A model for the effect of homologous recombination on microbial diversification.

PubWeight™: 0.86‹?›

🔗 View Article (PMC 3240962)

Published in Genome Biol Evol on November 09, 2011

Authors

James R Doroghazi1, Daniel H Buckley

Author Affiliations

1: Department of Microbiology, Cornell University, Ithaca, New York, USA.

Articles cited by this

Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics (2002) 34.50

Evolutionary rate at the molecular level. Nature (1968) 33.15

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol (2002) 11.02

Homologous recombination in Escherichia coli: dependence on substrate length and homology. Genetics (1986) 7.97

Opinion: Re-evaluating prokaryotic species. Nat Rev Microbiol (2005) 7.19

What are bacterial species? Annu Rev Microbiol (2002) 6.07

Recombination and mutation during long-term gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age. Proc Natl Acad Sci U S A (2001) 4.80

The bacterial species definition in the genomic era. Philos Trans R Soc Lond B Biol Sci (2006) 4.47

Recombination and the nature of bacterial speciation. Science (2007) 3.98

Microbial diversity and the genetic nature of microbial species. Nat Rev Microbiol (2008) 3.89

A comparison of homologous recombination rates in bacteria and archaea. ISME J (2008) 3.29

Molecular keys to speciation: DNA polymorphism and the control of genetic exchange in enterobacteria. Proc Natl Acad Sci U S A (1997) 2.90

The bacterial species challenge: making sense of genetic and ecological diversity. Science (2009) 2.88

Sequence typing and comparison of population biology of Campylobacter coli and Campylobacter jejuni. J Clin Microbiol (2005) 2.88

Hyper-recombination, diversity, and antibiotic resistance in pneumococcus. Science (2009) 2.54

Convergence of Campylobacter species: implications for bacterial evolution. Science (2008) 2.42

Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation. J Bacteriol (2000) 2.21

A systematics for discovering the fundamental units of bacterial diversity. Curr Biol (2007) 2.19

Estimating the relative contributions of mutation and recombination to clonal diversification: a comparison between Neisseria meningitidis and Streptococcus pneumoniae. Res Microbiol (2000) 2.14

Mismatch induced speciation in Salmonella: model and data. Philos Trans R Soc Lond B Biol Sci (2006) 2.11

The synapsis event in the homologous pairing of DNAs: RecA recognizes and pairs less than one helical repeat of DNA. Proc Natl Acad Sci U S A (1992) 2.03

The log-linear relationship between sexual isolation and sequence divergence in Bacillus transformation is robust. Genetics (1995) 2.00

DNA sequence similarity requirements for interspecific recombination in Bacillus. Genetics (1999) 1.81

Exploring population genetic models with recombination using efficient forward-time simulations. Genetics (2008) 1.72

Temporal fragmentation of speciation in bacteria. Science (2007) 1.57

Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept. Genome Biol Evol (2010) 1.54

Recombination in Thermotoga: implications for species concepts and biogeography. Genetics (2005) 1.50

Adapt globally, act locally: the effect of selective sweeps on bacterial sequence diversity. Genetics (1999) 1.47

Local mobile gene pools rapidly cross species boundaries to create endemicity within global Vibrio cholerae populations. MBio (2011) 1.47

Genetic exchange across a species boundary in the archaeal genus ferroplasma. Genetics (2007) 1.35

Allopatric origins of microbial species. Philos Trans R Soc Lond B Biol Sci (2006) 1.25

Looking for Darwin's footprints in the microbial world. Trends Microbiol (2009) 1.22

The population and evolutionary dynamics of homologous gene recombination in bacterial populations. PLoS Genet (2009) 1.12

Global divergence of microbial genome sequences mediated by propagating fronts. Proc Natl Acad Sci U S A (2005) 1.04

Uptake and processing of duplex DNA by RecA nucleoprotein filaments: insights provided by a mixed population of dynamic and static intermediates. Biochemistry (1995) 1.01

Genomic insights into the convergence and pathogenicity factors of Campylobacter jejuni and Campylobacter coli species. J Bacteriol (2009) 0.97

Expanded multilocus sequence typing and comparative genomic hybridization of Campylobacter coli isolates from multiple hosts. Appl Environ Microbiol (2010) 0.96

RecA protein mediates homologous recognition via non-Watson-Crick bonds in base triplets. Philos Trans R Soc Lond B Biol Sci (1995) 0.79

Articles by these authors

T-REX: software for the processing and analysis of T-RFLP data. BMC Bioinformatics (2009) 2.24

Evidence for the functional significance of diazotroph community structure in soil. ISME J (2008) 1.51

A comprehensive evaluation of PCR primers to amplify the nifH gene of nitrogenase. PLoS One (2012) 1.45

Widespread homologous recombination within and between Streptomyces species. ISME J (2010) 1.16

Environmental patterns are imposed on the population structure of Escherichia coli after fecal deposition. Appl Environ Microbiol (2010) 1.07

Agricultural management and labile carbon additions affect soil microbial community structure and interact with carbon and nitrogen cycling. Microb Ecol (2013) 1.05

Microbial diversity in modern marine stromatolites, Highborne Cay, Bahamas. Environ Microbiol (2009) 1.03

Dimethyl sulphide and methanethiol formation in microbial mats: potential pathways for biogenic signatures. Environ Microbiol (2003) 1.02

A global census of nitrogenase diversity. Environ Microbiol (2011) 0.98

A comprehensive aligned nifH gene database: a multipurpose tool for studies of nitrogen-fixing bacteria. Database (Oxford) (2014) 0.90

Ideonella azotifigens sp. nov., an aerobic diazotroph of the Betaproteobacteria isolated from grass rhizosphere soil, and emended description of the genus Ideonella. Int J Syst Evol Microbiol (2009) 0.87

Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh. Environ Microbiol (2014) 0.87

Millimeter-scale patterns of phylogenetic and trait diversity in a salt marsh microbial mat. Front Microbiol (2012) 0.85

Microbial species richness and metabolic activities in hypersaline microbial mats: insight into biosignature formation through lithification. Astrobiology (2009) 0.85

Multicellular photo-magnetotactic bacteria. Environ Microbiol Rep (2010) 0.82

Grappling with Proteus: population level approaches to understanding microbial diversity. Front Microbiol (2012) 0.81

Intra-genomic variation in G + C content and its implications for DNA stable isotope probing. Environ Microbiol Rep (2014) 0.81

Classification of Streptomyces phylogroup pratensis (Doroghazi and Buckley, 2010) based on genetic and phenotypic evidence, and proposal of Streptomyces pratensis sp. nov. Syst Appl Microbiol (2013) 0.80

Evidence from GC-TRFLP that bacterial communities in soil are lognormally distributed. PLoS One (2008) 0.78

Roadside ditches as conduits of fecal indicator organisms and sediment: implications for water quality management. J Environ Manage (2013) 0.76