Published in Science on May 05, 2011
Defining the core Arabidopsis thaliana root microbiome. Nature (2012) 5.56
Mass spectral molecular networking of living microbial colonies. Proc Natl Acad Sci U S A (2012) 3.56
Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions. PLoS Genet (2012) 3.46
Going back to the roots: the microbial ecology of the rhizosphere. Nat Rev Microbiol (2013) 2.73
Microbial life in the phyllosphere. Nat Rev Microbiol (2012) 2.61
Belowground biodiversity and ecosystem functioning. Nature (2014) 2.00
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Root exudation of phytochemicals in Arabidopsis follows specific patterns that are developmentally programmed and correlate with soil microbial functions. PLoS One (2013) 1.75
Structure, variation, and assembly of the root-associated microbiomes of rice. Proc Natl Acad Sci U S A (2015) 1.73
Transparent soil for imaging the rhizosphere. PLoS One (2012) 1.62
Desert farming benefits from microbial potential in arid soils and promotes diversity and plant health. PLoS One (2011) 1.56
Rhizosphere microbiome assemblage is affected by plant development. ISME J (2013) 1.53
Microbial population and community dynamics on plant roots and their feedbacks on plant communities. Annu Rev Microbiol (2012) 1.50
Induced systemic resistance and the rhizosphere microbiome. Plant Pathol J (2013) 1.46
Selection on soil microbiomes reveals reproducible impacts on plant function. ISME J (2015) 1.35
Metabolic and transcriptomic changes induced in Arabidopsis by the rhizobacterium Pseudomonas fluorescens SS101. Plant Physiol (2012) 1.29
A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis. J Allergy Clin Immunol (2012) 1.28
Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants. ISME J (2013) 1.26
Unraveling the plant microbiome: looking back and future perspectives. Front Microbiol (2014) 1.23
Primer and platform effects on 16S rRNA tag sequencing. Front Microbiol (2015) 1.22
Functional soil microbiome: belowground solutions to an aboveground problem. Plant Physiol (2014) 1.22
Low nitrogen fertilization adapts rice root microbiome to low nutrient environment by changing biogeochemical functions. Microbes Environ (2014) 1.17
A road map for the development of community systems (CoSy) biology. Nat Rev Microbiol (2012) 1.16
Promise for plant pest control: root-associated pseudomonads with insecticidal activities. Front Plant Sci (2013) 1.13
p-Coumaric acid influenced cucumber rhizosphere soil microbial communities and the growth of Fusarium oxysporum f.sp. cucumerinum Owen. PLoS One (2012) 1.13
The rhizosphere revisited: root microbiomics. Front Plant Sci (2013) 1.12
How to assemble a beneficial microbiome in three easy steps. Ecol Lett (2012) 1.08
Who's who in the plant root microbiome? Nat Biotechnol (2012) 1.07
Evaluation of environmental bacterial communities as a factor affecting the growth of duckweed Lemna minor. Biotechnol Biofuels (2017) 1.07
Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata. ISME J (2014) 1.07
Unraveling root developmental programs initiated by beneficial Pseudomonas spp. bacteria. Plant Physiol (2013) 1.06
Microbial and biochemical basis of a Fusarium wilt-suppressive soil. ISME J (2015) 1.06
New perspectives on viable microbial communities in low-biomass cleanroom environments. ISME J (2012) 1.03
The microbiome of medicinal plants: diversity and importance for plant growth, quality and health. Front Microbiol (2013) 1.02
Nonribosomal peptides, key biocontrol components for Pseudomonas fluorescens In5, isolated from a Greenlandic suppressive soil. MBio (2015) 1.01
Fungal community structure in disease suppressive soils assessed by 28S LSU gene sequencing. PLoS One (2014) 0.99
Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny. ISME J (2013) 0.99
Plant-microbe rhizosphere interactions mediated by Rehmannia glutinosa root exudates under consecutive monoculture. Sci Rep (2015) 0.99
Molecular recognition by a polymorphic cell surface receptor governs cooperative behaviors in bacteria. PLoS Genet (2013) 0.98
Unravelling Linkages between Plant Community Composition and the Pathogen-Suppressive Potential of Soils. Sci Rep (2016) 0.98
Metabolic potential of endophytic bacteria. Curr Opin Biotechnol (2013) 0.96
An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products. Nat Commun (2015) 0.96
Diversity and functions of volatile organic compounds produced by Streptomyces from a disease-suppressive soil. Front Microbiol (2015) 0.95
Changes of soil bacterial diversity as a consequence of agricultural land use in a semi-arid ecosystem. PLoS One (2013) 0.95
Dynamics of soil bacterial communities in response to repeated application of manure containing sulfadiazine. PLoS One (2014) 0.94
The plant microbiome explored: implications for experimental botany. J Exp Bot (2015) 0.94
Pyrroloquinoline quinone biosynthesis gene pqqC, a novel molecular marker for studying the phylogeny and diversity of phosphate-solubilizing pseudomonads. Appl Environ Microbiol (2011) 0.93
Role of bacterial communities in the natural suppression of Rhizoctonia solani bare patch disease of wheat (Triticum aestivum L.). Appl Environ Microbiol (2013) 0.93
Genomic variability as a driver of plant-pathogen coevolution? Curr Opin Plant Biol (2014) 0.93
Different continuous cropping spans significantly affect microbial community membership and structure in a vanilla-grown soil as revealed by deep pyrosequencing. Microb Ecol (2014) 0.92
Impact of plant domestication on rhizosphere microbiome assembly and functions. Plant Mol Biol (2015) 0.92
Banana-associated microbial communities in Uganda are highly diverse but dominated by Enterobacteriaceae. Appl Environ Microbiol (2012) 0.91
Analyzing the antagonistic potential of the lichen microbiome against pathogens by bridging metagenomic with culture studies. Front Microbiol (2015) 0.90
A massively spectacular view of the chemical lives of microbes. Proc Natl Acad Sci U S A (2012) 0.90
Two-way plant mediated interactions between root-associated microbes and insects: from ecology to mechanisms. Front Plant Sci (2013) 0.90
The Effect of Long-Term Continuous Cropping of Black Pepper on Soil Bacterial Communities as Determined by 454 Pyrosequencing. PLoS One (2015) 0.90
Transplanting Soil Microbiomes Leads to Lasting Effects on Willow Growth, but not on the Rhizosphere Microbiome. Front Microbiol (2015) 0.89
Molecular recognition in myxobacterial outer membrane exchange: functional, social and evolutionary implications. Mol Microbiol (2013) 0.89
Water regime influences bulk soil and Rhizosphere of Cereus jamacaru bacterial communities in the Brazilian Caatinga biome. PLoS One (2013) 0.89
Plant root-microbe communication in shaping root microbiomes. Plant Mol Biol (2016) 0.89
Application of phylogenetic microarrays to interrogation of human microbiota. FEMS Microbiol Ecol (2011) 0.88
Deciphering microbial landscapes of fish eggs to mitigate emerging diseases. ISME J (2014) 0.88
Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges. MBio (2016) 0.88
Biotic interactions in the rhizosphere: a diverse cooperative enterprise for plant productivity. Plant Physiol (2014) 0.88
Role of root microbiota in plant productivity. J Exp Bot (2015) 0.88
Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health. Nat Commun (2015) 0.87
Amazonian dark Earth and plant species from the Amazon region contribute to shape rhizosphere bacterial communities. Microb Ecol (2014) 0.87
Inhibition of microbial sulfate reduction in a flow-through column system by (per)chlorate treatment. Front Microbiol (2014) 0.87
A widespread plant-fungal-bacterial symbiosis promotes plant biodiversity, plant nutrition and seedling recruitment. ISME J (2015) 0.87
Myxobacterial tools for social interactions. Res Microbiol (2012) 0.87
Neutral Models of Microbiome Evolution. PLoS Comput Biol (2015) 0.87
Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition. ISME J (2015) 0.87
Manipulating the banana rhizosphere microbiome for biological control of Panama disease. Sci Rep (2015) 0.86
Genetic and functional characterization of cyclic lipopeptide white-line-inducing principle (WLIP) production by rice rhizosphere isolate Pseudomonas putida RW10S2. Appl Environ Microbiol (2012) 0.86
Rapid evolution of microbe-mediated protection against pathogens in a worm host. ISME J (2016) 0.86
Bioprospecting potential of the soil metagenome: novel enzymes and bioactivities. Genomics Inform (2013) 0.86
Host Plant Compatibility Shapes the Proteogenome of Frankia coriariae. Front Microbiol (2017) 0.85
Differences between the rhizosphere microbiome of Beta vulgaris ssp. maritima-ancestor of all beet crops-and modern sugar beets. Front Microbiol (2014) 0.85
Unearthing the genomes of plant-beneficial Pseudomonas model strains WCS358, WCS374 and WCS417. BMC Genomics (2015) 0.84
Unlocking the bacterial and fungal communities assemblages of sugarcane microbiome. Sci Rep (2016) 0.84
Harnessing phytomicrobiome signaling for rhizosphere microbiome engineering. Front Plant Sci (2015) 0.84
Antifungal Activity of Paenibacillus kribbensis Strain T-9 Isolated from Soils against Several Plant Pathogenic Fungi. Plant Pathol J (2014) 0.84
Does wheat genetically modified for disease resistance affect root-colonizing pseudomonads and arbuscular mycorrhizal fungi? PLoS One (2013) 0.84
Networking in the Plant Microbiome. PLoS Biol (2016) 0.84
Fungal invasion of the rhizosphere microbiome. ISME J (2015) 0.84
Legacy effects of anaerobic soil disinfestation on soil bacterial community composition and production of pathogen-suppressing volatiles. Front Microbiol (2015) 0.83
Plant growth in Arabidopsis is assisted by compost soil-derived microbial communities. Front Plant Sci (2013) 0.83
Coupling genetic and chemical microbiome profiling reveals heterogeneity of archaeome and bacteriome in subsurface biofilms that are dominated by the same archaeal species. PLoS One (2014) 0.83
Microbial existence in controlled habitats and their resistance to space conditions. Microbes Environ (2014) 0.83
Complementarity among plant growth promoting traits in rhizospheric bacterial communities promotes plant growth. Sci Rep (2015) 0.82
Chitin amendment increases soil suppressiveness toward plant pathogens and modulates the actinobacterial and oxalobacteraceal communities in an experimental agricultural field. Appl Environ Microbiol (2013) 0.82
Advancing the science of microbial symbiosis to support invasive species management: a case study on Phragmites in the Great Lakes. Front Microbiol (2015) 0.81
Mineral and organic growing media have distinct community structure, stability and functionality in soilless culture systems. Sci Rep (2016) 0.81
The freshwater sponge Ephydatia fluviatilis harbours diverse Pseudomonas species (Gammaproteobacteria, Pseudomonadales) with broad-spectrum antimicrobial activity. PLoS One (2014) 0.81
Bespoke microbiome therapy to manage plant diseases. Front Microbiol (2013) 0.81
Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific. Front Microbiol (2016) 0.81
Influence of soil type, cultivar and Verticillium dahliae on the structure of the root and rhizosphere soil fungal microbiome of strawberry. PLoS One (2014) 0.81
Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds. Front Microbiol (2015) 0.81
Insight into structure dynamics of soil microbiota mediated by the richness of replanted Pseudostellaria heterophylla. Sci Rep (2016) 0.81
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res (2011) 17.21
PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics (2009) 15.93
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J (2011) 13.64
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Res (2008) 9.09
Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science (2010) 6.73
High-density microarray of small-subunit ribosomal DNA probes. Appl Environ Microbiol (2002) 4.95
High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb Ecol (2007) 4.81
Urban aerosols harbor diverse and dynamic bacterial populations. Proc Natl Acad Sci U S A (2006) 4.62
The rhizosphere microbiome and plant health. Trends Plant Sci (2012) 4.22
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol (2006) 4.09
Development of a high-volume aerosol collection system for the identification of air-borne micro-organisms. Lett Appl Microbiol (2002) 4.02
Mass spectral molecular networking of living microbial colonies. Proc Natl Acad Sci U S A (2012) 3.56
Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions. PLoS Genet (2012) 3.46
Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray. FEMS Microbiol Lett (2005) 3.42
Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients. PLoS One (2010) 3.38
Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys. ISME J (2011) 3.24
Microbial populations responsible for specific soil suppressiveness to plant pathogens. Annu Rev Phytopathol (2002) 3.19
Going back to the roots: the microbial ecology of the rhizosphere. Nat Rev Microbiol (2013) 2.73
Chronic kidney disease alters intestinal microbial flora. Kidney Int (2012) 2.58
Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata. ISME J (2009) 2.44
The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms. FEMS Microbiol Rev (2013) 2.22
Stimulation of chitin synthesis rescues Candida albicans from echinocandins. PLoS Pathog (2008) 2.19
Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen. J Bacteriol (2006) 2.08
Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis. Appl Environ Microbiol (2003) 2.01
The PKC, HOG and Ca2+ signalling pathways co-ordinately regulate chitin synthesis in Candida albicans. Mol Microbiol (2007) 2.00
Environmental genomics reveals a single-species ecosystem deep within Earth. Science (2008) 1.98
Long-term sustainability of a high-energy, low-diversity crustal biome. Science (2006) 1.97
Selective progressive response of soil microbial community to wild oat roots. ISME J (2008) 1.87
Environmental microarray analyses of Antarctic soil microbial communities. ISME J (2008) 1.84
Cyclic lipopeptide production by plant-associated Pseudomonas spp.: diversity, activity, biosynthesis, and regulation. Mol Plant Microbe Interact (2006) 1.79
Genome plasticity in Yersinia pestis. Microbiology (2002) 1.66
Induced systemic resistance by beneficial microbes. Annu Rev Phytopathol (2014) 1.60
Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland. ISME J (2009) 1.58
Supervised classification of microbiota mitigates mislabeling errors. ISME J (2010) 1.54
Diversity and evolution of the phenazine biosynthesis pathway. Appl Environ Microbiol (2009) 1.51
Genome-based discovery, structure prediction and functional analysis of cyclic lipopeptide antibiotics in Pseudomonas species. Mol Microbiol (2007) 1.51
Whole-genome transcriptional analysis of heavy metal stresses in Caulobacter crescentus. J Bacteriol (2005) 1.49
A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells. ISME J (2008) 1.48
Induced Systemic Resistance by Fluorescent Pseudomonas spp. Phytopathology (2007) 1.46
Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing. Appl Environ Microbiol (2009) 1.41
Reduction of rare soil microbes modifies plant-herbivore interactions. Ecol Lett (2010) 1.39
Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the gulf of Mexico. Environ Sci Technol (2013) 1.38
Diversity of cultivated endophytic bacteria from sugarcane: genetic and biochemical characterization of Burkholderia cepacia complex isolates. Appl Environ Microbiol (2007) 1.38
Pyrosequencing analysis of bacterial biofilm communities in water meters of a drinking water distribution system. Appl Environ Microbiol (2010) 1.35
Animal-to-animal variation in fecal microbial diversity among beef cattle. Appl Environ Microbiol (2010) 1.33
Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool. BMC Bioinformatics (2007) 1.33
PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip. Appl Environ Microbiol (2011) 1.32
Microbial community analysis of a coastal salt marsh affected by the Deepwater Horizon oil spill. PLoS One (2012) 1.32
Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase. Appl Environ Microbiol (2008) 1.31
Metabolic and transcriptomic changes induced in Arabidopsis by the rhizobacterium Pseudomonas fluorescens SS101. Plant Physiol (2012) 1.29
Interactions between plants and beneficial Pseudomonas spp.: exploiting bacterial traits for crop protection. Antonie Van Leeuwenhoek (2007) 1.29
Transcriptional and antagonistic responses of Pseudomonas fluorescens Pf0-1 to phylogenetically different bacterial competitors. ISME J (2011) 1.27
Polymorphisms within the prnD and pltC genes from pyrrolnitrin and pyoluteorin-producing Pseudomonas and Burkholderia spp. FEMS Microbiol Ecol (2003) 1.25
Characterization of coastal urban watershed bacterial communities leads to alternative community-based indicators. PLoS One (2010) 1.24
Pathogen self-defense: mechanisms to counteract microbial antagonism,. Annu Rev Phytopathol (2003) 1.24
Use of subtractive hybridization for comprehensive surveys of prokaryotic genome differences. FEMS Microbiol Lett (2002) 1.24
Biochemical, genetic, and zoosporicidal properties of cyclic lipopeptide surfactants produced by Pseudomonas fluorescens. Appl Environ Microbiol (2003) 1.22
The "most wanted" taxa from the human microbiome for whole genome sequencing. PLoS One (2012) 1.21
Role of the cyclic lipopeptide massetolide A in biological control of Phytophthora infestans and in colonization of tomato plants by Pseudomonas fluorescens. New Phytol (2007) 1.19
Gut microbiota in multiple sclerosis: possible influence of immunomodulators. J Investig Med (2015) 1.18
Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica. PLoS Genet (2013) 1.18
Bacterial community structure in geographically distributed biological wastewater treatment reactors. Environ Sci Technol (2010) 1.16
Environmental determinants of and impact on childhood asthma by the bacterial community in household dust. Appl Environ Microbiol (2010) 1.14
Microbial Response to the MC-252 Oil and Corexit 9500 in the Gulf of Mexico. Front Microbiol (2012) 1.14
Pseudomonas fluorescens WCS374r-induced systemic resistance in rice against Magnaporthe oryzae is based on pseudobactin-mediated priming for a salicylic acid-repressible multifaceted defense response. Plant Physiol (2008) 1.12
Differential ability of genotypes of 2,4-diacetylphloroglucinol-producing Pseudomonas fluorescens strains to colonize the roots of pea plants. Appl Environ Microbiol (2002) 1.10
Comparative genomics of "Dehalococcoides ethenogenes" 195 and an enrichment culture containing unsequenced "Dehalococcoides" strains. Appl Environ Microbiol (2008) 1.10
Protozoan-induced regulation of cyclic lipopeptide biosynthesis is an effective predation defense mechanism for Pseudomonas fluorescens. Appl Environ Microbiol (2009) 1.09
Host-targeting protein 1 (SpHtp1) from the oomycete Saprolegnia parasitica translocates specifically into fish cells in a tyrosine-O-sulphate-dependent manner. Proc Natl Acad Sci U S A (2012) 1.09
Assays for the rapid and specific identification of North American Yersinia pestis and the common laboratory strain CO92. Biotechniques (2008) 1.09
Identification of genes associated with survival of Salmonella enterica serovar Enteritidis in chicken egg albumen. Appl Environ Microbiol (2006) 1.08
EglC, a new endoglucanase from Aspergillus niger with major activity towards xyloglucan. Appl Environ Microbiol (2002) 1.07
Transcriptomic microarray analysis of corrinoid responsive genes in Dehalococcoides ethenogenes strain 195. FEMS Microbiol Lett (2009) 1.07