PubRank

Cristian Coarfa

Author PubWeight™ 55.76‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. Nat Biotechnol 2010 7.00
2 A SNP discovery method to assess variant allele probability from next-generation resequencing data. Genome Res 2009 4.78
3 A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome. Genome Res 2008 4.06
4 An integrative variant analysis suite for whole exome next-generation sequencing data. BMC Bioinformatics 2012 3.41
5 Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood. Genome Biol 2012 3.31
6 Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome. Gastroenterology 2011 2.60
7 ReadDepth: a parallel R package for detecting copy number alterations from short sequencing reads. PLoS One 2011 2.34
8 Proinflammatory role for let-7 microRNAS in experimental asthma. J Biol Chem 2010 2.08
9 A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy. PLoS One 2012 1.98
10 GASZ is essential for male meiosis and suppression of retrotransposon expression in the male germline. PLoS Genet 2009 1.83
11 Prostate cancer-associated mutations in speckle-type POZ protein (SPOP) regulate steroid receptor coactivator 3 protein turnover. Proc Natl Acad Sci U S A 2013 1.66
12 G-CSF receptor positive neuroblastoma subpopulations are enriched in chemotherapy-resistant or relapsed tumors and are highly tumorigenic. Cancer Res 2013 1.41
13 Genomic hypomethylation in the human germline associates with selective structural mutability in the human genome. PLoS Genet 2012 1.35
14 MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing. Mol Hum Reprod 2010 1.31
15 A genome-wide search for promoters that respond to increased MYCN reveals both new oncogenic and tumor suppressor microRNAs associated with aggressive neuroblastoma. Cancer Res 2011 1.23
16 Atlas2 Cloud: a framework for personal genome analysis in the cloud. BMC Genomics 2012 1.20
17 Identification of a pan-cancer oncogenic microRNA superfamily anchored by a central core seed motif. Nat Commun 2013 1.19
18 The repertoire and features of human platelet microRNAs. PLoS One 2012 1.19
19 Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing. Nucleic Acids Res 2014 1.10
20 Analysis of microRNA expression in the prepubertal testis. PLoS One 2010 1.08
21 SOX2 regulates YAP1 to maintain stemness and determine cell fate in the osteo-adipo lineage. Cell Rep 2013 1.07
22 The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences. BMC Bioinformatics 2012 1.05
23 miRNA data analysis: next-gen sequencing. Methods Mol Biol 2012 1.03
24 Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain. BMC Genomics 2011 0.99
25 Long-range massively parallel mate pair sequencing detects distinct mutations and similar patterns of structural mutability in two breast cancer cell lines. Cancer Genet 2011 0.98
26 Induced multipotency in adult keratinocytes through down-regulation of ΔNp63 or DGCR8. Proc Natl Acad Sci U S A 2014 0.92
27 Coactivator SRC-2-dependent metabolic reprogramming mediates prostate cancer survival and metastasis. J Clin Invest 2015 0.86
28 mtDNA haplogroup and single nucleotide polymorphisms structure human microbiome communities. BMC Genomics 2014 0.86
29 Steroid receptor coactivator 1 is an integrator of glucose and NAD+/NADH homeostasis. Mol Endocrinol 2014 0.80
30 Expression and phosphorylation of the AS160_v2 splice variant supports GLUT4 activation and the Warburg effect in multiple myeloma. Cancer Metab 2013 0.78
31 Analysis of interactions between the epigenome and structural mutability of the genome using Genboree Workbench tools. BMC Bioinformatics 2014 0.76
32 Chromatin changes in dicer-deficient mouse embryonic stem cells in response to retinoic acid induced differentiation. PLoS One 2013 0.76
33 Confounding by repetitive elements and CpG islands does not explain the association between hypomethylation and genomic instability. PLoS Genet 2013 0.75
34 Correction: miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer. Oncotarget 2017 0.75
35 miR-30a targets gene networks that promote browning of human and mouse adipocytes. Am J Physiol Endocrinol Metab 2020 0.75
36 Sexual dimorphism of the pulmonary transcriptome in neonatal hyperoxic lung injury: identification of angiogenesis as a key pathway. Am J Physiol Lung Cell Mol Physiol 2017 0.75
37 PRec-I-DCM3: a parallel framework for fast and accurate large-scale phylogeny reconstruction. Int J Bioinform Res Appl 2006 0.75