Published in Environ Microbiol on July 06, 2009
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Metagenomic and metabolic profiling of nonlithifying and lithifying stromatolitic mats of Highborne Cay, The Bahamas. PLoS One (2012) 0.99
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Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci U S A (2007) 20.60
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat. Appl Environ Microbiol (2006) 4.74
Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases. Cell Host Microbe (2008) 4.14
Molecular identification of bacteria in bronchoalveolar lavage fluid from children with cystic fibrosis. Proc Natl Acad Sci U S A (2007) 4.06
Hydrogen and bioenergetics in the Yellowstone geothermal ecosystem. Proc Natl Acad Sci U S A (2005) 3.83
The genetic core of the universal ancestor. Genome Res (2003) 3.82
Opportunistic pathogens enriched in showerhead biofilms. Proc Natl Acad Sci U S A (2009) 3.35
Gastrointestinal microbiology enters the metagenomics era. Curr Opin Gastroenterol (2008) 3.08
Novel kingdom-level eukaryotic diversity in anoxic environments. Proc Natl Acad Sci U S A (2002) 2.88
Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature (2008) 2.70
Disease phenotype and genotype are associated with shifts in intestinal-associated microbiota in inflammatory bowel diseases. Inflamm Bowel Dis (2010) 2.62
The human nasal microbiota and Staphylococcus aureus carriage. PLoS One (2010) 2.50
T-REX: software for the processing and analysis of T-RFLP data. BMC Bioinformatics (2009) 2.24
An open letter to Elias Zerhouni. Science (2005) 2.19
Bacterial RNase P: a new view of an ancient enzyme. Nat Rev Microbiol (2006) 2.17
Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat. Mol Syst Biol (2008) 2.12
Crystal structure of a bacterial ribonuclease P RNA. Proc Natl Acad Sci U S A (2005) 2.01
Microbial lithification in marine stromatolites and hypersaline mats. Trends Microbiol (2005) 1.91
Structural perspective on the activation of RNAse P RNA by protein. Nat Struct Mol Biol (2005) 1.87
RNase P: interface of the RNA and protein worlds. Trends Biochem Sci (2006) 1.85
Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition. PLoS One (2012) 1.82
Geobiology of a microbial endolithic community in the Yellowstone geothermal environment. Nature (2005) 1.69
Phylogenetic diversity and ecology of environmental Archaea. Curr Opin Microbiol (2005) 1.62
Altered vaginal microbiota are associated with perinatal mother-to-child transmission of HIV in African women from Burkina Faso. J Acquir Immune Defic Syndr (2012) 1.60
Microbial diversity of cryptoendolithic communities from the McMurdo Dry Valleys, Antarctica. Appl Environ Microbiol (2003) 1.56
Molecular identification of potential pathogens in water and air of a hospital therapy pool. Proc Natl Acad Sci U S A (2005) 1.55
Composition and structure of microbial communities from stromatolites of Hamelin Pool in Shark Bay, Western Australia. Appl Environ Microbiol (2005) 1.52
Evidence for the functional significance of diazotroph community structure in soil. ISME J (2008) 1.51
Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat. ISME J (2012) 1.51
Culture-independent molecular analysis of microbial constituents of the healthy human outer ear. J Clin Microbiol (2003) 1.46
A comprehensive evaluation of PCR primers to amplify the nifH gene of nitrogenase. PLoS One (2012) 1.45
Bacterial diversity and sulfur cycling in a mesophilic sulfide-rich spring. Appl Environ Microbiol (2003) 1.44
Culture-independent analysis of indomethacin-induced alterations in the rat gastrointestinal microbiota. Appl Environ Microbiol (2006) 1.42
Complexity in natural microbial ecosystems: the Guerrero Negro experience. Biol Bull (2003) 1.41
Molecular analysis of shower curtain biofilm microbes. Appl Environ Microbiol (2004) 1.41
Microbial diversity in chronic open wounds. Wound Repair Regen (2009) 1.39
Protein activation of a ribozyme: the role of bacterial RNase P protein. EMBO J (2005) 1.38
Subsurface microbial diversity in deep-granitic-fracture water in Colorado. Appl Environ Microbiol (2007) 1.38
Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data. Bioinformatics (2013) 1.38
Microbial composition of near-boiling silica-depositing thermal springs throughout Yellowstone National Park. Appl Environ Microbiol (2002) 1.30
Comparison of normalization methods for construction of large, multiplex amplicon pools for next-generation sequencing. Appl Environ Microbiol (2010) 1.25
Structural implications of novel diversity in eucaryal RNase P RNA. RNA (2005) 1.25
High-resolution structure of RNase P protein from Thermotoga maritima. Proc Natl Acad Sci U S A (2003) 1.23
Culture-independent analysis of aerosol microbiology in a metropolitan subway system. Appl Environ Microbiol (2013) 1.22
Lactobacillus rhamnosus GG bacteremia associated with probiotic use in a child with short gut syndrome. Pediatr Infect Dis J (2005) 1.20
Microbial community biofabrics in a geothermal mine adit. Appl Environ Microbiol (2007) 1.19
Exopolymeric substances (EPS) from Bacillus subtilis: polymers and genes encoding their synthesis. FEMS Microbiol Lett (2010) 1.18
Widespread homologous recombination within and between Streptomyces species. ISME J (2010) 1.16
Molecular and morphological characterization of cyanobacterial diversity in the stromatolites of Highborne Cay, Bahamas. ISME J (2009) 1.14
Diversity and stratification of archaea in a hypersaline microbial mat. Appl Environ Microbiol (2008) 1.14
Polyphosphate kinase from activated sludge performing enhanced biological phosphorus removal. Appl Environ Microbiol (2002) 1.13
Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA. RNA (2008) 1.09
Eucaryotic diversity in a hypersaline microbial mat. Appl Environ Microbiol (2007) 1.09
Structure and function of eukaryotic Ribonuclease P RNA. Mol Cell (2006) 1.08
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Environmental patterns are imposed on the population structure of Escherichia coli after fecal deposition. Appl Environ Microbiol (2010) 1.07
Autoinducers extracted from microbial mats reveal a surprising diversity of N-acylhomoserine lactones (AHLs) and abundance changes that may relate to diel pH. Environ Microbiol (2009) 1.07
Relationships between Mycobacterium isolates from patients with pulmonary mycobacterial infection and potting soils. Appl Environ Microbiol (2006) 1.06
Agricultural management and labile carbon additions affect soil microbial community structure and interact with carbon and nitrogen cycling. Microb Ecol (2013) 1.05
Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry. Front Microbiol (2013) 1.05
Culture-independent microbiological analysis of foley urinary catheter biofilms. PLoS One (2009) 1.04
[FeFe]-hydrogenase in Yellowstone National Park: evidence for dispersal limitation and phylogenetic niche conservatism. ISME J (2010) 1.04
Dimethyl sulphide and methanethiol formation in microbial mats: potential pathways for biogenic signatures. Environ Microbiol (2003) 1.02
Phylogenetic composition of Rocky Mountain endolithic microbial ecosystems. Appl Environ Microbiol (2007) 1.02
Characteristics and turnover of exopolymeric substances in a hypersaline microbial mat. FEMS Microbiol Ecol (2008) 1.01
Quorum sensing in natural environments: emerging views from microbial mats. Trends Microbiol (2010) 1.01
Novel device to sample the esophageal microbiome--the esophageal string test. PLoS One (2012) 1.00
[FeFe] hydrogenase genetic diversity provides insight into molecular adaptation in a saline microbial mat community. Appl Environ Microbiol (2009) 1.00
Solution structure of RNase P RNA. RNA (2011) 0.99
Contrasting patterns of community assembly in the stratified water column of Great Salt Lake, Utah. Microb Ecol (2013) 0.99
A global census of nitrogenase diversity. Environ Microbiol (2011) 0.98
Novel microbial diversity retrieved by autonomous robotic exploration of the world's deepest vertical phreatic sinkhole. Astrobiology (2010) 0.93
Vertical distribution of methane metabolism in microbial mats of the Great Sippewissett Salt Marsh. Environ Microbiol (2008) 0.92
Physiological requirements for carbonate precipitation during biofilm development of Bacillus subtilis etfA mutant. FEMS Microbiol Ecol (2009) 0.92
Comparative molecular analysis of endoevaporitic microbial communities. Appl Environ Microbiol (2008) 0.91
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A comprehensive aligned nifH gene database: a multipurpose tool for studies of nitrogen-fixing bacteria. Database (Oxford) (2014) 0.90
Community and cultivation analysis of arsenite oxidizing biofilms at Hot Creek. Environ Microbiol (2006) 0.89
Use of specific rRNA oligonucleotide probes for microscopic detection of Mycobacterium tuberculosis in culture and tissue specimens. J Clin Microbiol (2005) 0.89
Cyanobacterial construction of hot spring siliceous stromatolites in Yellowstone National Park. Environ Microbiol (2012) 0.88
Use of specific rRNA oligonucleotide probes for microscopic detection of Mycobacterium avium complex organisms in tissue. J Clin Microbiol (2005) 0.88
Expression, purification, crystallization and preliminary diffraction analysis of RNase P protein from Thermotoga maritima. Acta Crystallogr D Biol Crystallogr (2002) 0.88
Phototrophic phylotypes dominate mesothermal microbial mats associated with hot springs in Yellowstone National Park. Microb Ecol (2012) 0.88
Ideonella azotifigens sp. nov., an aerobic diazotroph of the Betaproteobacteria isolated from grass rhizosphere soil, and emended description of the genus Ideonella. Int J Syst Evol Microbiol (2009) 0.87
Low bone mineral density and risk of incident fracture in HIV-infected adults. Antivir Ther (2015) 0.87
Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh. Environ Microbiol (2014) 0.87
Differences in lateral gene transfer in hypersaline versus thermal environments. BMC Evol Biol (2011) 0.87