NOPdb: Nucleolar Proteome Database.

Slicing across kingdoms: regeneration in plants and animals. Cell (2008) 2.18

Centromere RNA is a key component for the assembly of nucleoproteins at the nucleolus and centromere. Genome Res (2007) 2.03

NOPdb: Nucleolar Proteome Database--2008 update. Nucleic Acids Res (2008) 1.93

Purification of human telomerase complexes identifies factors involved in telomerase biogenesis and telomere length regulation. Mol Cell (2007) 1.87

Mapping the LINE1 ORF1 protein interactome reveals associated inhibitors of human retrotransposition. Nucleic Acids Res (2013) 1.31

Nucleolar trafficking is essential for nuclear export of intronless herpesvirus mRNA. Proc Natl Acad Sci U S A (2006) 1.30

Genome-wide screen of three herpesviruses for protein subcellular localization and alteration of PML nuclear bodies. PLoS Pathog (2008) 1.20

Whole-genome screening identifies proteins localized to distinct nuclear bodies. J Cell Biol (2013) 1.15

MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes. Nucleic Acids Res (2006) 1.06

Proteomics analysis of nucleolar SUMO-1 target proteins upon proteasome inhibition. Mol Cell Proteomics (2009) 1.05

Nucleoporin 153 arrests the nuclear import of hepatitis B virus capsids in the nuclear basket. PLoS Pathog (2010) 1.04

Nucleolar separation from chromosomes during Aspergillus nidulans mitosis can occur without spindle forces. Mol Biol Cell (2009) 0.99

The BRCT domain of mammalian Pes1 is crucial for nucleolar localization and rRNA processing. Nucleic Acids Res (2006) 0.97

Perturbations at the ribosomal genes loci are at the centre of cellular dysfunction and human disease. Cell Biosci (2014) 0.93

Sorting the nuclear proteome. Bioinformatics (2011) 0.92

Evolutionarily conserved function of RRP36 in early cleavages of the pre-rRNA and production of the 40S ribosomal subunit. Mol Cell Biol (2009) 0.91

SUV39h-independent association of HP1 beta with fibrillarin-positive nucleolar regions. Chromosoma (2009) 0.89

LocDB: experimental annotations of localization for Homo sapiens and Arabidopsis thaliana. Nucleic Acids Res (2010) 0.89

Nucleolar protein trafficking in response to HIV-1 Tat: rewiring the nucleolus. PLoS One (2012) 0.87

The proteins of intra-nuclear bodies: a data-driven analysis of sequence, interaction and expression. BMC Syst Biol (2010) 0.84

A positive feedback loop between EBP2 and c-Myc regulates rDNA transcription, cell proliferation, and tumorigenesis. Cell Death Dis (2014) 0.83

What is new in the nucleolus?: workshop on the nucleolus: new perspectives. EMBO Rep (2006) 0.83

Development of novel mouse hybridomas producing monoclonal antibodies specific to human and mouse nucleolar protein SURF-6. Hybridoma (Larchmt) (2012) 0.82

The estrogen and c-Myc target gene HSPC111 is over-expressed in breast cancer and associated with poor patient outcome. Breast Cancer Res (2008) 0.82

Prostaglandins regulate nuclear localization of Fascin and its function in nucleolar architecture. Mol Biol Cell (2015) 0.81

Pontin is localized in nucleolar fibrillar centers. Chromosoma (2008) 0.79

Overexpression of p49/STRAP alters cellular cytoskeletal structure and gross anatomy in mice. BMC Cell Biol (2014) 0.78

Molecular characterizations of Nop16 in murine mammary tumors with varying levels of c-Myc. Transgenic Res (2011) 0.78

The nucleus introduced. Cold Spring Harb Perspect Biol (2011) 0.78

PNRC accumulates in the nucleolus by interaction with B23/nucleophosmin via its nucleolar localization sequence. Biochim Biophys Acta (2010) 0.78

Compartmentalization and Functionality of Nuclear Disorder: Intrinsic Disorder and Protein-Protein Interactions in Intra-Nuclear Compartments. Int J Mol Sci (2015) 0.77

Proteome distribution between nucleoplasm and nucleolus and its relation to ribosome biogenesis in Arabidopsis thaliana. RNA Biol (2016) 0.76

NSort/DB: an intranuclear compartment protein database. Genomics Proteomics Bioinformatics (2012) 0.76

The blossoming of RNA biology: Novel insights from plant systems. RNA (2006) 0.76

ADPriboDB: The database of ADP-ribosylated proteins. Nucleic Acids Res (2016) 0.75

In vivo approaches to dissecting the function of RNA helicases in eukaryotic ribosome assembly. Methods Enzymol (2012) 0.75

Crosstalk between the nucleolus and the DNA damage response. Mol Biosyst (2017) 0.75

Nucleolar Enrichment of Brain Proteins with Critical Roles in Human Neurodevelopment. Mol Cell Proteomics (2016) 0.75

Connecting the dots of RNA-directed DNA methylation in Arabidopsis thaliana. Chromosome Res (2014) 0.75

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet (2000) 336.52

Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A (1998) 192.97

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell (1998) 62.20

The Pfam protein families database. Nucleic Acids Res (2004) 56.46

Global analysis of protein localization in budding yeast. Nature (2003) 33.22

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics (2002) 30.58

The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res (2003) 24.72

SMART 4.0: towards genomic data integration. Nucleic Acids Res (2004) 19.37

Ensembl 2004. Nucleic Acids Res (2004) 11.88

Database resources of the National Center for Biotechnology Information: update. Nucleic Acids Res (2004) 9.85

Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res (2002) 9.50

MIPS: analysis and annotation of proteins from whole genomes. Nucleic Acids Res (2004) 8.58

Nucleolar proteome dynamics. Nature (2005) 7.32

Directed proteomic analysis of the human nucleolus. Curr Biol (2002) 7.04

Does the ribosome translate cancer? Nat Rev Cancer (2003) 6.89

Pre-ribosomes on the road from the nucleolus to the cytoplasm. Trends Cell Biol (2003) 4.31

The plurifunctional nucleolus. Nucleic Acids Res (1998) 4.11

Functional proteomic analysis of human nucleolus. Mol Biol Cell (2002) 3.07

Sensing cellular stress: another new function for the nucleolus? Sci STKE (2004) 2.09

The nucleolus--a gateway to viral infection? Arch Virol (2002) 1.84

Regulation of ribosome biogenesis within the nucleolus. FEBS Lett (2001) 1.34

Bioinformatic analysis of the nucleolus. Biochem J (2003) 1.30

The dynamics of the nucleolus. Crit Rev Eukaryot Gene Expr (2003) 1.08

ISOLATION OF NUCLEOLI. Exp Cell Res (1963) 0.95

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol (2008) 38.00

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature (2002) 37.66

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics (2002) 30.58

Mass spectrometry-based proteomics. Nature (2003) 28.94

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell (2006) 20.92

Lysine acetylation targets protein complexes and co-regulates major cellular functions. Science (2009) 20.49

miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs. Genes Dev (2002) 19.24

Universal sample preparation method for proteome analysis. Nat Methods (2009) 16.88

In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nat Protoc (2006) 16.56

Andromeda: a peptide search engine integrated into the MaxQuant environment. J Proteome Res (2011) 14.82

Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal Chem (2003) 13.58

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips. Nat Protoc (2007) 10.71

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol Cell Proteomics (2005) 10.67

Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap. Mol Cell Proteomics (2005) 10.60

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast. Nature (2008) 10.28

The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol (2007) 10.24

Proteomic characterization of the human centrosome by protein correlation profiling. Nature (2003) 8.74

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. Sci Signal (2010) 8.61

Mass spectrometry-based proteomics turns quantitative. Nat Chem Biol (2005) 7.52

Nucleolar proteome dynamics. Nature (2005) 7.32

The multifunctional nucleolus. Nat Rev Mol Cell Biol (2007) 7.08

Directed proteomic analysis of the human nucleolus. Curr Biol (2002) 7.04

Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics. Proc Natl Acad Sci U S A (2003) 6.87

Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Cell (2003) 6.77

Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4. Cell (2007) 6.62

Mechanism of regulation of WAVE1-induced actin nucleation by Rac1 and Nck. Nature (2002) 6.26

Reversible lysine acetylation controls the activity of the mitochondrial enzyme acetyl-CoA synthetase 2. Proc Natl Acad Sci U S A (2006) 5.96

Large-scale proteomic analysis of the human spliceosome. Genome Res (2002) 5.75

Specificity in Toll-like receptor signalling through distinct effector functions of TRAF3 and TRAF6. Nature (2005) 5.72

Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry. Nature (2002) 5.48

Deep proteome and transcriptome mapping of a human cancer cell line. Mol Syst Biol (2011) 5.48

Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. Mol Cell (2008) 5.38

Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nat Biotechnol (2004) 5.22

A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC). Nat Protoc (2006) 5.21

Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway. Mol Cell Proteomics (2005) 5.07

Higher-energy C-trap dissociation for peptide modification analysis. Nat Methods (2007) 5.04

SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function. Cell (2008) 5.02

Unbiased quantitative proteomics of lipid rafts reveals high specificity for signaling factors. Proc Natl Acad Sci U S A (2003) 4.87

A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics. Nat Protoc (2009) 4.84

Trypsin cleaves exclusively C-terminal to arginine and lysine residues. Mol Cell Proteomics (2004) 4.79

Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli. Cell (2005) 4.78

A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed. Mol Cell Proteomics (2009) 4.75

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites. Genome Biol (2007) 4.66

A mammalian organelle map by protein correlation profiling. Cell (2006) 4.54

A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. Mol Cell Proteomics (2011) 4.40

Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers. Cell (2010) 4.31

The ABC's (and XYZ's) of peptide sequencing. Nat Rev Mol Cell Biol (2004) 4.24

Human Proteinpedia enables sharing of human protein data. Nat Biotechnol (2008) 4.21

Paraspeckles: a novel nuclear domain. Curr Biol (2002) 4.19

Quantitative proteomics reveals subset-specific viral recognition in dendritic cells. Immunity (2010) 4.03

Axin-mediated CKI phosphorylation of beta-catenin at Ser 45: a molecular switch for the Wnt pathway. Genes Dev (2002) 3.80

The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins. Genome Biol (2006) 3.79

Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics (2008) 3.78

Decoding signalling networks by mass spectrometry-based proteomics. Nat Rev Mol Cell Biol (2010) 3.78

Proteome analysis of separated male and female gametocytes reveals novel sex-specific Plasmodium biology. Cell (2005) 3.77

Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer. Mol Cell Proteomics (2011) 3.75

The nucleolus under stress. Mol Cell (2010) 3.63

Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions. J Cell Biol (2010) 3.61

Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints. Cell (2010) 3.60

Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins. Mol Cell Proteomics (2007) 3.60

Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins. Mol Cell Proteomics (2012) 3.57

Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome. J Proteome Res (2009) 3.56

Analysis of nucleolar protein dynamics reveals the nuclear degradation of ribosomal proteins. Curr Biol (2007) 3.55

A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling. Nat Biotechnol (2003) 3.54

A systematic mammalian genetic interaction map reveals pathways underlying ricin susceptibility. Cell (2013) 3.53

More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS. J Proteome Res (2011) 3.53

Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes. J Cell Biol (2008) 3.53

System-wide changes to SUMO modifications in response to heat shock. Sci Signal (2009) 3.50

Phosphotyrosine interactome of the ErbB-receptor kinase family. Mol Syst Biol (2005) 3.48

Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation. Proc Natl Acad Sci U S A (2004) 3.43

Mass spectrometric-based approaches in quantitative proteomics. Methods (2003) 3.38

Mechanism of divergent growth factor effects in mesenchymal stem cell differentiation. Science (2005) 3.37

Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system. Genome Biol (2006) 3.34

Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation. Nature (2007) 3.32

Cajal body dynamics and association with chromatin are ATP-dependent. Nat Cell Biol (2002) 3.28

Nucleosome-interacting proteins regulated by DNA and histone methylation. Cell (2010) 3.25

Quantitative, high-resolution proteomics for data-driven systems biology. Annu Rev Biochem (2011) 3.19

Chromatin-Remodeling Components of the BAF Complex Facilitate Reprogramming. Cell (2010) 3.08

Nuclear speckles. Cold Spring Harb Perspect Biol (2011) 3.04

ERCC1/XPF removes the 3' overhang from uncapped telomeres and represses formation of telomeric DNA-containing double minute chromosomes. Mol Cell (2003) 3.01

Defining the transcriptome and proteome in three functionally different human cell lines. Mol Syst Biol (2010) 3.00

Regulation of ubiquitin-binding proteins by monoubiquitination. Nat Cell Biol (2006) 2.99

Decoding human cytomegalovirus. Science (2012) 2.98

Super-SILAC mix for quantitative proteomics of human tumor tissue. Nat Methods (2010) 2.95

Is proteomics the new genomics? Cell (2007) 2.92

Cajal bodies: a long history of discovery. Annu Rev Cell Dev Biol (2005) 2.92

Live-cell imaging RNAi screen identifies PP2A-B55alpha and importin-beta1 as key mitotic exit regulators in human cells. Nat Cell Biol (2010) 2.91

Mass spectrometry in high-throughput proteomics: ready for the big time. Nat Methods (2010) 2.91

Robust Salmonella metabolism limits possibilities for new antimicrobials. Nature (2006) 2.78