Published in Nat Methods on October 30, 2011
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A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies. Nat Genet (2009) 2.53
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A stele-enriched gene regulatory network in the Arabidopsis root. Mol Syst Biol (2011) 1.49
Matrix and Steiner-triple-system smart pooling assays for high-performance transcription regulatory network mapping. Nat Methods (2007) 1.49
Omics meet networks - using systems approaches to infer regulatory networks in plants. Curr Opin Plant Biol (2009) 1.34
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Circadian rhythms from flies to human. Nature (2002) 4.95
Intercellular coupling confers robustness against mutations in the SCN circadian clock network. Cell (2007) 4.87
FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis. Science (2007) 4.64
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Bioluminescence imaging of individual fibroblasts reveals persistent, independently phased circadian rhythms of clock gene expression. Curr Biol (2004) 4.49
A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock. Science (2009) 4.49
Cell identity mediates the response of Arabidopsis roots to abiotic stress. Science (2008) 4.40
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Melanopsin (Opn4) requirement for normal light-induced circadian phase shifting. Science (2002) 4.24
Molecular basis of seasonal time measurement in Arabidopsis. Nature (2002) 4.24
Melanopsin is required for non-image-forming photic responses in blind mice. Science (2003) 4.22
The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Front Plant Sci (2011) 4.16
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Genome-wide single-nucleotide polymorphism analysis defines haplotype patterns in mouse. Proc Natl Acad Sci U S A (2003) 3.93
A gene-centered C. elegans protein-DNA interaction network. Cell (2006) 3.84
Comparative population genomics of maize domestication and improvement. Nat Genet (2012) 3.78
Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet (2012) 3.74
A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics (2008) 3.57
Targeted degradation of TOC1 by ZTL modulates circadian function in Arabidopsis thaliana. Nature (2003) 3.56
FKF1 F-box protein mediates cyclic degradation of a repressor of CONSTANS in Arabidopsis. Science (2005) 3.56
Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population. Nat Genet (2011) 3.51
FKF1 is essential for photoperiodic-specific light signalling in Arabidopsis. Nature (2003) 3.47
Gramene: a bird's eye view of cereal genomes. Nucleic Acids Res (2006) 3.47
Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock. Curr Biol (2005) 3.36
Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. PLoS Genet (2008) 3.35
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Photoperiodic control of flowering: not only by coincidence. Trends Plant Sci (2006) 3.34
Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development. Genome Biol (2008) 3.33
A first version of the Caenorhabditis elegans Promoterome. Genome Res (2004) 3.29
A genome-wide RNAi screen for modifiers of the circadian clock in human cells. Cell (2009) 3.27
A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks. Genome Biol (2005) 3.24
Gene expression signatures and small-molecule compounds link a protein kinase to Plasmodium falciparum motility. Nat Chem Biol (2008) 3.23
A gateway-compatible yeast one-hybrid system. Genome Res (2004) 3.23
A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity. Genes Dev (2008) 3.19
The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth. Nature (2011) 3.09
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Redundant function of REV-ERBalpha and beta and non-essential role for Bmal1 cycling in transcriptional regulation of intracellular circadian rhythms. PLoS Genet (2008) 3.07
LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms. Proc Natl Acad Sci U S A (2005) 3.04
A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell (2009) 3.02
Clocks not winding down: unravelling circadian networks. Nat Rev Mol Cell Biol (2010) 2.95
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Genetic structure and domestication history of the grape. Proc Natl Acad Sci U S A (2011) 2.89
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Critical role for CCA1 and LHY in maintaining circadian rhythmicity in Arabidopsis. Curr Biol (2002) 2.82
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TaVRT-1, a putative transcription factor associated with vegetative to reproductive transition in cereals. Plant Physiol (2003) 2.71
Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Res (2010) 2.71
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Cryptochrome mediates circadian regulation of cAMP signaling and hepatic gluconeogenesis. Nat Med (2010) 2.65
Bone marrow plasmacytoid dendritic cells can differentiate into myeloid dendritic cells upon virus infection. Nat Immunol (2004) 2.64
Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity. Genome Res (2008) 2.52
A novel computational model of the circadian clock in Arabidopsis that incorporates PRR7 and PRR9. Mol Syst Biol (2006) 2.48
Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages. Comp Funct Genomics (2005) 2.48
A chemical biology approach reveals period shortening of the mammalian circadian clock by specific inhibition of GSK-3beta. Proc Natl Acad Sci U S A (2008) 2.39
A single molecule scaffold for the maize genome. PLoS Genet (2009) 2.33
Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2007) 2.29
The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Res (2008) 2.28
A genome-wide characterization of microRNA genes in maize. PLoS Genet (2009) 2.23
Living by the calendar: how plants know when to flower. Nat Rev Mol Cell Biol (2003) 2.21
Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis. Plant Cell (2005) 2.21
Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor. Proc Natl Acad Sci U S A (2012) 2.19
Gramene: development and integration of trait and gene ontologies for rice. Comp Funct Genomics (2002) 2.16
A morning-specific phytohormone gene expression program underlying rhythmic plant growth. PLoS Biol (2008) 2.12
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Rapid array mapping of circadian clock and developmental mutations in Arabidopsis. Plant Physiol (2005) 2.07
Rapid genomic characterization of the genus vitis. PLoS One (2010) 2.04
CMap 1.01: a comparative mapping application for the Internet. Bioinformatics (2009) 2.03
Universality and flexibility in gene expression from bacteria to human. Proc Natl Acad Sci U S A (2004) 2.03
Differential expression of miRNAs in response to salt stress in maize roots. Ann Bot (2008) 2.01
PRR3 Is a vascular regulator of TOC1 stability in the Arabidopsis circadian clock. Plant Cell (2007) 1.97
Evolution of Arabidopsis microRNA families through duplication events. Genome Res (2006) 1.96
Identification of small molecule activators of cryptochrome. Science (2012) 1.95
Emergence of noise-induced oscillations in the central circadian pacemaker. PLoS Biol (2010) 1.94
A genomic analysis of the shade avoidance response in Arabidopsis. Plant Physiol (2003) 1.91
Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor binding to DNA in Caenorhabditis elegans. Nat Protoc (2008) 1.89
Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed. Proc Natl Acad Sci U S A (2013) 1.87
An expanding universe of circadian networks in higher plants. Trends Plant Sci (2010) 1.85