Published in Science on August 07, 2009
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One (2011) 15.19
Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet (2010) 8.75
The genetics of inbreeding depression. Nat Rev Genet (2009) 7.13
Genome-wide association study of leaf architecture in the maize nested association mapping population. Nat Genet (2011) 5.16
Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature (2011) 5.13
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Rice (N Y) (2013) 4.27
Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet (2010) 4.06
Comparative population genomics of maize domestication and improvement. Nat Genet (2012) 3.78
Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet (2012) 3.74
Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population. Nat Genet (2011) 3.51
TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline. PLoS One (2014) 3.45
A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome. PLoS One (2011) 3.30
Diversity and heritability of the maize rhizosphere microbiome under field conditions. Proc Natl Acad Sci U S A (2013) 2.88
Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol. PLoS Genet (2013) 2.83
Crop genomics: advances and applications. Nat Rev Genet (2011) 2.72
Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Res (2010) 2.71
Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome. PLoS One (2010) 2.59
Comprehensive genotyping of the USA national maize inbred seed bank. Genome Biol (2013) 2.46
Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize. Proc Natl Acad Sci U S A (2011) 2.38
The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato. Nat Genet (2010) 2.32
Molecular mechanisms of polyploidy and hybrid vigor. Trends Plant Sci (2010) 2.26
Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels. Plant Physiol (2011) 2.20
Natural variation in Arabidopsis: from molecular genetics to ecological genomics. Plant Physiol (2011) 2.06
Heterosis. Plant Cell (2010) 2.06
Genome-wide association studies in plants: the missing heritability is in the field. Genome Biol (2011) 1.93
Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana. Nat Rev Genet (2010) 1.91
A review of imaging techniques for plant phenotyping. Sensors (Basel) (2014) 1.91
Distinct genetic architectures for male and female inflorescence traits of maize. PLoS Genet (2011) 1.88
Epigenetic and genetic influences on DNA methylation variation in maize populations. Plant Cell (2013) 1.83
The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Res (2013) 1.78
NGS technologies for analyzing germplasm diversity in genebanks. Brief Funct Genomics (2012) 1.76
Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.). BMC Genomics (2010) 1.62
Properties and power of the Drosophila Synthetic Population Resource for the routine dissection of complex traits. Genetics (2012) 1.55
Heritable epigenetic variation among maize inbreds. PLoS Genet (2011) 1.54
Flapjack--graphical genotype visualization. Bioinformatics (2010) 1.52
Genetic dissection of a model complex trait using the Drosophila Synthetic Population Resource. Genome Res (2012) 1.51
ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize. Proc Natl Acad Sci U S A (2012) 1.49
Analysis of natural allelic variation in Arabidopsis using a multiparent recombinant inbred line population. Proc Natl Acad Sci U S A (2011) 1.44
Population structure in Japanese rice population. Breed Sci (2013) 1.42
Harvesting the promising fruits of genomics: applying genome sequencing technologies to crop breeding. PLoS Biol (2014) 1.42
The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82. Plant Physiol (2010) 1.42
The genetic architecture of maize height. Genetics (2014) 1.41
MaizeGDB: curation and outreach go hand-in-hand. Database (Oxford) (2011) 1.39
Joint QTL linkage mapping for multiple-cross mating design sharing one common parent. PLoS One (2011) 1.37
An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley. BMC Genomics (2014) 1.37
Intraspecific variation of recombination rate in maize. Genome Biol (2013) 1.32
MaizeGDB becomes 'sequence-centric'. Database (Oxford) (2009) 1.32
Lessons from Dwarf8 on the strengths and weaknesses of structured association mapping. PLoS Genet (2013) 1.30
Genetic incompatibilities are widespread within species. Nature (2013) 1.28
Genic and nongenic contributions to natural variation of quantitative traits in maize. Genome Res (2012) 1.26
Development of a 10,000 locus genetic map of the sunflower genome based on multiple crosses. G3 (Bethesda) (2012) 1.26
Can genomics boost productivity of orphan crops? Nat Biotechnol (2012) 1.24
Genetic control of photoperiod sensitivity in maize revealed by joint multiple population analysis. Genetics (2009) 1.20
B73-Mo17 near-isogenic lines demonstrate dispersed structural variation in maize. Plant Physiol (2011) 1.18
Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus. Nat Genet (2013) 1.17
The relationship between parental genetic or phenotypic divergence and progeny variation in the maize nested association mapping population. Heredity (Edinb) (2011) 1.16
Multivariate analysis of maize disease resistances suggests a pleiotropic genetic basis and implicates a GST gene. Proc Natl Acad Sci U S A (2011) 1.16
Comparison of biometrical models for joint linkage association mapping. Heredity (Edinb) (2011) 1.14
A combined linkage and regional association mapping validation and fine mapping of two major pleiotropic QTLs for seed weight and silique length in rapeseed (Brassica napus L.). BMC Plant Biol (2014) 1.10
Genome-wide association study and pathway-level analysis of tocochromanol levels in maize grain. G3 (Bethesda) (2013) 1.10
Natural variation in maize aphid resistance is associated with 2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one glucoside methyltransferase activity. Plant Cell (2013) 1.10
Construction of a high-density composite map and comparative mapping of segregation distortion regions in barley. Mol Genet Genomics (2010) 1.09
Entering the second century of maize quantitative genetics. Heredity (Edinb) (2013) 1.09
Association mapping across numerous traits reveals patterns of functional variation in maize. PLoS Genet (2014) 1.08
Facilitating discovery: the role of Society Journals in collaborative science. Genetics (2012) 1.07
Choosing a genome browser for a Model Organism Database: surveying the maize community. Database (Oxford) (2010) 1.07
Usefulness of multiparental populations of maize (Zea mays L.) for genome-based prediction. Genetics (2014) 1.07
Genome-wide association study identifies candidate genes that affect plant height in Chinese elite maize (Zea mays L.) inbred lines. PLoS One (2011) 1.06
The genetic architecture of maize stalk strength. PLoS One (2013) 1.03
High-density molecular characterization and association mapping in Ethiopian durum wheat landraces reveals high diversity and potential for wheat breeding. Plant Biotechnol J (2016) 1.02
Genome properties and prospects of genomic prediction of hybrid performance in a breeding program of maize. Genetics (2014) 1.02
Evolutionary studies illuminate the structural-functional model of plant phytochromes. Plant Cell (2010) 1.02
Australian wild rice reveals pre-domestication origin of polymorphism deserts in rice genome. PLoS One (2014) 1.02
Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays. Genome Biol (2015) 1.01
Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects. Theor Appl Genet (2014) 0.98
Diverse approaches to achieving grain yield in wheat. Funct Integr Genomics (2011) 0.98
Fine quantitative trait loci mapping of carbon and nitrogen metabolism enzyme activities and seedling biomass in the maize IBM mapping population. Plant Physiol (2010) 0.97
Efficient imputation of missing markers in low-coverage genotyping-by-sequencing data from multiparental crosses. Genetics (2014) 0.96
Complex-trait analysis in plants. Genome Biol (2010) 0.96
Genome-wide association study reveals the genetic architecture of flowering time in rapeseed (Brassica napus L.). DNA Res (2015) 0.96
Genetic and physiological analysis of iron biofortification in maize kernels. PLoS One (2011) 0.96
Recombination in diverse maize is stable, predictable, and associated with genetic load. Proc Natl Acad Sci U S A (2015) 0.96
Bioenergy grass feedstock: current options and prospects for trait improvement using emerging genetic, genomic, and systems biology toolkits. Biotechnol Biofuels (2012) 0.94
Gene and QTL detection in a three-way barley cross under selection by a mixed model with kinship information using SNPs. Theor Appl Genet (2011) 0.94
Genomics reveals new landscapes for crop improvement. Genome Biol (2013) 0.93
Tomato yield heterosis is triggered by a dosage sensitivity of the florigen pathway that fine-tunes shoot architecture. PLoS Genet (2013) 0.93
Joint-multiple family linkage analysis predicts within-family variation better than single-family analysis of the maize nested association mapping population. Heredity (Edinb) (2015) 0.93
Linkage disequilibrium with linkage analysis of multiline crosses reveals different multiallelic QTL for hybrid performance in the flint and dent heterotic groups of maize. Genetics (2014) 0.93
Optimum design of family structure and allocation of resources in association mapping with lines from multiple crosses. Heredity (Edinb) (2012) 0.93
High-resolution genetic mapping of maize pan-genome sequence anchors. Nat Commun (2015) 0.92
From genomics to crop breeding. Nat Biotechnol (2010) 0.91
Insights into the effects of long-term artificial selection on seed size in maize. Genetics (2014) 0.91
Comparison of mating designs for establishing nested association mapping populations in maize and Arabidopsis thaliana. Genetics (2009) 0.91
Genetic dissection of the Drosophila melanogaster female head transcriptome reveals widespread allelic heterogeneity. PLoS Genet (2014) 0.91
Dissecting complex traits using the Drosophila Synthetic Population Resource. Trends Genet (2014) 0.90
Legume genomics: understanding biology through DNA and RNA sequencing. Ann Bot (2014) 0.90
Crop plants as models for understanding plant adaptation and diversification. Front Plant Sci (2013) 0.90
Improved optimization for the robust and accurate linear registration and motion correction of brain images. Neuroimage (2002) 38.46
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet (2005) 20.97
The B73 maize genome: complexity, diversity, and dynamics. Science (2009) 18.73
Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. Nat Genet (2010) 16.96
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One (2011) 15.19
TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics (2007) 14.95
The Sorghum bicolor genome and the diversification of grasses. Nature (2009) 14.62
RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia. Nature (2011) 11.44
Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes. Nat Genet (2012) 11.09
The genetic architecture of maize flowering time. Science (2009) 9.27
Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet (2010) 8.75
Mixed linear model approach adapted for genome-wide association studies. Nat Genet (2010) 8.47
Using Nonmedically Trained Interviewers to Collect Biomeasures in a National In-Home Survey. Field methods (2009) 8.24
A first-generation haplotype map of maize. Science (2009) 6.82
Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res (2002) 6.65
Structure of linkage disequilibrium in plants. Annu Rev Plant Biol (2003) 5.87
Secreted monocytic miR-150 enhances targeted endothelial cell migration. Mol Cell (2010) 5.77
Creating, monitoring, and improving a psychiatry OSCE: a guide for faculty. Acad Psychiatry (2002) 5.26
Genome-wide association study of leaf architecture in the maize nested association mapping population. Nat Genet (2011) 5.16
Statistical design and estimation for the national social life, health, and aging project. J Gerontol B Psychol Sci Soc Sci (2009) 5.01
Genetic design and statistical power of nested association mapping in maize. Genetics (2008) 4.92
Meta-analysis of prospective cohort studies evaluating the association of saturated fat with cardiovascular disease. Am J Clin Nutr (2010) 4.85
Depression and risk of stroke morbidity and mortality: a meta-analysis and systematic review. JAMA (2011) 4.75
Red meat consumption and mortality: results from 2 prospective cohort studies. Arch Intern Med (2012) 4.72
Association mapping: critical considerations shift from genotyping to experimental design. Plant Cell (2009) 4.59
Gramene: a growing plant comparative genomics resource. Nucleic Acids Res (2007) 4.59
Maize association population: a high-resolution platform for quantitative trait locus dissection. Plant J (2005) 4.59
The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Front Plant Sci (2011) 4.16
Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility. Nat Genet (2014) 4.13
Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain. PLoS One (2008) 4.03
The developmental dynamics of the maize leaf transcriptome. Nat Genet (2010) 4.02
Rotating night shift work and risk of type 2 diabetes: two prospective cohort studies in women. PLoS Med (2011) 3.88
White rice consumption and risk of type 2 diabetes: meta-analysis and systematic review. BMJ (2012) 3.82
Comparative population genomics of maize domestication and improvement. Nat Genet (2012) 3.78
Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet (2012) 3.74
Immunologic and prognostic factors associated with overall survival employing a poxviral-based PSA vaccine in metastatic castrate-resistant prostate cancer. Cancer Immunol Immunother (2009) 3.70
Bidirectional association between depression and type 2 diabetes mellitus in women. Arch Intern Med (2010) 3.66
GAPIT: genome association and prediction integrated tool. Bioinformatics (2012) 3.66
Major dietary protein sources and risk of coronary heart disease in women. Circulation (2010) 3.65
A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics (2008) 3.57
Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites. Genetics (2003) 3.57
Bidirectional association between depression and metabolic syndrome: a systematic review and meta-analysis of epidemiological studies. Diabetes Care (2012) 3.53
Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population. Nat Genet (2011) 3.51
Gramene: a bird's eye view of cereal genomes. Nucleic Acids Res (2006) 3.47
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. PLoS One (2008) 3.41
Genetic association mapping and genome organization of maize. Curr Opin Biotechnol (2006) 3.34
A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome. PLoS One (2011) 3.30
Red meat consumption and risk of type 2 diabetes: 3 cohorts of US adults and an updated meta-analysis. Am J Clin Nutr (2011) 3.27
Genetic variants at 2q24 are associated with susceptibility to type 2 diabetes. Hum Mol Genet (2010) 3.24
Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals. PLoS Genet (2012) 3.21
Genetic diversity and selection in the maize starch pathway. Proc Natl Acad Sci U S A (2002) 3.20
Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers. PLoS One (2009) 3.17
Randomized phase II trial of docetaxel plus thalidomide in androgen-independent prostate cancer. J Clin Oncol (2004) 3.16
Inequalities in participation in an organized national colorectal cancer screening programme: results from the first 2.6 million invitations in England. Int J Epidemiol (2011) 3.11
Ensembl Genomes 2013: scaling up access to genome-wide data. Nucleic Acids Res (2013) 3.08
Changes in red meat consumption and subsequent risk of type 2 diabetes mellitus: three cohorts of US men and women. JAMA Intern Med (2013) 3.06
Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification. Science (2008) 3.06
Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs). Proc Natl Acad Sci U S A (2008) 2.92
Genetic structure and domestication history of the grape. Proc Natl Acad Sci U S A (2011) 2.89