Published in Evol Bioinform Online on November 01, 2011
Using Nonlinear Stochastic Evolutionary Game Strategy to Model an Evolutionary Biological Network of Organ Carcinogenesis Under a Natural Selection Scheme. Evol Bioinform Online (2015) 0.80
A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Trade-off on Phenotype Robustness in Biological Networks Part I: Gene Regulatory Networks in Systems and Evolutionary Biology. Evol Bioinform Online (2013) 0.78
A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Tradeoff on Phenotype Robustness in Biological Networks Part II: Ecological Networks. Evol Bioinform Online (2013) 0.78
A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Trade-offs on Phenotype Robustness in Biological Networks. Part III: Synthetic Gene Networks in Synthetic Biology. Evol Bioinform Online (2013) 0.78
Female mating preferences determine system-level evolution in a gene network model. Genetica (2013) 0.75
From molecular to modular cell biology. Nature (1999) 23.51
Global mapping of the yeast genetic interaction network. Science (2004) 21.34
Systems biology: a brief overview. Science (2002) 14.69
Stochasticity in gene expression: from theories to phenotypes. Nat Rev Genet (2005) 14.39
Biological robustness. Nat Rev Genet (2004) 9.98
The segment polarity network is a robust developmental module. Nature (2000) 9.28
The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Science (2008) 8.52
A new approach to decoding life: systems biology. Annu Rev Genomics Hum Genet (2001) 7.79
It's a noisy business! Genetic regulation at the nanomolar scale. Trends Genet (1999) 7.09
Protein function in the post-genomic era. Nature (2000) 7.00
A synthetic multicellular system for programmed pattern formation. Nature (2005) 6.93
A DNA integrity network in the yeast Saccharomyces cerevisiae. Cell (2006) 6.61
Engineered gene circuits. Nature (2002) 6.25
Optimality and evolutionary tuning of the expression level of a protein. Nature (2005) 5.94
Prediction and measurement of an autoregulatory genetic module. Proc Natl Acad Sci U S A (2003) 5.07
Programmable cells: interfacing natural and engineered gene networks. Proc Natl Acad Sci U S A (2004) 4.72
Detailed map of a cis-regulatory input function. Proc Natl Acad Sci U S A (2003) 4.30
Perspective: Evolution and detection of genetic robustness. Evolution (2003) 4.10
Feedback control of intercellular signalling in development. Nature (2000) 4.04
A global view of pleiotropy and phenotypically derived gene function in yeast. Mol Syst Biol (2005) 3.70
Canalization in evolutionary genetics: a stabilizing theory? Bioessays (2000) 3.62
Spatiotemporal control of gene expression with pulse-generating networks. Proc Natl Acad Sci U S A (2004) 3.61
Robustness analysis of the Escherichia coli metabolic network. Biotechnol Prog (2000) 3.40
Robustness and evolvability: a paradox resolved. Proc Biol Sci (2008) 3.08
High-dimensional and large-scale phenotyping of yeast mutants. Proc Natl Acad Sci U S A (2005) 2.90
Evolution of transcription factors and the gene regulatory network in Escherichia coli. Nucleic Acids Res (2003) 2.87
Stress-induced variation in evolution: from behavioural plasticity to genetic assimilation. Proc Biol Sci (2005) 2.68
Network hubs buffer environmental variation in Saccharomyces cerevisiae. PLoS Biol (2008) 2.47
Evolutionary dynamics of prokaryotic transcriptional regulatory networks. J Mol Biol (2006) 2.44
Synthetic gene network for entraining and amplifying cellular oscillations. Phys Rev Lett (2002) 2.24
Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns. Proc Natl Acad Sci U S A (2006) 2.21
Mutational robustness can facilitate adaptation. Nature (2010) 2.17
Convergent evolution of gene circuits. Nat Genet (2003) 1.89
Robustness and evolution: concepts, insights and challenges from a developmental model system. Heredity (Edinb) (2006) 1.75
The engineering of gene regulatory networks. Annu Rev Biomed Eng (2003) 1.73
Balancing robustness and evolvability. PLoS Biol (2006) 1.64
Systems biology: integrating technology, biology, and computation. Mech Ageing Dev (2003) 1.63
Variability and robustness in biomolecular systems. Mol Cell (2007) 1.61
Messy biology and the origins of evolutionary innovations. Nat Chem Biol (2010) 1.61
Evolutionary optimization with data collocation for reverse engineering of biological networks. Bioinformatics (2004) 1.47
Intrinsic noise, dissipation cost, and robustness of cellular networks: the underlying energy landscape of MAPK signal transduction. Proc Natl Acad Sci U S A (2008) 1.43
Genes confer similar robustness to environmental, stochastic, and genetic perturbations in yeast. PLoS One (2010) 1.36
Aging, tumor suppression and cancer: high wire-act! Mech Ageing Dev (2005) 1.32
Evolution of transcriptional regulatory networks in microbial genomes. Curr Opin Struct Biol (2006) 1.30
Robustness analysis and tuning of synthetic gene networks. Bioinformatics (2007) 1.24
An entropic mechanism to generate highly cooperative and specific binding from protein phosphorylations. Curr Biol (2006) 1.24
Inference of biochemical network models in S-system using multiobjective optimization approach. Bioinformatics (2008) 1.14
A new measure of the robustness of biochemical networks. Bioinformatics (2005) 1.13
Congruent evolution of genetic and environmental robustness in micro-RNA. Mol Biol Evol (2009) 1.07
Evolutionary aspects of whole-genome biology. Curr Opin Struct Biol (2005) 1.04
On the attenuation and amplification of molecular noise in genetic regulatory networks. BMC Bioinformatics (2006) 1.04
Adaptive evolution by optimizing expression levels in different environments. Trends Microbiol (2005) 1.02
Robust H infinity-stabilization design in gene networks under stochastic molecular noises: fuzzy-interpolation approach. IEEE Trans Syst Man Cybern B Cybern (2008) 0.95
Biological robustness in complex host-pathogen systems. Prog Drug Res (2007) 0.95
Robust filtering circuit design for stochastic gene networks under intrinsic and extrinsic molecular noises. Math Biosci (2007) 0.95
GA-based Design Algorithms for the Robust Synthetic Genetic Oscillators with Prescribed Amplitude, Period and Phase. Gene Regul Syst Bio (2010) 0.95
Entropy of complex relevant components of Boolean networks. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 0.94
Robust synthetic biology design: stochastic game theory approach. Bioinformatics (2009) 0.94
A systematic design method for robust synthetic biology to satisfy design specifications. BMC Syst Biol (2009) 0.94
Design principles and operating principles: the yin and yang of optimal functioning. Math Biosci (2003) 0.94
On the adaptive design rules of biochemical networks in evolution. Evol Bioinform Online (2007) 0.92
Robust design of biological circuits: evolutionary systems biology approach. J Biomed Biotechnol (2011) 0.91
Robust engineered circuit design principles for stochastic biochemical networks with parameter uncertainties and disturbances. IEEE Trans Biomed Circuits Syst (2008) 0.91
A systematic molecular circuit design method for gene networks under biochemical time delays and molecular noises. BMC Syst Biol (2008) 0.88
Underlying principles of natural selection in network evolution: systems biology approach. Evol Bioinform Online (2007) 0.85
Robust control of uncertain context-sensitive probabilistic Boolean networks. IET Syst Biol (2009) 0.84
On the estimation of robustness and filtering ability of dynamic biochemical networks under process delays, internal parametric perturbations and external disturbances. Math Biosci (2009) 0.83
Robust synthetic gene network design via library-based search method. Bioinformatics (2011) 0.83
Representing perturbed dynamics in biological network models. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 0.82
Stochastic spatio-temporal dynamic model for gene/protein interaction network in early Drosophila development. Gene Regul Syst Bio (2009) 0.80
A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Trade-off on Phenotype Robustness in Biological Networks Part I: Gene Regulatory Networks in Systems and Evolutionary Biology. Evol Bioinform Online (2013) 0.78
A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Trade-offs on Phenotype Robustness in Biological Networks. Part III: Synthetic Gene Networks in Synthetic Biology. Evol Bioinform Online (2013) 0.78
A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Tradeoff on Phenotype Robustness in Biological Networks Part II: Ecological Networks. Evol Bioinform Online (2013) 0.78