replication by (p)ppGpp. Curr Opin Microbiol (2008) 2.91
Emergent bistability by a growth-modulating positive feedback circuit. Nat Chem Biol (2009) 2.86
The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli. Mol Microbiol (2008) 2.57
On the relation between effector concentration and the rate of induced enzyme synthesis. Biophys J (1971) 1.50
Genome-wide transcriptional plasticity underlies cellular adaptation to novel challenge. Mol Syst Biol (2007) 1.49
Identification of trp-p2, an internal promoter in the tryptophan operon of Escherichia coli. J Mol Biol (1982) 1.44
Pre-dispositions and epigenetic inheritance in the Escherichia coli lactose operon bistable switch. Mol Syst Biol (2010) 1.24
Synthetic gene recruitment reveals adaptive reprogramming of gene regulation in yeast. Genetics (2006) 1.13
Construction of Escherichia coli gene expression level perturbation collection. Metab Eng (2008) 1.05
The effect of stochasticity on the lac operon: an evolutionary perspective. PLoS Comput Biol (2007) 1.02
Adaptation by stochastic switching of a monostable genetic circuit in Escherichia coli. Mol Syst Biol (2011) 0.95
Refined method for the genomic integration of complex synthetic circuits. J Biosci Bioeng (2010) 0.92
APPLICATION OF PREPARATIVE HIGH-SPEED COUNTERCURRENT CHROMATOGRAPHY FOR SEPARATION OF ELATINE FROM DELPHINIUM SHAWURENSE. J Liq Chromatogr Relat Technol (2008) 2.49
Adaptive response of a gene network to environmental changes by fitness-induced attractor selection. PLoS One (2006) 2.30
Universality and flexibility in gene expression from bacteria to human. Proc Natl Acad Sci U S A (2004) 2.03
Flat-twisted tubing: novel column design for spiral high-speed counter-current chromatography. J Chromatogr A (2009) 1.81
Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of Escherichia coli proteins. Proc Natl Acad Sci U S A (2009) 1.73
Protein folding by the effects of macromolecular crowding. Protein Sci (2004) 1.71
On the relation between fluctuation and response in biological systems. Proc Natl Acad Sci U S A (2003) 1.70
Novel Design for Centrifugal Countercurrent Chromatography: I. Zigzag Toroidal Column. J Liq Chromatogr Relat Technol (2009) 1.67
Darwinian evolution in a translation-coupled RNA replication system within a cell-like compartment. Nat Commun (2013) 1.65
Comparison of sequence reads obtained from three next-generation sequencing platforms. PLoS One (2011) 1.63
New small-scale cross-axis coil planet centrifuge. The design of the apparatus and its application to counter-current chromatographic separation of proteins with aqueous-aqueous polymer phase systems. J Chromatogr A (2006) 1.62
Importance of parasite RNA species repression for prolonged translation-coupled RNA self-replication. Chem Biol (2012) 1.55
Efficient protein selection based on ribosome display system with purified components. Biochem Biophys Res Commun (2006) 1.42
Purification of Food Color Red No. 106 (acid red) using pH-zone-refining counter-current chromatography. J Chromatogr A (2002) 1.41
Evaluation of the effect of column orientation in type-I high-speed counter-current chromatography. J Chromatogr A (2010) 1.39
Preparative separation of isomeric sulfophthalic acids by conventional and pH-zone-refining counter-current chromatography. J Chromatogr A (2002) 1.33
Expression of a cascading genetic network within liposomes. FEBS Lett (2004) 1.30
Partition efficiencies of newly fabricated universal high-speed counter-current chromatograph for separation of two different types of sugar derivatives with organic-aqueous two-phase solvent systems. J Chromatogr A (2013) 1.27
Femtoliter compartment in liposomes for in vitro selection of proteins. Anal Biochem (2006) 1.27
Replication of genetic information with self-encoded replicase in liposomes. Chembiochem (2008) 1.26
New small-scale cross-axis coil planet centrifuge. Partition efficiency and application to purification of bullfrog ribonuclease. J Chromatogr A (2007) 1.23
An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays. Bioinformatics (2008) 1.21
Transition from positive to neutral in mutation fixation along with continuing rising fitness in thermal adaptive evolution. PLoS Genet (2010) 1.19
Preparative separation of di- and trisulfonated components of Quinoline Yellow using affinity-ligand pH-zone-refining counter-current chromatography. J Chromatogr A (2009) 1.18
Compact type-I coil planet centrifuge for counter-current chromatography. J Chromatogr A (2010) 1.16
Coupling of the fusion and budding of giant phospholipid vesicles containing macromolecules. Proc Natl Acad Sci U S A (2012) 1.16
Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays. BMC Genomics (2007) 1.15
Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress. BMC Genomics (2010) 1.13
Stationary phase retention and preliminary application of a spiral disk assembly designed for high-speed counter-current chromatography. J Chromatogr A (2008) 1.12
Preparative separation of lappaconitine, ranaconitine, N-deacetyllappaconitine and N-deacetylranaconitine from crude alkaloids of sample Aconitum sinomontanum Nakai by high-speed counter-current chromatography. J Chromatogr A (2002) 1.08
Countercurrent chromatographic separation and purification of various ribonucleases using a small-scale cross-axis coil planet centrifuge with aqueous-aqueous polymer phase systems. J Chromatogr B Analyt Technol Biomed Life Sci (2009) 1.07
Preparative isolation and purification of rupestonic acid from the Chinese medicinal plant Artemisia rupestris L. by high-speed counter-current chromatography. J Chromatogr A (2005) 1.07
Preparative separation of 1,3,6-pyrenetrisulfonic acid trisodium salt from the color additive D&C Green No. 8 (pyranine) by pH-zone-refining counter-current chromatography. J Chromatogr A (2011) 1.06
On a kinetic origin of heredity: minority control in a replicating system with mutually catalytic molecules. J Theor Biol (2002) 1.06
Construction of Escherichia coli gene expression level perturbation collection. Metab Eng (2008) 1.05
Application of dual counter-current chromatography for rapid sample preparation of N-methylcarbamate pesticides in vegetable oil and citrus fruit. J Chromatogr A (2006) 1.04
Organic high ionic strength aqueous two-phase solvent system series for separation of ultra-polar compounds by spiral high-speed counter-current chromatography. J Chromatogr A (2011) 1.04
Isolation of high-purity casticin from Artemisia annua L. by high-speed counter-current chromatography. J Chromatogr A (2007) 1.04
Population analysis of structural properties of giant liposomes by flow cytometry. Langmuir (2009) 1.04
Sorting of cells of the same size, shape, and cell cycle stage for a single cell level assay without staining. BMC Cell Biol (2006) 1.02
Evolvability of random polypeptides through functional selection within a small library. Protein Eng (2002) 1.02
Conformational change of the actomyosin complex drives the multiple stepping movement. Proc Natl Acad Sci U S A (2002) 1.02
Can an arbitrary sequence evolve towards acquiring a biological function? J Mol Evol (2003) 1.01
Preparative isolation of imperatorin, oxypeucedanin and isoimperatorin from traditional Chinese herb "bai zhi"Angelica dahurica (Fisch. ex Hoffm) Benth. et Hook using multidimensional high-speed counter-current chromatography. J Chromatogr A (2006) 1.01
In vitro evolution of α-hemolysin using a liposome display. Proc Natl Acad Sci U S A (2013) 1.00
Aqueous-aqueous two-phase systems composed of low molecular weight of polyethylene glycols and dextrans for counter-current chromatographic purification of proteins. J Chromatogr B Analyt Technol Biomed Life Sci (2006) 0.99
Counter-current chromatographic separation of nucleic acid constituents with a hydrophilic solvent system. J Chromatogr A (2010) 0.98
Novel Design for Centrifugal Countercurrent Chromatography: II. Studies on Novel Geometries of Zigzag Toroidal Tubing. J Liq Chromatogr Relat Technol (2010) 0.98
Cooperative adaptation to establishment of a synthetic bacterial mutualism. PLoS One (2011) 0.98
Evaluation on the performance of four different column models mounted on the compact type-I coil planet centrifuge. J Chromatogr A (2010) 0.98
Multilevel comparative analysis of the contributions of genome reduction and heat shock to the Escherichia coli transcriptome. BMC Genomics (2013) 0.98
How selection affects phenotypic fluctuation. Mol Syst Biol (2009) 0.98
Ongoing phenotypic and genomic changes in experimental coevolution of RNA bacteriophage Qβ and Escherichia coli. PLoS Genet (2011) 0.97
Programmed vesicle fusion triggers gene expression. Langmuir (2011) 0.97
Separation of flavonoids from the seeds of Vernonia anthelmintica Willd by high-speed counter-current chromatography. J Chromatogr A (2004) 0.97
Novel Design for Centrifugal Counter-Current Chromatography: III. Saw Tooth Column. J Liq Chromatogr Relat Technol (2010) 0.97
Noisy cell growth rate leads to fluctuating protein concentration in bacteria. Phys Biol (2009) 0.96
Experimental rugged fitness landscape in protein sequence space. PLoS One (2006) 0.96
ORGANIC-HIGH IONIC STRENGTH AQUEOUS SOLVENT SYSTEMS FOR SPIRAL COUNTER-CURRENT CHROMATOGRAPHY: GRAPHIC OPTIMIZATION OF PARTITION COEFFICIENT. J Liq Chromatogr Relat Technol (2012) 0.95
Partition Efficiency of High-Pitch Locular Multilayer Coil for Countercurrent Chromatographic Separation of Proteins Using Small-Scale Cross-Axis Coil Planet Centrifuge and Application to Purification of Various Collagenases with Aqueous-Aqueous Polymer Phase Systems. J Liq Chromatogr Relat Technol (2011) 0.95
Cell-free protein synthesis inside giant unilamellar vesicles analyzed by flow cytometry. Langmuir (2012) 0.95
Growth rate-coordinated transcriptome reorganization in bacteria. BMC Genomics (2013) 0.95
Evolution of an arbitrary sequence in solubility. J Mol Evol (2004) 0.95
Size control of giant unilamellar vesicles prepared from inverted emulsion droplets. J Colloid Interface Sci (2012) 0.95
Adaptation by stochastic switching of a monostable genetic circuit in Escherichia coli. Mol Syst Biol (2011) 0.95
Quantitative study of the structure of multilamellar giant liposomes as a container of protein synthesis reaction. Langmuir (2008) 0.95
Typing of Clostridium difficile isolates endemic in Japan by sequencing of slpA and its application to direct typing. J Med Microbiol (2010) 0.95
Nascent chain, mRNA, and ribosome complexes generated by a pure translation system. Biochem Biophys Res Commun (2006) 0.94
In vitro evolution of proteins. J Biosci Bioeng (2006) 0.94
Preparative separation of isomeric and stereoisomeric dicarboxylic acids by pH-zone-refining counter-current chromatography. J Chromatogr A (2007) 0.93
Synthesis of functional proteins within liposomes. Methods Mol Biol (2010) 0.93
Quantification of structural properties of cell-sized individual liposomes by flow cytometry. J Biosci Bioeng (2006) 0.93
PARTITION EFFICIENCY OF NEWLY DESIGNED LOCULAR MULTILAYER COIL FOR COUNTERCURRENT CHROMATOGRAPHIC SEPARATION OF PROTEINS USING SMALL-SCALE CROSS-AXIS COIL PLANET CENTRIFUGE WITH AQUEOUS-AQUEOUS POLYMER PHASE SYSTEMS. J Liq Chromatogr Relat Technol (2009) 0.93
Detection of association and fusion of giant vesicles using a fluorescence-activated cell sorter. Langmuir (2010) 0.93
A controllable gene expression system in liposomes that includes a positive feedback loop. Mol Biosyst (2013) 0.92
Purification of icariin from the extract of Epimedium segittatum using high-speed counter-current chromatography. J Chromatogr A (2002) 0.92
Refined method for the genomic integration of complex synthetic circuits. J Biosci Bioeng (2010) 0.92
Application of preparative high-speed counter-current chromatography for separation of methyl gallate from Acer truncatum Bunge. J Chromatogr A (2005) 0.91
Separation of epigallocatechin and flavonoids from Hypericum perforatum L. by high-speed counter-current chromatography and preparative high-performance liquid chromatography. J Chromatogr A (2008) 0.91
Preparation of two novel monobrominated 2-(2',4'-dihydroxybenzoyl)-3,4,5,6-tetrachlorobenzoic acids and their separation from crude synthetic mixtures using vortex counter-current chromatography. J Chromatogr A (2012) 0.91
Separation of alpha-cyclohexylmandelic acid enantiomers using biphasic chiral recognition high-speed counter-current chromatography. J Chromatogr A (2010) 0.91
Comprehensive analysis of the effects of Escherichia coli ORFs on protein translation reaction. Mol Cell Proteomics (2008) 0.91
Cell-free translation systems for protein engineering. FEBS J (2006) 0.90
Model-based analysis of non-specific binding for background correction of high-density oligonucleotide microarrays. Bioinformatics (2008) 0.90
Compensatory evolution of a WW domain variant lacking the strictly conserved Trp residue. J Mol Evol (2007) 0.90
Cysteinyl leukotriene receptor antagonists inhibit tumor metastasis by inhibiting capillary permeability. Keio J Med (2010) 0.89
Preparative isolation and identification of tyrosinase inhibitors from the seeds of Garcinia kola by high-speed counter-current chromatography. J Chromatogr A (2007) 0.89
Method for the fractionation of dextran by centrifugal precipitation chromatography. Anal Chem (2002) 0.89
Construction of a gene screening system using giant unilamellar liposomes and a fluorescence-activated cell sorter. Anal Chem (2012) 0.88
A genome-wide activity assessment of terminator regions in Saccharomyces cerevisiae provides a ″terminatome″ toolbox. ACS Synth Biol (2013) 0.88
Development and evaluation of a spiral tube column for counter-current chromatography. J Sep Sci (2011) 0.88