Published in Environ Sci Technol on December 27, 2011
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Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol (2005) 31.06
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Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes. Science (2005) 3.10
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Detoxification of vinyl chloride to ethene coupled to growth of an anaerobic bacterium. Nature (2003) 2.67
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Chlorinated solvents in groundwater of the United States. Environ Sci Technol (2007) 2.49
Field demonstration of successful bioaugmentation to achieve dechlorination of tetrachloroethene to ethene. Environ Sci Technol (2002) 2.13
Molecular identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distribution. Appl Environ Microbiol (2004) 2.06
Molecular analysis of Dehalococcoides 16S ribosomal DNA from chloroethene-contaminated sites throughout North America and Europe. Appl Environ Microbiol (2002) 2.03
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Selective progressive response of soil microbial community to wild oat roots. ISME J (2008) 1.87
Quantitative PCR confirms purity of strain GT, a novel trichloroethene-to-ethene-respiring Dehalococcoides isolate. Appl Environ Microbiol (2006) 1.79
Isolation and characterization of Dehalococcoides sp. strain FL2, a trichloroethene (TCE)- and 1,2-dichloroethene-respiring anaerobe. Environ Microbiol (2005) 1.78
Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides. PLoS Genet (2009) 1.61
Methanogenesis from acetate: a nonmethanogenic bacterium from an anaerobic acetate enrichment. Appl Environ Microbiol (1978) 1.53
A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells. ISME J (2008) 1.48
Harnessing microbial activities for environmental cleanup. Curr Opin Biotechnol (2006) 1.46
Phylogenetic characterization of microbial communities that reductively dechlorinate TCE based upon a combination of molecular techniques. Environ Sci Technol (2002) 1.35
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PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip. Appl Environ Microbiol (2011) 1.32
Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp. Appl Environ Microbiol (2006) 1.25
Microbial composition of chlorinated ethene-degrading cultures dominated by Dehalococcoides. FEMS Microbiol Ecol (2006) 1.24
Quantifying genes and transcripts to assess the in situ physiology of "Dehalococcoides" spp. in a trichloroethene-contaminated groundwater site. Appl Environ Microbiol (2008) 1.13
Molecular characterization of a dechlorinating community resulting from in situ biostimulation in a trichloroethene-contaminated deep, fractured basalt aquifer and comparison to a derivative laboratory culture. Appl Environ Microbiol (2004) 1.10
Isolation and characterization of "Dehalococcoides" sp. strain MB, which dechlorinates tetrachloroethene to trans-1,2-dichloroethene. Appl Environ Microbiol (2009) 1.07
Analysis and comparison of the microbial community structures of two enrichment cultures capable of reductively dechlorinating TCE and cis-DCE. Environ Microbiol (2004) 1.04
Exploiting the ecogenomics toolbox for environmental diagnostics of organohalide-respiring bacteria. Trends Biotechnol (2010) 1.03
Phylogenetic analysis of TCE-dechlorinating consortia enriched on a variety of electron donors. Environ Sci Technol (2005) 0.97
Phylogenetic analysis of bacterial populations in an anaerobic microbial consortium capable of degrading saturation concentrations of tetrachloroethylene. Can J Microbiol (2003) 0.96
Further biogeochemical characterization of a trichloroethene-contaminated fractured dolomite aquifer: electron source and microbial communities involved in reductive dechlorination. Environ Sci Technol (2001) 0.94
Comparative analysis of three tetrachloroethene to ethene halorespiring consortia suggests functional redundancy. Environ Sci Technol (2007) 0.93
Molecular characterization of microbial populations at two sites with differing reductive dechlorination abilities. Biodegradation (2006) 0.91
Bacterial diversity of an acidic Louisiana groundwater contaminated by dense nonaqueous-phase liquid containing chloroethanes and other solvents. FEMS Microbiol Ecol (2006) 0.89
Identification of microorganisms involved in reductive dehalogenation of chlorinated ethenes in an anaerobic microbial community. Water Res (2005) 0.85
Geochemistry and microbial diversity of a trichloroethene-contaminated Superfund site undergoing intrinsic in situ reductive dechlorination. FEMS Microbiol Ecol (2002) 0.83
Characterization of the community structure of a dechlorinating mixed culture and comparisons of gene expression in planktonic and biofloc-associated "Dehalococcoides" and Methanospirillum species. Appl Environ Microbiol (2008) 0.83
Comparative phylogenetic microarray analysis of microbial communities in TCE-contaminated soils. Chemosphere (2010) 0.77
Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell (2009) 20.29
PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics (2009) 15.93
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J (2011) 13.64
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Res (2008) 9.09
Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science (2010) 6.73
Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science (2011) 5.89
High-density microarray of small-subunit ribosomal DNA probes. Appl Environ Microbiol (2002) 4.95
High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb Ecol (2007) 4.81
Urban aerosols harbor diverse and dynamic bacterial populations. Proc Natl Acad Sci U S A (2006) 4.62
Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma. J Allergy Clin Immunol (2010) 4.38
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol (2006) 4.09
Development of a high-volume aerosol collection system for the identification of air-borne micro-organisms. Lett Appl Microbiol (2002) 4.02
Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray. FEMS Microbiol Lett (2005) 3.42
Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients. PLoS One (2010) 3.38
Chronic kidney disease alters intestinal microbial flora. Kidney Int (2012) 2.58
Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa. Environ Microbiol (2010) 2.55
Comparative analyses of the bacterial microbiota of the human nostril and oropharynx. MBio (2010) 2.53
Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata. ISME J (2009) 2.44
A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations. OMICS (2010) 2.42
Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome. World J Gastroenterol (2010) 2.41
Environmental whole-genome amplification to access microbial populations in contaminated sediments. Appl Environ Microbiol (2006) 2.24
Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen. J Bacteriol (2006) 2.08
Man's best friend? The effect of pet ownership on house dust microbial communities. J Allergy Clin Immunol (2010) 2.06
Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis. Appl Environ Microbiol (2003) 2.01
Environmental genomics reveals a single-species ecosystem deep within Earth. Science (2008) 1.98
Long-term sustainability of a high-energy, low-diversity crustal biome. Science (2006) 1.97
Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups. Proc Natl Acad Sci U S A (2012) 1.88
Selective progressive response of soil microbial community to wild oat roots. ISME J (2008) 1.87
Environmental microarray analyses of Antarctic soil microbial communities. ISME J (2008) 1.84
Genome plasticity in Yersinia pestis. Microbiology (2002) 1.66
Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance. Front Microbiol (2011) 1.65
Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill. Environ Microbiol (2012) 1.58
Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland. ISME J (2009) 1.58
Structure of the human gastric bacterial community in relation to Helicobacter pylori status. ISME J (2010) 1.58
Influence of vitamin B12 and cocultures on the growth of Dehalococcoides isolates in defined medium. Appl Environ Microbiol (2007) 1.53
An internal reference technique for accurately quantifying specific mRNAs by real-time PCR with application to the tceA reductive dehalogenase gene. Appl Environ Microbiol (2005) 1.51
Whole-genome transcriptional analysis of heavy metal stresses in Caulobacter crescentus. J Bacteriol (2005) 1.49
A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells. ISME J (2008) 1.48
Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing. Appl Environ Microbiol (2009) 1.41
Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the gulf of Mexico. Environ Sci Technol (2013) 1.38
Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome. PLoS One (2010) 1.38
Phylogenetic characterization of microbial communities that reductively dechlorinate TCE based upon a combination of molecular techniques. Environ Sci Technol (2002) 1.35
Pyrosequencing analysis of bacterial biofilm communities in water meters of a drinking water distribution system. Appl Environ Microbiol (2010) 1.35
Animal-to-animal variation in fecal microbial diversity among beef cattle. Appl Environ Microbiol (2010) 1.33
Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool. BMC Bioinformatics (2007) 1.33
PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip. Appl Environ Microbiol (2011) 1.32
Microbial community analysis of a coastal salt marsh affected by the Deepwater Horizon oil spill. PLoS One (2012) 1.32
Direct cellular lysis/protein extraction protocol for soil metaproteomics. J Proteome Res (2010) 1.31
Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase. Appl Environ Microbiol (2008) 1.31
Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp. Appl Environ Microbiol (2006) 1.25
Characterization of coastal urban watershed bacterial communities leads to alternative community-based indicators. PLoS One (2010) 1.24
Discrimination of multiple Dehalococcoides strains in a trichloroethene enrichment by quantification of their reductive dehalogenase genes. Appl Environ Microbiol (2006) 1.24
Use of subtractive hybridization for comprehensive surveys of prokaryotic genome differences. FEMS Microbiol Lett (2002) 1.24
Stable carbon isotope fractionation during enhanced in situ bioremediation of trichloroethene. Environ Sci Technol (2002) 1.23
Investigation of carbon metabolism in "Dehalococcoides ethenogenes" strain 195 by use of isotopomer and transcriptomic analyses. J Bacteriol (2009) 1.22
Microbial reductive debromination of polybrominated diphenyl ethers (PBDEs). Environ Sci Technol (2006) 1.21
Transcriptional expression of the tceA gene in a Dehalococcoides-containing microbial enrichment. Appl Environ Microbiol (2005) 1.21
Bacterial community structure in geographically distributed biological wastewater treatment reactors. Environ Sci Technol (2010) 1.16
Environmental determinants of and impact on childhood asthma by the bacterial community in household dust. Appl Environ Microbiol (2010) 1.14
Microbial Response to the MC-252 Oil and Corexit 9500 in the Gulf of Mexico. Front Microbiol (2012) 1.14
Versatility in corrinoid salvaging and remodeling pathways supports corrinoid-dependent metabolism in Dehalococcoides mccartyi. Appl Environ Microbiol (2012) 1.14
Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. ISME J (2013) 1.14
Quantifying genes and transcripts to assess the in situ physiology of "Dehalococcoides" spp. in a trichloroethene-contaminated groundwater site. Appl Environ Microbiol (2008) 1.13
Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows. ISME J (2011) 1.12
In situ long-term reductive bioimmobilization of Cr(VI) in groundwater using hydrogen release compound. Environ Sci Technol (2008) 1.12
Comparative genomics of "Dehalococcoides ethenogenes" 195 and an enrichment culture containing unsequenced "Dehalococcoides" strains. Appl Environ Microbiol (2008) 1.10
Assays for the rapid and specific identification of North American Yersinia pestis and the common laboratory strain CO92. Biotechniques (2008) 1.09
High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats. MBio (2015) 1.09
Identification of genes associated with survival of Salmonella enterica serovar Enteritidis in chicken egg albumen. Appl Environ Microbiol (2006) 1.08
Transcriptomic microarray analysis of corrinoid responsive genes in Dehalococcoides ethenogenes strain 195. FEMS Microbiol Lett (2009) 1.07
Avian incubation inhibits growth and diversification of bacterial assemblages on eggs. PLoS One (2009) 1.06
Soil microbial community successional patterns during forest ecosystem restoration. Appl Environ Microbiol (2011) 1.05
New perspectives on viable microbial communities in low-biomass cleanroom environments. ISME J (2012) 1.03
Simrank: Rapid and sensitive general-purpose k-mer search tool. BMC Ecol (2011) 1.03