Published in Comput Biol Chem on August 22, 2011
Emerging methods in protein co-evolution. Nat Rev Genet (2013) 2.72
Protein topology from predicted residue contacts. Protein Sci (2011) 1.25
From principal component to direct coupling analysis of coevolution in proteins: low-eigenvalue modes are needed for structure prediction. PLoS Comput Biol (2013) 1.03
Structural constraints on the covariance matrix derived from multiple aligned protein sequences. PLoS One (2011) 0.99
Fast and accurate multivariate Gaussian modeling of protein families: predicting residue contacts and protein-interaction partners. PLoS One (2014) 0.97
Structural constraints identified with covariation analysis in ribosomal RNA. PLoS One (2012) 0.88
TMFoldRec: a statistical potential-based transmembrane protein fold recognition tool. BMC Bioinformatics (2015) 0.84
Reduction, alignment and visualisation of large diverse sequence families. BMC Bioinformatics (2016) 0.80
Prediction of protein domain boundaries from inverse covariances. Proteins (2012) 0.80
Exploring RNA conformational space under sparse distance restraints. Sci Rep (2017) 0.78
The Phylogenetic Signature Underlying ATP Synthase c-Ring Compliance. Biophys J (2015) 0.78
Structure, dynamics and implied gating mechanism of a human cyclic nucleotide-gated channel. PLoS Comput Biol (2014) 0.78
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol (1999) 33.07
The PSIPRED protein structure prediction server. Bioinformatics (2000) 20.58
Evolutionarily conserved pathways of energetic connectivity in protein families. Science (1999) 9.12
Evolutionarily conserved networks of residues mediate allosteric communication in proteins. Nat Struct Biol (2003) 6.50
Correlated mutations and residue contacts in proteins. Proteins (1994) 5.20
Identification of direct residue contacts in protein-protein interaction by message passing. Proc Natl Acad Sci U S A (2008) 4.37
Computational methods for the prediction of protein interactions. Curr Opin Struct Biol (2002) 3.35
Evolutionary information for specifying a protein fold. Nature (2005) 3.23
Coevolving protein residues: maximum likelihood identification and relationship to structure. J Mol Biol (1999) 2.49
How frequent are correlated changes in families of protein sequences? Proc Natl Acad Sci U S A (1994) 2.41
Disentangling direct from indirect co-evolution of residues in protein alignments. PLoS Comput Biol (2010) 1.98
A simple and fast secondary structure prediction method using hidden neural networks. Bioinformatics (2004) 1.77
Global fold determination from a small number of distance restraints. J Mol Biol (1995) 1.64
Predicting protein interaction sites from residue spatial sequence profile and evolution rate. FEBS Lett (2005) 1.49
Effectiveness of correlation analysis in identifying protein residues undergoing correlated evolution. Protein Eng (1997) 1.46
A 'periodic table' for protein structures. Nature (2002) 1.36
Prediction of protein structure from ideal forms. Proteins (2008) 1.16
Probing the "dark matter" of protein fold space. Structure (2009) 1.16
Prediction of protein residue contacts with a PDB-derived likelihood matrix. Protein Eng (2002) 1.07
De novo backbone scaffolds for protein design. Proteins (2010) 0.98
Using scores derived from statistical coupling analysis to distinguish correct and incorrect folds in de-novo protein structure prediction. Proteins (2008) 0.96
Secondary structure formation in model polypeptide chains. Protein Eng (1994) 0.90
Exploring the limits of fold discrimination by structural alignment: a large scale benchmark using decoys of known fold. Comput Biol Chem (2011) 0.85
Dynamic domain threading. Proteins (2006) 0.84
Sequence conservation and correlation measures in protein structure prediction. Comput Chem (1994) 0.83
Role of the polycomb protein EED in the propagation of repressive histone marks. Nature (2009) 6.62
Extreme Lateral Interbody Fusion (XLIF): a novel surgical technique for anterior lumbar interbody fusion. Spine J (2006) 4.69
Terminally differentiated CD8⁺ T cells negatively affect bone regeneration in humans. Sci Transl Med (2013) 2.43
Control of the G2/M transition. Mol Biotechnol (2006) 2.02
Next-generation stool DNA test accurately detects colorectal cancer and large adenomas. Gastroenterology (2011) 1.86
Loss of CBP causes T cell lymphomagenesis in synergy with p27Kip1 insufficiency. Cancer Cell (2004) 1.80
Minimally-invasive technique for transforaminal lumbar interbody fusion (TLIF). Eur Spine J (2005) 1.56
p130/p107/p105Rb-dependent transcriptional repression during DNA-damage-induced cell-cycle exit at G2. J Cell Sci (2005) 1.39
High detection rates of colorectal neoplasia by stool DNA testing with a novel digital melt curve assay. Gastroenterology (2008) 1.34
G2 arrest in response to topoisomerase II inhibitors: the role of p53. Cancer Res (2003) 1.31
Clinical performance of an automated stool DNA assay for detection of colorectal neoplasia. Clin Gastroenterol Hepatol (2013) 1.30
Length of mitotic arrest induced by microtubule-stabilizing drugs determines cell death after mitotic exit. Mol Cancer Ther (2009) 1.24
Simple physics-based analytical formulas for the potentials of mean force for the interaction of amino acid side chains in water. 2. Tests with simple spherical systems. J Phys Chem B (2007) 1.23
Stool DNA testing for the detection of pancreatic cancer: assessment of methylation marker candidates. Cancer (2011) 1.20
Alpha1-antitrypsin and neutrophil elastase imbalance and lung cancer risk. Chest (2005) 1.20
The stool DNA test is more accurate than the plasma septin 9 test in detecting colorectal neoplasia. Clin Gastroenterol Hepatol (2011) 1.19
Analyzing the G2/M checkpoint. Methods Mol Biol (2004) 1.14
Physiologically based boundary conditions in finite element modelling. J Biomech (2006) 1.12
Structural and functional analysis of prehistoric lentiviruses uncovers an ancient molecular interface. Cell Host Microbe (2010) 1.11
A survey of formal methods for determining the centre of rotation of ball joints. J Biomech (2005) 1.08
Regulation of sororin by Cdk1-mediated phosphorylation. J Cell Sci (2011) 1.08
An unusual choanoflagellate protein released by Hedgehog autocatalytic processing. Proc Biol Sci (2006) 1.07
Influence of changes in stem positioning on femoral loading after THR using a short-stemmed hip implant. Clin Biomech (Bristol, Avon) (2007) 1.06
Kyphoplasty-augmented short-segment pedicle screw fixation of traumatic lumbar burst fractures: initial clinical experience and literature review. Neurosurg Focus (2005) 1.04
Joint line elevation in revision TKA leads to increased patellofemoral contact forces. J Orthop Res (2010) 1.04
Association of nucleotide patterns with gene function classes: application to human 3' untranslated sequences. Bioinformatics (2002) 1.03
Toward the detection and validation of repeats in protein structure. Proteins (2004) 1.02
Developmental hip dysplasia treated with total hip arthroplasty with a straight stem and a threaded cup. J Bone Joint Surg Am (2004) 1.02
De novo backbone scaffolds for protein design. Proteins (2010) 0.98
Short and long-term tumor cell responses to Aurora kinase inhibitors. Exp Cell Res (2009) 0.98
Absolute and functional iron deficiency in professional athletes during training and recovery. Int J Cardiol (2010) 0.96
Using scores derived from statistical coupling analysis to distinguish correct and incorrect folds in de-novo protein structure prediction. Proteins (2008) 0.96
Flexible secondary structure based protein structure comparison applied to the detection of circular permutation. J Comput Biol (2006) 0.96
Prolonged Jackson-Pratt drainage in the management of lumbar cerebrospinal fluid leaks. Surg Neurol (2006) 0.96
Quantification of methylated markers with a multiplex methylation-specific technology. Clin Chem (2011) 0.95
Mechanical conditions in the initial phase of bone healing. Clin Biomech (Bristol, Avon) (2006) 0.95
Structure of the capsid amino-terminal domain from the betaretrovirus, Jaagsiekte sheep retrovirus. J Mol Biol (2008) 0.95
Circulating endothelial progenitor cells inversely associate with organ dysfunction in sepsis. Intensive Care Med (2012) 0.95
THA loading arising from increased femoral anteversion and offset may lead to critical cement stresses. J Orthop Res (2003) 0.94
The mechanism of erythrocyte invasion by the malarial parasite, Plasmodium falciparum. Semin Cell Dev Biol (2011) 0.93
The influence of alignment on the musculo-skeletal loading conditions at the knee. Langenbecks Arch Surg (2003) 0.92
Efficacy of the functional movement screen: a review. J Strength Cond Res (2014) 0.91
The spectral content of postural sway during quiet stance: influences of age, vision and somatosensory inputs. J Electromyogr Kinesiol (2011) 0.91
Comparative evaluation of a novel measurement tool to assess lumbar spine posture and range of motion. Eur Spine J (2012) 0.91
Patellofemoral joint contact forces during activities with high knee flexion. J Orthop Res (2011) 0.90
Monopolar spindle 1 (MPS1) kinase promotes production of closed MAD2 (C-MAD2) conformer and assembly of the mitotic checkpoint complex. J Biol Chem (2013) 0.90
Lumbar spinal loads vary with body height and weight. Med Eng Phys (2012) 0.90
Minimally disruptive decompression and transforaminal lumbar interbody fusion. Spine J (2006) 0.90
N-acetyltransferase 1 and 2 genotypes do not predict response or toxicity to treatment with mesalamine and sulfasalazine in patients with ulcerative colitis. Am J Gastroenterol (2002) 0.90
Lumbar diskectomy in a human-habituated mountain gorilla (Gorilla beringei beringei). Clin Neurol Neurosurg (2006) 0.88
A survey of formal methods for determining functional joint axes. J Biomech (2006) 0.88
On the evolutionary origin of the chaperonins. Proteins (2011) 0.88
Sampling of near-native protein conformations during protein structure refinement using a coarse-grained model, normal modes, and molecular dynamics simulations. Proteins (2008) 0.87
The expression of proinflammatory cytokines and matrix metalloproteinases in the synovial membranes of patients with osteoarthritis compared with traumatic knee disorders. Arthroscopy (2010) 0.87
An enhanced and validated generic thoraco-lumbar spine model for prediction of muscle forces. Med Eng Phys (2011) 0.87
Structure motif discovery and mining the PDB. Bioinformatics (2002) 0.86
Stair climbing results in more challenging patellofemoral contact mechanics and kinematics than walking at early knee flexion under physiological-like quadriceps loading. J Biomech (2009) 0.86
Distribution of bone mineral density with age and gender in the proximal tibia. Clin Biomech (Bristol, Avon) (2004) 0.86
Testing homology with Contact Accepted mutatiOn (CAO): a contact-based Markov model of protein evolution. Comput Biol Chem (2003) 0.86
Threading using neural nEtwork (TUNE): the measure of protein sequence-structure compatibility. Bioinformatics (2002) 0.85
Exploring the limits of fold discrimination by structural alignment: a large scale benchmark using decoys of known fold. Comput Biol Chem (2011) 0.85
Amino acid encoding schemes from protein structure alignments: multi-dimensional vectors to describe residue types. J Theor Biol (2002) 0.85
Extreme levels of noise constitute a key neuromuscular deficit in the elderly. PLoS One (2012) 0.84
A review of lumbar spinal instrumentation: evidence and controversy. J Neurol Neurosurg Psychiatry (2011) 0.84
A hierarchic collision detection algorithm for simple Brownian dynamics. Comput Biol Chem (2010) 0.84
Kinetic and kinematic differences between deadlifts and goodmornings. BMC Sports Sci Med Rehabil (2013) 0.83
Biomechanical, microvascular, and cellular factors promote muscle and bone regeneration. Exerc Sport Sci Rev (2008) 0.83
Analysis of mitotic phosphorylation of borealin. BMC Cell Biol (2007) 0.83
Velocity of lordosis angle during spinal flexion and extension. PLoS One (2012) 0.82
Regulation of Borealin by phosphorylation at serine 219. J Cell Biochem (2010) 0.82
Borealin is repressed in response to p53/Rb signaling. Cell Biol Int (2007) 0.82
Modulation of the relationship between external knee adduction moments and medial joint contact forces across subjects and activities. Arthritis Rheumatol (2014) 0.82
Effect of fatigue on force fluctuations in knee extensors in young adults. Philos Trans A Math Phys Eng Sci (2010) 0.82
In vivo spinal posture during upright and reclined sitting in an office chair. Biomed Res Int (2013) 0.82
Collateral ligament length change patterns after joint line elevation may not explain midflexion instability following TKA. Med Eng Phys (2011) 0.81
Nanopore-based assay for detection of methylation in double-stranded DNA fragments. ACS Nano (2015) 0.81
Nerve injury to the posterior rami medial branch during the insertion of pedicle screws: comparison of mini-open versus percutaneous pedicle screw insertion techniques. Spine (Phila Pa 1976) (2009) 0.81
Protein fold comparison by the alignment of topological strings. Protein Eng (2003) 0.81
Surgical approach influences periprosthetic femoral bone density. Clin Orthop Relat Res (2005) 0.81
Modulation of matrix metalloprotease-2 levels by mechanical loading of three-dimensional mesenchymal stem cell constructs: impact on in vitro tube formation. Tissue Eng Part A (2010) 0.81
The SCoRE residual: a quality index to assess the accuracy of joint estimations. J Biomech (2011) 0.80
Re-evaluating the "rules" of protein topology. J Comput Biol (2010) 0.80
Protein structures, folds and fold spaces. J Phys Condens Matter (2009) 0.80
Generic rules of mechano-regulation combined with subject specific loading conditions can explain bone adaptation after THA. PLoS One (2012) 0.80
Joint angles of the ankle, knee, and hip and loading conditions during split squats. J Appl Biomech (2013) 0.80
Influence of prosthesis design and implantation technique on implant stresses after cementless revision THR. J Orthop Surg Res (2011) 0.79
Modelling zinc-binding proteins with GADGET: genetic algorithm and distance geometry for exploring topology. J Mol Biol (2003) 0.79
Protein model refinement using structural fragment tessellation. Comput Biol Chem (2006) 0.79
Automated intraoperative EMG testing during percutaneous pedicle screw placement. Spine J (2005) 0.79
Functional site prediction selects correct protein models. BMC Bioinformatics (2008) 0.79
Gene expression microarrays. Methods Mol Med (2003) 0.78
DNA Methylation and Mutation of Small Colonic Neoplasms in Ulcerative Colitis and Crohn's Colitis: Implications for Surveillance. Inflamm Bowel Dis (2016) 0.78
Methylated eyes absent 4 (EYA4) gene promotor in non-neoplastic mucosa of ulcerative colitis patients with colorectal cancer: evidence for a field effect. Inflamm Bowel Dis (2013) 0.78
Stool methylated DNA markers decrease following colorectal cancer resection--implications for surveillance. Dig Dis Sci (2014) 0.78
Use of a resorbable sheet in iliac crest reconstruction in a sheep model. Orthopedics (2002) 0.78
Coarse-grained simulation of myosin-V movement. Comput Math Methods Med (2012) 0.78
The weighted optimal common shape technique improves identification of the hip joint center of rotation in vivo. J Orthop Res (2011) 0.78
Stabilization of anterior cervical spine with bioabsorbable polymer in one- and two-level fusions. Neurosurgery (2004) 0.77