Published in MBio on October 11, 2011
Cyclic di-GMP: the first 25 years of a universal bacterial second messenger. Microbiol Mol Biol Rev (2013) 4.69
Crystal structure of an HD-GYP domain cyclic-di-GMP phosphodiesterase reveals an enzyme with a novel trinuclear catalytic iron centre. Mol Microbiol (2013) 1.67
Divergence and convergence in enzyme evolution. J Biol Chem (2011) 1.56
Sensing the messenger: the diverse ways that bacteria signal through c-di-GMP. Protein Sci (2012) 1.38
Nitric oxide modulates bacterial biofilm formation through a multicomponent cyclic-di-GMP signaling network. Mol Cell (2012) 1.25
An HD-domain phosphodiesterase mediates cooperative hydrolysis of c-di-AMP to affect bacterial growth and virulence. Proc Natl Acad Sci U S A (2015) 1.24
Cyclic di-GMP signalling and the regulation of bacterial virulence. Microbiology (2013) 1.12
Crystal structure of PhnZ in complex with substrate reveals a di-iron oxygenase mechanism for catabolism of organophosphonates. Proc Natl Acad Sci U S A (2014) 0.93
An HD-GYP cyclic di-guanosine monophosphate phosphodiesterase with a non-heme diiron-carboxylate active site. Biochemistry (2013) 0.90
C-di-GMP hydrolysis by Pseudomonas aeruginosa HD-GYP phosphodiesterases: analysis of the reaction mechanism and novel roles for pGpG. PLoS One (2013) 0.90
Bacterial Rotary Export ATPases Are Allosterically Regulated by the Nucleotide Second Messenger Cyclic-di-GMP. J Biol Chem (2015) 0.90
Organophosphonate-degrading PhnZ reveals an emerging family of HD domain mixed-valent diiron oxygenases. Proc Natl Acad Sci U S A (2013) 0.86
Cyclic Di-GMP phosphodiesterases RmdA and RmdB are involved in regulating colony morphology and development in Streptomyces coelicolor. J Bacteriol (2012) 0.83
An Extended Cyclic Di-GMP Network in the Predatory Bacterium Bdellovibrio bacteriovorus. J Bacteriol (2015) 0.80
Cyclic Di-GMP Regulates Type IV Pilus-Dependent Motility in Myxococcus xanthus. J Bacteriol (2015) 0.80
Occurrence of cyclic di-GMP-modulating output domains in cyanobacteria: an illuminating perspective. MBio (2013) 0.80
Structural basis of functional diversification of the HD-GYP domain revealed by the Pseudomonas aeruginosa PA4781 protein, which displays an unselective bimetallic binding site. J Bacteriol (2015) 0.78
A systematic analysis of the in vitro and in vivo functions of the HD-GYP domain proteins of Vibrio cholerae. BMC Microbiol (2014) 0.78
Progress in understanding of the molecular basis underlying functional diversification of cyclic di-nucleotide turnover proteins. J Bacteriol (2016) 0.78
Active Site Metal Occupancy and Cyclic Di-GMP Phosphodiesterase Activity of Thermotoga maritima HD-GYP. Biochemistry (2016) 0.77
An HD domain phosphohydrolase active site tailored for oxetanocin-A biosynthesis. Proc Natl Acad Sci U S A (2016) 0.76
Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr (2004) 227.01
The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr (1994) 187.88
UCSF Chimera--a visualization system for exploratory research and analysis. J Comput Chem (2004) 112.47
Phaser crystallographic software. J Appl Crystallogr (2007) 108.34
XDS. Acta Crystallogr D Biol Crystallogr (2010) 67.46
Scaling and assessment of data quality. Acta Crystallogr D Biol Crystallogr (2005) 61.38
T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol (2000) 57.88
ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics (1999) 21.85
BDELLOVIBRIO BACTERIOVORUS GEN. ET SP. N., A PREDATORY, ECTOPARASITIC, AND BACTERIOLYTIC MICROORGANISM. Antonie Van Leeuwenhoek (1963) 8.81
Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid. Nature (2008) 6.16
Automated structure solution with the PHENIX suite. Methods Mol Biol (2008) 5.65
C-di-GMP: the dawning of a novel bacterial signalling system. Mol Microbiol (2005) 5.41
Retracted Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover. Proc Natl Acad Sci U S A (2006) 4.92
A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective. Science (2004) 3.87
PilZ domain is part of the bacterial c-di-GMP binding protein. Bioinformatics (2005) 3.59
RF cloning: a restriction-free method for inserting target genes into plasmids. J Biochem Biophys Methods (2006) 3.57
Structural and mechanistic determinants of c-di-GMP signalling. Nat Rev Microbiol (2009) 3.39
Structure of BeF3- -modified response regulator PleD: implications for diguanylate cyclase activation, catalysis, and feedback inhibition. Structure (2007) 2.93
MSDmotif: exploring protein sites and motifs. BMC Bioinformatics (2008) 2.48
Structural insight into the mechanism of substrate specificity and catalytic activity of an HD-domain phosphohydrolase: the 5'-deoxyribonucleotidase YfbR from Escherichia coli. J Mol Biol (2008) 2.19
Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase. Nature (2009) 2.15
A specialized version of the HD hydrolase domain implicated in signal transduction. J Mol Microbiol Biotechnol (1999) 1.86
Exo84 and Sec5 are competitive regulatory Sec6/8 effectors to the RalA GTPase. EMBO J (2005) 1.75
Characterizing the flagellar filament and the role of motility in bacterial prey-penetration by Bdellovibrio bacteriovorus. Mol Microbiol (2006) 1.60
Predation by Bdellovibrio bacteriovorus HD100 requires type IV pili. J Bacteriol (2007) 1.51
Cell-cell signal-dependent dynamic interactions between HD-GYP and GGDEF domain proteins mediate virulence in Xanthomonas campestris. Proc Natl Acad Sci U S A (2010) 1.48
The HD-GYP domain of RpfG mediates a direct linkage between the Rpf quorum-sensing pathway and a subset of diguanylate cyclase proteins in the phytopathogen Xanthomonas axonopodis pv citri. Mol Microbiol (2006) 1.41
The crystal structure of AMP-bound PDE4 suggests a mechanism for phosphodiesterase catalysis. Biochemistry (2003) 1.30
Crystal structure of a substrate complex of myo-inositol oxygenase, a di-iron oxygenase with a key role in inositol metabolism. Proc Natl Acad Sci U S A (2006) 1.27
Analysis of the HD-GYP domain cyclic dimeric GMP phosphodiesterase reveals a role in motility and the enzootic life cycle of Borrelia burgdorferi. Infect Immun (2011) 1.21
Structural insight into the mechanism of c-di-GMP hydrolysis by EAL domain phosphodiesterases. J Mol Biol (2010) 1.12
Bdellovibrio host dependence: the search for signal molecules and genes that regulate the intraperiplasmic growth cycle. J Bacteriol (1992) 1.02
Intermolecular interactions between HD-GYP and GGDEF domain proteins mediate virulence-related signal transduction in Xanthomonas campestris. Virulence (2010) 0.97
Assessment of the mobilizable vector plasmids pSUP202 and pSUP404.2 as genetic tools for the predatory bacterium Bdellovibrio bacteriovorus. Curr Microbiol (2010) 0.81
A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective. Science (2004) 3.87
Variation in the strength of selected codon usage bias among bacteria. Nucleic Acids Res (2005) 3.18
N-acylhomoserine lactones undergo lactonolysis in a pH-, temperature-, and acyl chain length-dependent manner during growth of Yersinia pseudotuberculosis and Pseudomonas aeruginosa. Infect Immun (2002) 3.00
Bdellovibrio as therapeutic agents: a predatory renaissance? Nat Rev Microbiol (2004) 1.70
Characterizing the flagellar filament and the role of motility in bacterial prey-penetration by Bdellovibrio bacteriovorus. Mol Microbiol (2006) 1.60
Predation by Bdellovibrio bacteriovorus HD100 requires type IV pili. J Bacteriol (2007) 1.51
A novel assay to monitor predator-prey interactions for Bdellovibrio bacteriovorus 109 J reveals a role for methyl-accepting chemotaxis proteins in predation. Environ Microbiol (2003) 1.49
The first bite--profiling the predatosome in the bacterial pathogen Bdellovibrio. PLoS One (2010) 1.27
Effects of orally administered Bdellovibrio bacteriovorus on the well-being and Salmonella colonization of young chicks. Appl Environ Microbiol (2011) 1.23
The evolution of new lipoprotein subunits of the bacterial outer membrane BAM complex. Mol Microbiol (2012) 1.21
Discrete cyclic di-GMP-dependent control of bacterial predation versus axenic growth in Bdellovibrio bacteriovorus. PLoS Pathog (2012) 1.21
Manipulating each MreB of Bdellovibrio bacteriovorus gives diverse morphological and predatory phenotypes. J Bacteriol (2009) 1.17
Quorum sensing in Yersinia enterocolitica controls swimming and swarming motility. J Bacteriol (2006) 1.16
Bdellovibrio: growth and development during the predatory cycle. Curr Opin Microbiol (2006) 1.07
A predatory patchwork: membrane and surface structures of Bdellovibrio bacteriovorus. Adv Microb Physiol (2009) 1.03
Biofilm formation by Bacillus subtilis: new insights into regulatory strategies and assembly mechanisms. Mol Microbiol (2014) 0.98
Three motAB stator gene products in Bdellovibrio bacteriovorus contribute to motility of a single flagellum during predatory and prey-independent growth. J Bacteriol (2010) 0.98
Roles of multiple flagellins in flagellar formation and flagellar growth post bdelloplast lysis in Bdellovibrio bacteriovorus. J Mol Biol (2009) 0.98
Predatory Bdellovibrio bacteria use gliding motility to scout for prey on surfaces. J Bacteriol (2011) 0.96
Laboratory maintenance of Bdellovibrio. Curr Protoc Microbiol (2008) 0.96
A simple method for genome-wide screening for advantageous insertions of mobile DNAs in Escherichia coli. Curr Biol (2002) 0.94
Functional interplay between the Yersinia pseudotuberculosis YpsRI and YtbRI quorum sensing systems modulates swimming motility by controlling expression of flhDC and fliA. Mol Microbiol (2008) 0.93
A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus. ISME J (2012) 0.92
Bdellovibrio predation in the presence of decoys: Three-way bacterial interactions revealed by mathematical and experimental analyses. Appl Environ Microbiol (2006) 0.91
Bifunctional nanotube scaffolds for diverse ligands are purified simply from Escherichia coli strains coexpressing two functionalized flagellar genes. Nano Lett (2007) 0.91
Spiral architecture of the nucleoid in Bdellovibrio bacteriovorus. J Bacteriol (2010) 0.91
Specialized peptidoglycan hydrolases sculpt the intra-bacterial niche of predatory Bdellovibrio and increase population fitness. PLoS Pathog (2012) 0.90
Activity of Bdellovibrio hit locus proteins, Bd0108 and Bd0109, links Type IVa pilus extrusion/retraction status to prey-independent growth signalling. PLoS One (2013) 0.89
Early development and quorum sensing in bacterial biofilms. J Math Biol (2003) 0.87
In Helicobacter pylori auto-inducer-2, but not LuxS/MccAB catalysed reverse transsulphuration, regulates motility through modulation of flagellar gene transcription. BMC Microbiol (2010) 0.85
Helicobacter pylori FlhB function: the FlhB C-terminal homologue HP1575 acts as a "spare part" to permit flagellar export when the HP0770 FlhBCC domain is deleted. J Bacteriol (2006) 0.85
Phosphorylated DegU manipulates cell fate differentiation in the Bacillus subtilis biofilm. J Bacteriol (2013) 0.84
Quorum sensing and the lifestyle of Yersinia. Curr Issues Mol Biol (2006) 0.84
The Bdellovibrio bacteriovorus twin-arginine transport system has roles in predatory and prey-independent growth. Microbiology (2011) 0.83
Genome analysis of a simultaneously predatory and prey-independent, novel Bdellovibrio bacteriovorus from the River Tiber, supports in silico predictions of both ancient and recent lateral gene transfer from diverse bacteria. BMC Genomics (2012) 0.82
Nucleases in Bdellovibrio bacteriovorus contribute towards efficient self-biofilm formation and eradication of preformed prey biofilms. FEMS Microbiol Lett (2013) 0.81
Manufacture of stable palladium and gold nanoparticles on native and genetically engineered flagella scaffolds. Biotechnol Bioeng (2008) 0.80
A chimeric N-terminal Escherichia coli--C-terminal Rhodobacter sphaeroides FliG rotor protein supports bidirectional E. coli flagellar rotation and chemotaxis. J Bacteriol (2005) 0.80
Mutagenesis of RpoE-like sigma factor genes in Bdellovibrio reveals differential control of groEL and two groES genes. BMC Microbiol (2012) 0.79
A coiled-coil-repeat protein 'Ccrp' in Bdellovibrio bacteriovorus prevents cellular indentation, but is not essential for vibroid cell morphology. FEMS Microbiol Lett (2010) 0.77
Erratum: Ankyrin-mediated self-protection during cell invasion by the bacterial predator Bdellovibrio bacteriovorus. Nat Commun (2016) 0.75