Published in Mol Biosyst on January 04, 2012
Reversible lysine acetylation controls the activity of the mitochondrial enzyme acetyl-CoA synthetase 2. Proc Natl Acad Sci U S A (2006) 5.96
Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry. Nature (2002) 5.48
Axin-mediated CKI phosphorylation of beta-catenin at Ser 45: a molecular switch for the Wnt pathway. Genes Dev (2002) 3.80
Analysis of nucleolar protein dynamics reveals the nuclear degradation of ribosomal proteins. Curr Biol (2007) 3.55
Distinct and overlapping sets of SUMO-1 and SUMO-2 target proteins revealed by quantitative proteomics. Mol Cell Proteomics (2006) 2.64
Interaction profiling identifies the human nuclear exosome targeting complex. Mol Cell (2011) 2.56
Identification of let-7-regulated oncofetal genes. Cancer Res (2008) 2.56
Exome capture reveals ZNF423 and CEP164 mutations, linking renal ciliopathies to DNA damage response signaling. Cell (2012) 2.54
Retracted The RNA-binding protein KSRP promotes decay of beta-catenin mRNA and is inactivated by PI3K-AKT signaling. PLoS Biol (2006) 2.42
MSQuant, an open source platform for mass spectrometry-based quantitative proteomics. J Proteome Res (2010) 2.40
SQ-standardized sublingual grass immunotherapy: confirmation of disease modification 2 years after 3 years of treatment in a randomized trial. J Allergy Clin Immunol (2012) 2.28
Spermidine and resveratrol induce autophagy by distinct pathways converging on the acetylproteome. J Cell Biol (2011) 2.23
Microcolumns with self-assembled particle frits for proteomics. J Chromatogr A (2002) 2.17
Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods. EMBO J (2011) 2.14
The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L. EMBO J (2010) 2.07
Cyclic AMP induces integrin-mediated cell adhesion through Epac and Rap1 upon stimulation of the beta 2-adrenergic receptor. J Cell Biol (2003) 2.07
Identification of miRNA targets with stable isotope labeling by amino acids in cell culture. Nucleic Acids Res (2006) 1.97
A proteomic study of SUMO-2 target proteins. J Biol Chem (2004) 1.92
RGM is a repulsive guidance molecule for retinal axons. Nature (2002) 1.82
The chromatin-remodeling factor CHD4 coordinates signaling and repair after DNA damage. J Cell Biol (2010) 1.82
The ubiquitin-proteasome system is a key component of the SUMO-2/3 cycle. Mol Cell Proteomics (2008) 1.81
Site-specific phosphorylation dynamics of the nuclear proteome during the DNA damage response. Mol Cell Proteomics (2010) 1.81
A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: identification of a novel protein, Frigg, as a protein kinase A substrate. Mol Cell Proteomics (2002) 1.78
NOPdb: Nucleolar Proteome Database. Nucleic Acids Res (2006) 1.68
The human cap-binding complex is functionally connected to the nuclear RNA exosome. Nat Struct Mol Biol (2013) 1.67
Ordered organelle degradation during starvation-induced autophagy. Mol Cell Proteomics (2008) 1.61
A proteomic approach for identification of secreted proteins during the differentiation of 3T3-L1 preadipocytes to adipocytes. Mol Cell Proteomics (2002) 1.61
Long-term clinical efficacy in grass pollen-induced rhinoconjunctivitis after treatment with SQ-standardized grass allergy immunotherapy tablet. J Allergy Clin Immunol (2010) 1.55
Quantitative proteomics identifies ferritin in the innate immune response of C. elegans. Virulence (2011) 1.53
Pseudosubstrate regulation of the SCF(beta-TrCP) ubiquitin ligase by hnRNP-U. Genes Dev (2002) 1.51
A mass spectrometry-friendly database for cSNP identification. Nat Methods (2007) 1.43
An FHA domain-mediated protein interaction network of Rad53 reveals its role in polarized cell growth. J Cell Biol (2006) 1.40
The Vtc proteins in vacuole fusion: coupling NSF activity to V(0) trans-complex formation. EMBO J (2002) 1.40
BASP1 is a transcriptional cosuppressor for the Wilms' tumor suppressor protein WT1. Mol Cell Biol (2004) 1.38
Identification of autophagosome-associated proteins and regulators by quantitative proteomic analysis and genetic screens. Mol Cell Proteomics (2012) 1.38
Quantitative proteomic assessment of very early cellular signaling events. Nat Biotechnol (2007) 1.35
Bacterial antibiotic resistance levels in Danish farmland as a result of treatment with pig manure slurry. Environ Int (2003) 1.32
Bioinformatic analysis of the nucleolus. Biochem J (2003) 1.30
Depletion of kinesin 5B affects lysosomal distribution and stability and induces peri-nuclear accumulation of autophagosomes in cancer cells. PLoS One (2009) 1.30
FACT facilitates chromatin transcription by RNA polymerases I and III. EMBO J (2009) 1.23
Bod1, a novel kinetochore protein required for chromosome biorientation. J Cell Biol (2007) 1.22
The cyclic AMP-Epac1-Rap1 pathway is dissociated from regulation of effector functions in monocytes but acquires immunoregulatory function in mature macrophages. J Immunol (2006) 1.18
Advancing cell biology through proteomics in space and time (PROSPECTS). Mol Cell Proteomics (2012) 1.15
Are meta-analysis-based comparisons solid evidence? J Allergy Clin Immunol (2013) 1.09
Inhibition of adipocyte differentiation by resistin-like molecule alpha. Biochemical characterization of its oligomeric nature. J Biol Chem (2002) 1.08
Quantitative proteomics by amino acid labeling in C. elegans. Nat Methods (2011) 1.05
Temporal profiling of the chromatin proteome reveals system-wide responses to replication inhibition. Curr Biol (2008) 1.04
A wiring of the human nucleolus. Mol Cell (2006) 1.03
Regulation of lipid droplet size and phospholipid composition by stearoyl-CoA desaturase. J Lipid Res (2013) 1.01
The minotaur proteome: avoiding cross-species identifications deriving from bovine serum in cell culture models. Proteomics (2010) 1.01
Influence of age, sex and herd characteristics on the occurrence of Verocytotoxin-producing Escherichia coli O157 in Danish dairy farms. Vet Microbiol (2002) 0.99
A chemical-genetic screen to unravel the genetic network of CDC28/CDK1 links ubiquitin and Rad6-Bre1 to cell cycle progression. Proc Natl Acad Sci U S A (2011) 0.96
Cdc28 kinase activity regulates the basal transcription machinery at a subset of genes. Proc Natl Acad Sci U S A (2012) 0.95
Analysis of tyrosine phosphorylation sites in signaling molecules by a phosphotyrosine-specific immonium ion scanning method. Sci STKE (2002) 0.95
Ordered bulk degradation via autophagy. Autophagy (2008) 0.94
Acetylation dynamics of human nuclear proteins during the ionizing radiation-induced DNA damage response. Cell Cycle (2013) 0.93
A divergent calponin homology (NN-CH) domain defines a novel family: implications for evolution of ciliary IFT complex B proteins. Bioinformatics (2013) 0.91
The epidermal growth factor-like growth factor amphiregulin is strongly induced by the adenosine 3',5'-monophosphate pathway in various cell types. Endocrinology (2004) 0.91
The Saccharomyces cerevisiae Rad6 postreplication repair and Siz1/Srs2 homologous recombination-inhibiting pathways process DNA damage that arises in asf1 mutants. Mol Cell Biol (2009) 0.91
Rapid desalting of protein samples for on-line microflow electrospray ionization mass spectrometry. Anal Biochem (2004) 0.89
Role of functional single nucleotide polymorphisms of MMP1, MMP2, and MMP9 in open angle glaucomas. Mol Vis (2010) 0.89
Comparative proteomics and activity of a green sulfur bacterium through the water column of Lake Cadagno, Switzerland. Environ Microbiol (2010) 0.87
Large-scale chromatin organization and the localization of proteins involved in gene expression in human cells. J Histochem Cytochem (2002) 0.87
Temporal profiling and pulsed SILAC labeling identify novel secreted proteins during ex vivo osteoblast differentiation of human stromal stem cells. Mol Cell Proteomics (2012) 0.87
PhosphoSiteAnalyzer: a bioinformatic platform for deciphering phospho proteomes using kinase predictions retrieved from NetworKIN. J Proteome Res (2012) 0.87
The antipsychotic drug chlorpromazine enhances the cytotoxic effect of tamoxifen in tamoxifen-sensitive and tamoxifen-resistant human breast cancer cells. Anticancer Drugs (2009) 0.86
TORC1 inhibits GSK3-mediated Elo2 phosphorylation to regulate very long chain fatty acid synthesis and autophagy. Cell Rep (2013) 0.86
Phosphoproteomic analysis of cells treated with longevity-related autophagy inducers. Cell Cycle (2012) 0.85
Decellularized matrix from tumorigenic human mesenchymal stem cells promotes neovascularization with galectin-1 dependent endothelial interaction. PLoS One (2011) 0.85
ErbB2-associated changes in the lysosomal proteome. Proteomics (2011) 0.85
Functional loss of two ceramide synthases elicits autophagy-dependent lifespan extension in C. elegans. PLoS One (2013) 0.84
Autophagy in the light of sphingolipid metabolism. Apoptosis (2015) 0.84
Strength in numbers: "Omics" studies of C. elegans innate immunity. Virulence (2012) 0.83
Longevity-relevant regulation of autophagy at the level of the acetylproteome. Autophagy (2011) 0.83
A method for measuring fatty acid oxidation in C. elegans. Worm (2012) 0.83
Tissue- and paralogue-specific functions of acyl-CoA-binding proteins in lipid metabolism in Caenorhabditis elegans. Biochem J (2011) 0.81
Organelle proteomics by label-free and SILAC-based protein correlation profiling. Methods Mol Biol (2010) 0.81
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium. FEMS Microbiol Lett (2011) 0.80
Quantitative proteomics by amino acid labeling identifies novel NHR-49 regulated proteins in C. elegans. Worm (2012) 0.78
Bioactive components from flowers of Sambucus nigra L. increase glucose uptake in primary porcine myotube cultures and reduce fat accumulation in Caenorhabditis elegans. J Agric Food Chem (2013) 0.78
Protein tyrosine phosphatase SHP2/PTPN11 mistargeting as a consequence of SH2-domain point mutations associated with Noonan Syndrome and leukemia. J Proteomics (2013) 0.78
Centrosome isolation and analysis by mass spectrometry-based proteomics. Methods Enzymol (2013) 0.77
The cell cycle rallies the transcription cycle: Cdc28/Cdk1 is a cell cycle-regulated transcriptional CDK. Transcription (2012) 0.77
Friend or food: different cues to the autophagosomal proteome. Autophagy (2012) 0.76
Signal transduction by growth factor receptors: signaling in an instant. Cell Cycle (2007) 0.76
Identification of a membrane proteomic signature for human embryonic stem cells independent of culture conditions. Stem Cell Res (2008) 0.76
Quantitative proteomics identifies unanticipated regulators of nitrogen- and glucose starvation. Mol Biosyst (2014) 0.76
Identification of novel protein functions and signaling mechanisms by genetics and quantitative phosphoproteomics in Caenorhabditis elegans. Methods Mol Biol (2014) 0.76
Retraction: The RNA-Binding Protein KSRP Promotes Decay of β-Catenin mRNA and Is Inactivated by PI3K-AKT Signaling. PLoS Biol (2015) 0.75
TORC1 Inhibits GSK3-Mediated Elo2 Phosphorylation to Regulate Very Long Chain Fatty Acid Synthesis and Autophagy. Cell Rep (2017) 0.75
Corrigendum: Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes. Genome Res (2017) 0.75